Literature DB >> 23624145

Poly-ADP-ribose polymerase: machinery for nuclear processes.

Colin Thomas1, Alexei V Tulin.   

Abstract

It is becoming increasingly clear that the nuclear protein, poly-ADP-ribose polymerase 1 (PARP1), plays essential roles in the cell, including DNA repair, translation, transcription, telomere maintenance, and chromatin remodeling. Despite the exciting progress made in understanding the ubiquitous role of poly-ADP-ribose metabolism, a basic mechanism of PARP's activity regulating multiple nuclear processes is yet to be outlined. This review offers a holistic perspective on activity of PARP1, based on empirically observable phenomena. Primary attention is given to mechanisms by which PARP1 regulates a broad range of essential nuclear events, including two complementary processes (1) regulation of protein-nucleic acid interactions by means of protein shuttling and (2) utilizing poly-ADP-ribose as an anionic matrix for trapping, recruiting, and scaffolding proteins.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Chromatin; Histones; Nucleosome; PARP1; Parg; Poly(ADP-ribose)

Mesh:

Substances:

Year:  2013        PMID: 23624145      PMCID: PMC3750069          DOI: 10.1016/j.mam.2013.04.001

Source DB:  PubMed          Journal:  Mol Aspects Med        ISSN: 0098-2997


  97 in total

1.  The Zn3 domain of human poly(ADP-ribose) polymerase-1 (PARP-1) functions in both DNA-dependent poly(ADP-ribose) synthesis activity and chromatin compaction.

Authors:  Marie-France Langelier; Donald D Ruhl; Jamie L Planck; W Lee Kraus; John M Pascal
Journal:  J Biol Chem       Date:  2010-04-13       Impact factor: 5.157

2.  Drosophila histone H2A variant (H2Av) controls poly(ADP-ribose) polymerase 1 (PARP1) activation in chromatin.

Authors:  Elena Kotova; Niraj Lodhi; Michael Jarnik; Aaron D Pinnola; Yingbiao Ji; Alexei V Tulin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

3.  Uncoupling of the transactivation and transrepression functions of PARP1 protein.

Authors:  Elena Kotova; Michael Jarnik; Alexei V Tulin
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

4.  Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler.

Authors:  Aaron J Gottschalk; Gyula Timinszky; Stephanie E Kong; Jingji Jin; Yong Cai; Selene K Swanson; Michael P Washburn; Laurence Florens; Andreas G Ladurner; Joan W Conaway; Ronald C Conaway
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-06       Impact factor: 11.205

Review 5.  Epigenetics: poly(ADP-ribosyl)ation of PARP-1 regulates genomic methylation patterns.

Authors:  Paola Caiafa; Tiziana Guastafierro; Michele Zampieri
Journal:  FASEB J       Date:  2008-11-11       Impact factor: 5.191

6.  Poly(ADP-ribose)-dependent regulation of DNA repair by the chromatin remodeling enzyme ALC1.

Authors:  Dragana Ahel; Zuzana Horejsí; Nicola Wiechens; Sophie E Polo; Elisa Garcia-Wilson; Ivan Ahel; Helen Flynn; Mark Skehel; Stephen C West; Stephen P Jackson; Tom Owen-Hughes; Simon J Boulton
Journal:  Science       Date:  2009-08-06       Impact factor: 47.728

7.  Poly (ADP-ribose) polymerase 1 is required for protein localization to Cajal body.

Authors:  Elena Kotova; Michael Jarnik; Alexei V Tulin
Journal:  PLoS Genet       Date:  2009-02-20       Impact factor: 5.917

8.  Proteome-wide identification of poly(ADP-ribose) binding proteins and poly(ADP-ribose)-associated protein complexes.

Authors:  Jean-Philippe Gagné; Maxim Isabelle; Ken Sin Lo; Sylvie Bourassa; Michael J Hendzel; Valina L Dawson; Ted M Dawson; Guy G Poirier
Journal:  Nucleic Acids Res       Date:  2008-11-03       Impact factor: 16.971

9.  The nucleosome-remodeling ATPase ISWI is regulated by poly-ADP-ribosylation.

Authors:  Anna Sala; Gaspare La Rocca; Giosalba Burgio; Elena Kotova; Dario Di Gesù; Marianna Collesano; Antonia M R Ingrassia; Alexei V Tulin; Davide F V Corona
Journal:  PLoS Biol       Date:  2008-10-14       Impact factor: 8.029

10.  Poly(ADP-ribosyl)ation of heterogeneous nuclear ribonucleoproteins modulates splicing.

Authors:  Yingbiao Ji; Alexei V Tulin
Journal:  Nucleic Acids Res       Date:  2009-04-03       Impact factor: 16.971

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  41 in total

1.  SRY interference of normal regulation of the RET gene suggests a potential role of the Y-chromosome gene in sexual dimorphism in Hirschsprung disease.

Authors:  Yunmin Li; Tatsuo Kido; Maria M Garcia-Barcelo; Paul K H Tam; Z Laura Tabatabai; Yun-Fai Chris Lau
Journal:  Hum Mol Genet       Date:  2014-09-28       Impact factor: 6.150

Review 2.  Opportunities for the repurposing of PARP inhibitors for the therapy of non-oncological diseases.

Authors:  Nathan A Berger; Valerie C Besson; A Hamid Boulares; Alexander Bürkle; Alberto Chiarugi; Robert S Clark; Nicola J Curtin; Salvatore Cuzzocrea; Ted M Dawson; Valina L Dawson; György Haskó; Lucas Liaudet; Flavio Moroni; Pál Pacher; Peter Radermacher; Andrew L Salzman; Solomon H Snyder; Francisco Garcia Soriano; Robert P Strosznajder; Balázs Sümegi; Raymond A Swanson; Csaba Szabo
Journal:  Br J Pharmacol       Date:  2017-03-26       Impact factor: 8.739

3.  Non-NAD-like PARP-1 inhibitors in prostate cancer treatment.

Authors:  Yaroslava Karpova; Chao Wu; Ali Divan; Mark E McDonnell; Elizabeth Hewlett; Peter Makhov; John Gordon; Min Ye; Allen B Reitz; Wayne E Childers; Tomasz Skorski; Vladimir Kolenko; Alexei V Tulin
Journal:  Biochem Pharmacol       Date:  2019-03-15       Impact factor: 5.858

4.  Association between single-nucleotide polymorphisms in DNA double-strand break repair genes and prostate cancer aggressiveness in the Spanish population.

Authors:  L A Henríquez-Hernández; A Valenciano; P Foro-Arnalot; M J Álvarez-Cubero; J M Cozar; J F Suárez-Novo; M Castells-Esteve; P Fernández-Gonzalo; B De-Paula-Carranza; M Ferrer; F Guedea; G Sancho-Pardo; J Craven-Bartle; M J Ortiz-Gordillo; P Cabrera-Roldán; J I Rodríguez-Melcón; E Herrera-Ramos; C Rodríguez-Gallego; P C Lara
Journal:  Prostate Cancer Prostatic Dis       Date:  2016-01-12       Impact factor: 5.554

Review 5.  Coordination of DNA single strand break repair.

Authors:  Rachel Abbotts; David M Wilson
Journal:  Free Radic Biol Med       Date:  2016-11-24       Impact factor: 7.376

Review 6.  Human RecQ helicases in DNA repair, recombination, and replication.

Authors:  Deborah L Croteau; Venkateswarlu Popuri; Patricia L Opresko; Vilhelm A Bohr
Journal:  Annu Rev Biochem       Date:  2014-03-03       Impact factor: 23.643

7.  Nuclear ULK1 promotes cell death in response to oxidative stress through PARP1.

Authors:  A Joshi; R Iyengar; J H Joo; X J Li-Harms; C Wright; R Marino; B J Winborn; A Phillips; J Temirov; S Sciarretta; R Kriwacki; J Peng; A Shelat; M Kundu
Journal:  Cell Death Differ       Date:  2015-07-03       Impact factor: 15.828

8.  [(18)F]FluorThanatrace uptake as a marker of PARP1 expression and activity in breast cancer.

Authors:  Christine E Edmonds; Mehran Makvandi; Brian P Lieberman; Kuiying Xu; Chenbo Zeng; Shihong Li; Catherine Hou; Hsiaoju Lee; Roger A Greenberg; David A Mankoff; Robert H Mach
Journal:  Am J Nucl Med Mol Imaging       Date:  2016-01-28

9.  Small-Molecule Disruption of RAD52 Rings as a Mechanism for Precision Medicine in BRCA-Deficient Cancers.

Authors:  Gurushankar Chandramouly; Shane McDevitt; Katherine Sullivan; Tatiana Kent; Antonio Luz; J Fraser Glickman; Mark Andrake; Tomasz Skorski; Richard T Pomerantz
Journal:  Chem Biol       Date:  2015-11-05

10.  Mitotic bookmarking: maintaining post-mitotic reprogramming of transcription reactivation.

Authors:  Niraj Lodhi; Yingbiao Ji; Alexei Tulin
Journal:  Curr Mol Biol Rep       Date:  2016-02-05
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