| Literature DB >> 18198859 |
Bernhard Schropp1, Paul Tavan.
Abstract
Molecular dynamics (MD) simulations of bulk liquid water at different thermodynamic conditions or of biomolecules in aqueous solution require a molecular mechanics (MM) force field that accounts for the sizable electronic polarizability alpha of the water molecule. A considerable number of such polarizable water models has been suggested in the past. Most of them agree that one should employ the experimental value alpha(exp) for the electronic polarizability and compute the induced dipole moment micro(i) through linear response from the electric field E at the position r(o) of the oxygen atom. However, several more recent models have suggested somewhat smaller values for alpha. Using a hybrid method that combines density functional theory for a selected water molecule with an MM description of its liquid water environment, here we show that the choice of alpha(exp) is solely correct if the induced dipole moment mui is calculated from the average electric field E within the volume occupied by the given water molecule. Because of considerable field inhomogeneities caused by the structured aqueous environment, the average field E is much smaller than the local spot check E(r(o)). However, as opposed to E(r(o)), the average field E cannot be easily calculated in MM-MD simulations. Therefore, in polarizable MM water models, one should calculate the induced dipole moment micro(i) from E(r(o)) through the reduced polarizability alpha(eff) = 0.68alpha(exp), which then effectively accounts for the inhomogeneities of the electric field within the volume of a water molecule embedded in liquid water.Entities:
Mesh:
Substances:
Year: 2008 PMID: 18198859 DOI: 10.1021/jp0757356
Source DB: PubMed Journal: J Phys Chem B ISSN: 1520-5207 Impact factor: 2.991