Literature DB >> 23609089

Functional RNAs exhibit tolerance for non-heritable 2'-5' versus 3'-5' backbone heterogeneity.

Aaron E Engelhart1, Matthew W Powner, Jack W Szostak.   

Abstract

A plausible process for non-enzymatic RNA replication would greatly simplify models of the transition from prebiotic chemistry to simple biology. However, all known conditions for the chemical copying of an RNA template result in the synthesis of a complementary strand that contains a mixture of 2'-5' and 3'-5' linkages, rather than the selective synthesis of only 3'-5' linkages as found in contemporary RNA. Here we show that such backbone heterogeneity is compatible with RNA folding into defined three-dimensional structures that retain molecular recognition and catalytic properties and, therefore, would not prevent the evolution of functional RNAs such as ribozymes. Moreover, the same backbone heterogeneity lowers the melting temperature of RNA duplexes that would otherwise be too stable for thermal strand separation. By allowing copied strands to dissociate, this heterogeneity may have been one of the essential features that allowed RNA to emerge as the first biopolymer.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23609089      PMCID: PMC4088963          DOI: 10.1038/nchem.1623

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  37 in total

1.  Ribozyme cleavage of a 2,5-phosphodiester linkage: mechanism and a restricted divalent metal-ion requirement.

Authors:  I H Shih; M D Been
Journal:  RNA       Date:  1999-09       Impact factor: 4.942

2.  RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension.

Authors:  W K Johnston; P J Unrau; M S Lawrence; M E Glasner; D P Bartel
Journal:  Science       Date:  2001-05-18       Impact factor: 47.728

3.  Glyoxylate as a backbone linkage for a prebiotic ancestor of RNA.

Authors:  Heather D Bean; Frank A L Anet; Ian R Gould; Nicholas V Hud
Journal:  Orig Life Evol Biosph       Date:  2006-02       Impact factor: 1.950

4.  Physicochemical and biochemical properties of 2',5'-linked RNA and 2',5'-RNA:3',5'-RNA "hybrid" duplexes.

Authors:  M Wasner; D Arion; G Borkow; A Noronha; A H Uddin; M A Parniak; M J Damha
Journal:  Biochemistry       Date:  1998-05-19       Impact factor: 3.162

5.  Reverse transcriptase reads through a 2'-5'linkage and a 2'-thiophosphate in a template.

Authors:  J R Lorsch; D P Bartel; J W Szostak
Journal:  Nucleic Acids Res       Date:  1995-08-11       Impact factor: 16.971

6.  Efficient enzyme-free copying of all four nucleobases templated by immobilized RNA.

Authors:  Christopher Deck; Mario Jauker; Clemens Richert
Journal:  Nat Chem       Date:  2011-07-10       Impact factor: 24.427

7.  Oligomerization of (guanosine 5'-phosphor)-2-methylimidazolide on poly(C). An RNA polymerase model.

Authors:  T Inoue; L E Orgel
Journal:  J Mol Biol       Date:  1982-11-25       Impact factor: 5.469

Review 8.  Primitive genetic polymers.

Authors:  Aaron E Engelhart; Nicholas V Hud
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-12       Impact factor: 10.005

9.  Nonenzymatic oligomerization on templates containing phosphodiester-linked acyclic glycerol nucleic acid analogues.

Authors:  J C Chaput; C Switzer
Journal:  J Mol Evol       Date:  2000-11       Impact factor: 2.395

10.  Chemoselective multicomponent one-pot assembly of purine precursors in water.

Authors:  Matthew W Powner; John D Sutherland; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2010-11-02       Impact factor: 15.419

View more
  36 in total

1.  Impact of template backbone heterogeneity on RNA polymerase II transcription.

Authors:  Liang Xu; Wei Wang; Lu Zhang; Jenny Chong; Xuhui Huang; Dong Wang
Journal:  Nucleic Acids Res       Date:  2015-02-06       Impact factor: 16.971

2.  Novel applications of physical autocatalysis.

Authors:  Andrew J Bissette; Stephen P Fletcher
Journal:  Orig Life Evol Biosph       Date:  2015-02-27       Impact factor: 1.950

3.  The ascent of molecules.

Authors: 
Journal:  Nat Chem       Date:  2013-05       Impact factor: 24.427

4.  Chemical origins of life: Prebiotic RNA unstuck.

Authors:  Armando R Hernández; Joseph A Piccirilli
Journal:  Nat Chem       Date:  2013-05       Impact factor: 24.427

5.  Asking original questions. Interview by Stephen Davey.

Authors:  Matthew Powner
Journal:  Nat Chem       Date:  2013-05       Impact factor: 24.427

6.  Strand-specific (asymmetric) contribution of phosphodiester linkages on RNA polymerase II transcriptional efficiency and fidelity.

Authors:  Liang Xu; Lu Zhang; Jenny Chong; Jun Xu; Xuhui Huang; Dong Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-29       Impact factor: 11.205

7.  Chiral encoding may provide a simple solution to the origin of life.

Authors:  Ashley Brewer; Anthony P Davis
Journal:  Nat Chem       Date:  2014-07       Impact factor: 24.427

8.  Structural insights into the effects of 2'-5' linkages on the RNA duplex.

Authors:  Jia Sheng; Li Li; Aaron E Engelhart; Jianhua Gan; Jiawei Wang; Jack W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-10       Impact factor: 11.205

9.  Hybrid DNA/RNA nanostructures with 2'-5' linkages.

Authors:  Arun Richard Chandrasekaran; Johnsi Mathivanan; Parisa Ebrahimi; Javier Vilcapoma; Alan A Chen; Ken Halvorsen; Jia Sheng
Journal:  Nanoscale       Date:  2020-11-05       Impact factor: 7.790

10.  Effect of 2'-5'/3'-5' phosphodiester linkage heterogeneity on RNA interference.

Authors:  Maryam Habibian; S Harikrishna; Johans Fakhoury; Maria Barton; Eman A Ageely; Regina Cencic; Hassan H Fakih; Adam Katolik; Mayumi Takahashi; John Rossi; Jerry Pelletier; Keith T Gagnon; P I Pradeepkumar; Masad J Damha
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.