Literature DB >> 23634118

(2E)-2-(3-Eth-oxy-2-hy-droxy-benzyl-idene)hydrazinecarboxamide.

A Ambili Aravindakshan1, M Sithambaresan, M R Prathapachandra Kurup.   

Abstract

The title compound, C10H13N3O3, adopts an E conformation with respect to the azomethine bond and crystallizes in the amide form. A classical intra-molecular O-H⋯N hydrogen bond is present. The two N atoms of the hydrazinecarboxamide unit are also involved in inter-molecular N-H⋯O hydrogen bonds, with the O atom of the hydrazinecarboxamide group acting as the acceptor. Pairs of N-H⋯O hydrogen bond link the mol-ecules into centrosymmetric dimers, which are linked by further N-H⋯O hydrogen bonds into chains along the b axis. The chains are linked by C-H⋯π inter-actions.

Entities:  

Year:  2013        PMID: 23634118      PMCID: PMC3629631          DOI: 10.1107/S1600536813007617

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of hydrazinecarboxamide and its derivatives, see: Afrasiabi et al. (2005 ▶); Siji et al. (2010 ▶); Beraldo & Gambino (2004 ▶). For related structures and background references, see: Sithambaresan & Kurup (2011 ▶); Noblía et al. (2004, ▶ 2005 ▶); Benítez et al. (2009 ▶, 2011 ▶); Rivadeneira et al. (2009 ▶); Gambino et al. (2011 ▶). For standard bond-length data, see: Allen et al. (1987 ▶); Kala et al. (2007 ▶). For the synthesis, see: Sreekanth et al. (2004 ▶).

Experimental

Crystal data

C10H13N3O3 M = 223.23 Triclinic, a = 5.0676 (4) Å b = 7.0426 (7) Å c = 15.8394 (15) Å α = 97.509 (4)° β = 98.819 (3)° γ = 105.790 (4)° V = 528.62 (8) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.969, T max = 0.979 2559 measured reflections 1794 independent reflections 1496 reflections with I > 2σ(I) R int = 0.011

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.109 S = 1.05 1794 reflections 163 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813007617/fj2621sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813007617/fj2621Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813007617/fj2621Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H13N3O3Z = 2
Mr = 223.23F(000) = 236.0
Triclinic, P1Dx = 1.403 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.0676 (4) ÅCell parameters from 1468 reflections
b = 7.0426 (7) Åθ = 3.1–27.8°
c = 15.8394 (15) ŵ = 0.11 mm1
α = 97.509 (4)°T = 296 K
β = 98.819 (3)°Needle, colorless
γ = 105.790 (4)°0.30 × 0.25 × 0.20 mm
V = 528.62 (8) Å3
Bruker Kappa APEXII CCD diffractometer1794 independent reflections
Radiation source: fine-focus sealed tube1496 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.011
Detector resolution: 8.33 pixels mm-1θmax = 25.0°, θmin = 2.7°
ω and φ scanh = −4→6
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −8→7
Tmin = 0.969, Tmax = 0.979l = −18→18
2559 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0603P)2 + 0.0879P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1794 reflectionsΔρmax = 0.15 e Å3
163 parametersΔρmin = −0.18 e Å3
5 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.043 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.0222 (2)0.77360 (18)0.14679 (8)0.0535 (4)
O20.4871 (2)0.95529 (17)0.25818 (8)0.0507 (4)
N31.1509 (3)1.3215 (2)0.44231 (10)0.0451 (4)
N10.9230 (2)0.92842 (19)0.36957 (8)0.0378 (3)
N21.1846 (3)1.0000 (2)0.42199 (9)0.0415 (4)
O31.5573 (2)1.25778 (16)0.48904 (8)0.0484 (3)
C10.4059 (3)0.7519 (2)0.24373 (10)0.0380 (4)
C20.1566 (3)0.6509 (2)0.18340 (10)0.0409 (4)
C30.0673 (3)0.4439 (3)0.16548 (11)0.0482 (4)
H3−0.09810.37730.12580.058*
C40.2212 (4)0.3340 (3)0.20585 (12)0.0518 (5)
H40.15930.19450.19320.062*
C50.4660 (3)0.4317 (3)0.26476 (11)0.0460 (4)
H50.56910.35760.29160.055*
C60.5613 (3)0.6415 (2)0.28465 (9)0.0374 (4)
C70.8283 (3)0.7384 (2)0.34449 (9)0.0383 (4)
H70.93360.65870.36520.046*
C81.3056 (3)1.1985 (2)0.45241 (9)0.0359 (4)
C9−0.2192 (3)0.6811 (3)0.07918 (11)0.0510 (5)
H9A−0.36080.58720.10050.061*
H9B−0.16940.60880.03070.061*
C10−0.3277 (4)0.8456 (3)0.05117 (13)0.0641 (6)
H10A−0.37750.91530.09960.096*
H10B−0.48970.78900.00540.096*
H10C−0.18540.93780.03050.096*
H21.274 (3)0.917 (2)0.4371 (11)0.045 (5)*
H2'0.642 (3)0.984 (3)0.2920 (12)0.079 (7)*
H3A1.223 (3)1.4467 (15)0.4605 (12)0.061 (6)*
H3B0.975 (2)1.278 (3)0.4271 (13)0.068 (6)*
U11U22U33U12U13U23
O10.0390 (6)0.0514 (8)0.0589 (7)0.0127 (5)−0.0154 (5)0.0016 (6)
O20.0410 (7)0.0387 (7)0.0609 (8)0.0109 (5)−0.0143 (5)−0.0013 (5)
N30.0284 (7)0.0373 (8)0.0621 (9)0.0075 (6)−0.0051 (6)0.0045 (7)
N10.0270 (7)0.0419 (8)0.0375 (7)0.0069 (5)−0.0039 (5)0.0016 (6)
N20.0284 (7)0.0392 (8)0.0493 (8)0.0102 (6)−0.0094 (5)0.0010 (6)
O30.0246 (6)0.0407 (7)0.0695 (8)0.0063 (5)−0.0086 (5)0.0021 (5)
C10.0323 (8)0.0383 (9)0.0383 (8)0.0081 (7)0.0016 (6)0.0009 (6)
C20.0315 (8)0.0461 (10)0.0405 (8)0.0107 (7)−0.0008 (6)0.0029 (7)
C30.0345 (9)0.0492 (10)0.0474 (9)0.0026 (7)−0.0057 (7)−0.0013 (7)
C40.0468 (10)0.0385 (9)0.0569 (10)0.0015 (8)−0.0026 (8)0.0018 (8)
C50.0434 (9)0.0411 (9)0.0471 (9)0.0086 (7)−0.0022 (7)0.0075 (7)
C60.0316 (8)0.0418 (9)0.0341 (8)0.0075 (7)0.0018 (6)0.0032 (6)
C70.0341 (8)0.0392 (9)0.0381 (8)0.0108 (7)−0.0012 (6)0.0050 (7)
C80.0270 (7)0.0386 (8)0.0382 (8)0.0075 (6)0.0006 (6)0.0053 (6)
C90.0367 (9)0.0647 (12)0.0425 (9)0.0128 (8)−0.0072 (7)−0.0004 (8)
C100.0483 (11)0.0769 (14)0.0604 (12)0.0167 (10)−0.0099 (9)0.0168 (10)
O1—C21.3697 (19)C3—C41.386 (2)
O1—C91.4319 (18)C3—H30.9300
O2—C11.3558 (19)C4—C51.377 (2)
O2—H2'0.837 (10)C4—H40.9300
N3—C81.326 (2)C5—C61.400 (2)
N3—H3A0.849 (9)C5—H50.9300
N3—H3B0.846 (9)C6—C71.459 (2)
N1—C71.278 (2)C7—H70.9300
N1—N21.3749 (17)C9—C101.499 (3)
N2—C81.352 (2)C9—H9A0.9700
N2—H20.869 (9)C9—H9B0.9700
O3—C81.2481 (17)C10—H10A0.9600
C1—C61.397 (2)C10—H10B0.9600
C1—C21.407 (2)C10—H10C0.9600
C2—C31.380 (2)
C2—O1—C9117.61 (13)C6—C5—H5119.7
C1—O2—H2'102.2 (16)C1—C6—C5119.31 (14)
C8—N3—H3A120.2 (13)C1—C6—C7121.94 (14)
C8—N3—H3B121.7 (13)C5—C6—C7118.68 (14)
H3A—N3—H3B117.1 (17)N1—C7—C6122.59 (14)
C7—N1—N2116.34 (13)N1—C7—H7118.7
C8—N2—N1121.45 (13)C6—C7—H7118.7
C8—N2—H2118.6 (12)O3—C8—N3122.89 (15)
N1—N2—H2120.0 (12)O3—C8—N2118.66 (13)
O2—C1—C6122.85 (14)N3—C8—N2118.45 (13)
O2—C1—C2117.48 (14)O1—C9—C10107.13 (15)
C6—C1—C2119.66 (15)O1—C9—H9A110.3
O1—C2—C3125.56 (14)C10—C9—H9A110.3
O1—C2—C1114.78 (14)O1—C9—H9B110.3
C3—C2—C1119.66 (14)C10—C9—H9B110.3
C2—C3—C4120.82 (15)H9A—C9—H9B108.5
C2—C3—H3119.6C9—C10—H10A109.5
C4—C3—H3119.6C9—C10—H10B109.5
C5—C4—C3119.85 (16)H10A—C10—H10B109.5
C5—C4—H4120.1C9—C10—H10C109.5
C3—C4—H4120.1H10A—C10—H10C109.5
C4—C5—C6120.70 (15)H10B—C10—H10C109.5
C4—C5—H5119.7
C7—N1—N2—C8−179.98 (14)C2—C1—C6—C50.1 (2)
C9—O1—C2—C3−5.3 (2)O2—C1—C6—C7−1.8 (2)
C9—O1—C2—C1174.53 (14)C2—C1—C6—C7176.94 (13)
O2—C1—C2—O1−0.8 (2)C4—C5—C6—C1−0.3 (3)
C6—C1—C2—O1−179.55 (13)C4—C5—C6—C7−177.26 (14)
O2—C1—C2—C3179.03 (14)N2—N1—C7—C6−176.32 (13)
C6—C1—C2—C30.3 (2)C1—C6—C7—N16.9 (2)
O1—C2—C3—C4179.43 (16)C5—C6—C7—N1−176.21 (15)
C1—C2—C3—C4−0.4 (3)N1—N2—C8—O3−169.81 (13)
C2—C3—C4—C50.1 (3)N1—N2—C8—N310.5 (2)
C3—C4—C5—C60.2 (3)C2—O1—C9—C10179.40 (14)
O2—C1—C6—C5−178.64 (14)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O3i0.85 (1)2.06 (1)2.9034 (19)173 (2)
O2—H2′···N10.84 (1)1.89 (1)2.6736 (15)155 (2)
N2—H2···O3ii0.87 (1)2.06 (1)2.8965 (17)161 (2)
C9—H9A···Cgiii0.972.753.5896 (19)145
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1–C6 ring

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3A⋯O3i 0.85 (1)2.06 (1)2.9034 (19)173 (2)
O2—H2′⋯N10.84 (1)1.89 (1)2.6736 (15)155 (2)
N2—H2⋯O3ii 0.87 (1)2.06 (1)2.8965 (17)161 (2)
C9—H9ACg iii 0.972.753.5896 (19)145

Symmetry codes: (i) ; (ii) ; (iii) .

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