Literature DB >> 16851754

Molecular dynamics study of hydration in ethanol-water mixtures using a polarizable force field.

Sergei Yu Noskov1, Guillaume Lamoureux, Benoît Roux.   

Abstract

The abnormal physicochemical characteristics of ethanol solvation in water are commonly attributed to the phenomenon of hydrophobic hydration. To investigate the structural organization of hydrophobic hydration in water-ethanol mixtures, we use molecular dynamics simulations based on detailed atomic models. Induced polarization is incorporated into the potential function on the basis of the classical Drude oscillator model. Water-ethanol mixtures are simulated at 11 ethanol molar fractions, from 0.05 to 0.9. Although the water and ethanol models are parametrized separately to reproduce the vaporization enthalpy, static dielectric constant, and self-diffusion constant of neat liquids at ambient conditions, they also reproduce the energetic and dynamical properties of the mixtures accurately. Furthermore, the calculated dielectric constant for the various water-alcohol mixtures is in excellent agreement with experimental data. The simulations provide a detailed structural characterization of the mixtures. A depletion of water-water hydrogen bonding in the first hydration shell of ethanol is compensated by an enhancement in the second hydration shell. The structuring effect from the second solvation shell gives rise to a net positive hydrogen-bonding excess for ethanol molar fractions up to approximately 0.5. For larger molar fractions, the second hydration shell is not sufficiently populated to overcome the net H-bond depletion from the first shell.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16851754     DOI: 10.1021/jp045438q

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  34 in total

1.  Toward Learned Chemical Perception of Force Field Typing Rules.

Authors:  Camila Zanette; Caitlin C Bannan; Christopher I Bayly; Josh Fass; Michael K Gilson; Michael R Shirts; John D Chodera; David L Mobley
Journal:  J Chem Theory Comput       Date:  2018-12-24       Impact factor: 6.006

2.  Doubly amphiphilic poly(2-oxazoline)s as high-capacity delivery systems for hydrophobic drugs.

Authors:  Robert Luxenhofer; Anita Schulz; Caroline Roques; Shu Li; Tatiana K Bronich; Elena V Batrakova; Rainer Jordan; Alexander V Kabanov
Journal:  Biomaterials       Date:  2010-03-26       Impact factor: 12.479

3.  7-Cyanoindole fluorescence as a local hydration reporter: application to probe the microheterogeneity of nine water-organic binary mixtures.

Authors:  Debopreeti Mukherjee; Lilliana I Ortiz Rodriguez; Mary Rose Hilaire; Thomas Troxler; Feng Gai
Journal:  Phys Chem Chem Phys       Date:  2018-01-09       Impact factor: 3.676

4.  Polarizable empirical force field for aromatic compounds based on the classical drude oscillator.

Authors:  Pedro E M Lopes; Guillaume Lamoureux; Benoît Roux; Alexander D Mackerell
Journal:  J Phys Chem B       Date:  2007-02-27       Impact factor: 2.991

5.  Steric selectivity in Na channels arising from protein polarization and mobile side chains.

Authors:  Dezso Boda; Wolfgang Nonner; Mónika Valiskó; Douglas Henderson; Bob Eisenberg; Dirk Gillespie
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

6.  Thermodynamic and structural properties of methanol-water solutions using nonadditive interaction models.

Authors:  Yang Zhong; G Lee Warren; Sandeep Patel
Journal:  J Comput Chem       Date:  2008-05       Impact factor: 3.376

Review 7.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

8.  Continuum polarizable force field within the Poisson-Boltzmann framework.

Authors:  Yu-Hong Tan; Chunhu Tan; Junmei Wang; Ray Luo
Journal:  J Phys Chem B       Date:  2008-05-29       Impact factor: 2.991

9.  Polarizable empirical force field for the primary and secondary alcohol series based on the classical Drude model.

Authors:  Victor M Anisimov; Igor V Vorobyov; Benoît Roux; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2007       Impact factor: 6.006

10.  Interfacial structure, thermodynamics, and electrostatics of aqueous methanol solutions via molecular dynamics simulations using charge equilibration models.

Authors:  Sandeep Patel; Yang Zhong; Brad A Bauer; Joseph E Davis
Journal:  J Phys Chem B       Date:  2009-07-09       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.