Literature DB >> 23646034

Accurate Molecular Polarizabilities Based on Continuum Electrostatics.

Jean-François Truchon1, Anthony Nicholls, Radu I Iftimie, Benoît Roux, Christopher I Bayly.   

Abstract

A novel approach for representing the intramolecular polarizability as a continuum dielectric is introduced to account for molecular electronic polarization. It is shown, using a finite-difference solution to the Poisson equation, that the Electronic Polarization from Internal Continuum (EPIC) model yields accurate gas-phase molecular polarizability tensors for a test set of 98 challenging molecules composed of heteroaromatics, alkanes and diatomics. The electronic polarization originates from a high intramolecular dielectric that produces polarizabilities consistent with B3LYP/aug-cc-pVTZ and experimental values when surrounded by vacuum dielectric. In contrast to other approaches to model electronic polarization, this simple model avoids the polarizability catastrophe and accurately calculates molecular anisotropy with the use of very few fitted parameters and without resorting to auxiliary sites or anisotropic atomic centers. On average, the unsigned error in the average polarizability and anisotropy compared to B3LYP are 2% and 5%, respectively. The correlation between the polarizability components from B3LYP and this approach lead to a R2 of 0.990 and a slope of 0.999. Even the F2 anisotropy, shown to be a difficult case for existing polarizability models, can be reproduced within 2% error. In addition to providing new parameters for a rapid method directly applicable to the calculation of polarizabilities, this work extends the widely used Poisson equation to areas where accurate molecular polarizabilities matter.

Entities:  

Year:  2008        PMID: 23646034      PMCID: PMC3640596          DOI: 10.1021/ct800123c

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  18 in total

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Authors:  F Fogolari; A Brigo; H Molinari
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3.  The Effect of Polarizability for Understanding the Molecular Structure of Aqueous Interfaces.

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4.  Polarizability and second hyperpolarizability evaluation of long molecules by the density functional theory with long-range correction.

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5.  Solvated interaction energy (SIE) for scoring protein-ligand binding affinities. 1. Exploring the parameter space.

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Journal:  J Chem Inf Model       Date:  2007 Jan-Feb       Impact factor: 4.956

6.  Continuum treatment of electronic polarization effect.

Authors:  Yu-Hong Tan; Ray Luo
Journal:  J Chem Phys       Date:  2007-03-07       Impact factor: 3.488

7.  The polarizability of point-polarizable water models: density functional theory/molecular mechanics results.

Authors:  Bernhard Schropp; Paul Tavan
Journal:  J Phys Chem B       Date:  2008-01-17       Impact factor: 2.991

Review 8.  Classical electrostatics in biology and chemistry.

Authors:  B Honig; A Nicholls
Journal:  Science       Date:  1995-05-26       Impact factor: 47.728

9.  Molecular dynamics study of hydration in ethanol-water mixtures using a polarizable force field.

Authors:  Sergei Yu Noskov; Guillaume Lamoureux; Benoît Roux
Journal:  J Phys Chem B       Date:  2005-04-14       Impact factor: 2.991

10.  Understanding the dielectric properties of liquid amides from a polarizable force field.

Authors:  Edward Harder; Victor M Anisimov; Troy Whitfield; Alexander D MacKerell; Benoît Roux
Journal:  J Phys Chem B       Date:  2008-02-27       Impact factor: 2.991

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  6 in total

Review 1.  Classical electrostatics for biomolecular simulations.

Authors:  G Andrés Cisneros; Mikko Karttunen; Pengyu Ren; Celeste Sagui
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2.  A finite field method for calculating molecular polarizability tensors for arbitrary multipole rank.

Authors:  Dennis M Elking; Lalith Perera; Robert Duke; Thomas Darden; Lee G Pedersen
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3.  Numerical study on the partitioning of the molecular polarizability into fluctuating charge and induced atomic dipole contributions.

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Journal:  J Phys Chem A       Date:  2015-05-18       Impact factor: 2.781

4.  Polarization effects in molecular mechanical force fields.

Authors:  Piotr Cieplak; François-Yves Dupradeau; Yong Duan; Junmei Wang
Journal:  J Phys Condens Matter       Date:  2009-07-24       Impact factor: 2.333

5.  Using electronic polarization from the internal continuum (EPIC) for intermolecular interactions.

Authors:  Jean-François Truchon; Anthony Nicholl's; J Andrew Grant; Radu I Iftimie; Benoît Roux; Christopher I Bayly
Journal:  J Comput Chem       Date:  2010-03       Impact factor: 3.376

6.  Toward Automated Benchmarking of Atomistic Force Fields: Neat Liquid Densities and Static Dielectric Constants from the ThermoML Data Archive.

Authors:  Kyle A Beauchamp; Julie M Behr; Ariën S Rustenburg; Christopher I Bayly; Kenneth Kroenlein; John D Chodera
Journal:  J Phys Chem B       Date:  2015-09-29       Impact factor: 2.991

  6 in total

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