Literature DB >> 18198859

The polarizability of point-polarizable water models: density functional theory/molecular mechanics results.

Bernhard Schropp1, Paul Tavan.   

Abstract

Molecular dynamics (MD) simulations of bulk liquid water at different thermodynamic conditions or of biomolecules in aqueous solution require a molecular mechanics (MM) force field that accounts for the sizable electronic polarizability alpha of the water molecule. A considerable number of such polarizable water models has been suggested in the past. Most of them agree that one should employ the experimental value alpha(exp) for the electronic polarizability and compute the induced dipole moment micro(i) through linear response from the electric field E at the position r(o) of the oxygen atom. However, several more recent models have suggested somewhat smaller values for alpha. Using a hybrid method that combines density functional theory for a selected water molecule with an MM description of its liquid water environment, here we show that the choice of alpha(exp) is solely correct if the induced dipole moment mui is calculated from the average electric field E within the volume occupied by the given water molecule. Because of considerable field inhomogeneities caused by the structured aqueous environment, the average field E is much smaller than the local spot check E(r(o)). However, as opposed to E(r(o)), the average field E cannot be easily calculated in MM-MD simulations. Therefore, in polarizable MM water models, one should calculate the induced dipole moment micro(i) from E(r(o)) through the reduced polarizability alpha(eff) = 0.68alpha(exp), which then effectively accounts for the inhomogeneities of the electric field within the volume of a water molecule embedded in liquid water.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18198859     DOI: 10.1021/jp0757356

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  20 in total

1.  Quantum mechanical force field for water with explicit electronic polarization.

Authors:  Jaebeom Han; Michael J M Mazack; Peng Zhang; Donald G Truhlar; Jiali Gao
Journal:  J Chem Phys       Date:  2013-08-07       Impact factor: 3.488

2.  Drude polarizable force field for aliphatic ketones and aldehydes, and their associated acyclic carbohydrates.

Authors:  Meagan C Small; Asaminew H Aytenfisu; Fang-Yu Lin; Xibing He; Alexander D MacKerell
Journal:  J Comput Aided Mol Des       Date:  2017-02-11       Impact factor: 3.686

3.  Properties of water along the liquid-vapor coexistence curve via molecular dynamics simulations using the polarizable TIP4P-QDP-LJ water model.

Authors:  Brad A Bauer; Sandeep Patel
Journal:  J Chem Phys       Date:  2009-08-28       Impact factor: 3.488

4.  Molecular modeling and dynamics studies with explicit inclusion of electronic polarizability. Theory and applications.

Authors:  Pedro E M Lopes; Benoit Roux; Alexander D Mackerell
Journal:  Theor Chem Acc       Date:  2009-09       Impact factor: 1.702

5.  Nonadditive empirical force fields for short-chain linear alcohols: methanol to butanol. Hydration free energetics and Kirkwood-Buff analysis using charge equilibration models.

Authors:  Yang Zhong; Sandeep Patel
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

6.  Balanced polarizable Drude force field parameters for molecular anions: phosphates, sulfates, sulfamates, and oxides.

Authors:  Abhishek A Kognole; Asaminew H Aytenfisu; Alexander D MacKerell
Journal:  J Mol Model       Date:  2020-05-24       Impact factor: 1.810

7.  Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields.

Authors:  Dmitry Bedrov; Jean-Philip Piquemal; Oleg Borodin; Alexander D MacKerell; Benoît Roux; Christian Schröder
Journal:  Chem Rev       Date:  2019-05-29       Impact factor: 60.622

8.  Polarizability rescaling and atom-based Thole scaling in the CHARMM Drude polarizable force field for ethers.

Authors:  Christopher M Baker; Alexander D Mackerell
Journal:  J Mol Model       Date:  2009-08-25       Impact factor: 1.810

9.  Polarizable empirical force field for nitrogen-containing heteroaromatic compounds based on the classical Drude oscillator.

Authors:  Pedro E M Lopes; Guillaume Lamoureux; Alexander D Mackerell
Journal:  J Comput Chem       Date:  2009-09       Impact factor: 3.376

10.  Molecular dynamics simulations of nonpolarizable inorganic salt solution interfaces: NaCl, NaBr, and NaI in transferable intermolecular potential 4-point with charge dependent polarizability (TIP4P-QDP) water.

Authors:  Brad A Bauer; Sandeep Patel
Journal:  J Chem Phys       Date:  2010-01-14       Impact factor: 3.488

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.