Literature DB >> 20462999

Primitive genetic polymers.

Aaron E Engelhart1, Nicholas V Hud.   

Abstract

Since the structure of DNA was elucidated more than 50 years ago, Watson-Crick base pairing has been widely speculated to be the likely mode of both information storage and transfer in the earliest genetic polymers. The discovery of catalytic RNA molecules subsequently provided support for the hypothesis that RNA was perhaps even the first polymer of life. However, the de novo synthesis of RNA using only plausible prebiotic chemistry has proven difficult, to say the least. Experimental investigations, made possible by the application of synthetic and physical organic chemistry, have now provided evidence that the nucleobases (A, G, C, and T/U), the trifunctional moiety ([deoxy]ribose), and the linkage chemistry (phosphate esters) of contemporary nucleic acids may be optimally suited for their present roles-a situation that suggests refinement by evolution. Here, we consider studies of variations in these three distinct components of nucleic acids with regard to the question: Is RNA, as is generally acknowledged of DNA, the product of evolution? If so, what chemical and structural features might have been more likely and advantageous for a proto-RNA?

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Year:  2010        PMID: 20462999      PMCID: PMC2982173          DOI: 10.1101/cshperspect.a002196

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  111 in total

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Review 2.  Gene regulation by riboswitches.

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Journal:  Nat Rev Mol Cell Biol       Date:  2004-06       Impact factor: 94.444

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Authors:  Carole Anastasi; Michael A Crowe; Matthew W Powner; John D Sutherland
Journal:  Angew Chem Int Ed Engl       Date:  2006-09-18       Impact factor: 15.336

4.  An alternative nucleobase code: characterization of purine-purine DNA double helices bearing guanine-isoguanine and diaminopurine 7-deaza-xanthine base pairs.

Authors:  Benjamin D Heuberger; Christopher Switzer
Journal:  Chembiochem       Date:  2008-11-24       Impact factor: 3.164

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Authors:  G F Joyce; A W Schwartz; S L Miller; L E Orgel
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

6.  Origin of life. A simpler nucleic acid.

Authors:  L Orgel
Journal:  Science       Date:  2000-11-17       Impact factor: 47.728

7.  Self-replication of complementary nucleotide-based oligomers.

Authors:  D Sievers; G von Kiedrowski
Journal:  Nature       Date:  1994-05-19       Impact factor: 49.962

8.  Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

Authors:  Matthew W Powner; Béatrice Gerland; John D Sutherland
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

9.  Solution structure of a peptide nucleic acid duplex from NMR data: features and limitations.

Authors:  Wei He; Elizabeth Hatcher; Alexander Balaeff; David N Beratan; Roberto R Gil; Marcela Madrid; Catalina Achim
Journal:  J Am Chem Soc       Date:  2008-09-10       Impact factor: 15.419

10.  Condensation reaction of hexanucleotides containing guanine and cytosine with water soluble carbodiimide.

Authors:  K Kawamura; F Okamoto
Journal:  Nucleic Acids Symp Ser       Date:  2000
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  25 in total

1.  Potential pitfalls in MALDI-TOF MS analysis of abiotically synthesized RNA oligonucleotides.

Authors:  Bradley T Burcar; Lauren M Cassidy; Elizabeth M Moriarty; Prakash C Joshi; Kristin M Coari; Linda B McGown
Journal:  Orig Life Evol Biosph       Date:  2013-06-22       Impact factor: 1.950

2.  Evolution of functional nucleic acids in the presence of nonheritable backbone heterogeneity.

Authors:  Simon G Trevino; Na Zhang; Mark P Elenko; Andrej Lupták; Jack W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

3.  Orotidine-Containing RNA: Implications for the Hierarchical Selection (Systems Chemistry Emergence) of RNA.

Authors:  Eun-Kyong Kim; Vincent Martin; Ramanarayanan Krishnamurthy
Journal:  Chemistry       Date:  2017-08-11       Impact factor: 5.236

Review 4.  The algorithmic origins of life.

Authors:  Sara Imari Walker; Paul C W Davies
Journal:  J R Soc Interface       Date:  2012-12-12       Impact factor: 4.118

5.  Refining the genetic alphabet: a late-period selection pressure?

Authors:  Andro C Rios; Yitzhak Tor
Journal:  Astrobiology       Date:  2012-09       Impact factor: 4.335

Review 6.  The Astrobiology Primer v2.0.

Authors:  Shawn D Domagal-Goldman; Katherine E Wright; Katarzyna Adamala; Leigh Arina de la Rubia; Jade Bond; Lewis R Dartnell; Aaron D Goldman; Kennda Lynch; Marie-Eve Naud; Ivan G Paulino-Lima; Kelsi Singer; Marina Walther-Antonio; Ximena C Abrevaya; Rika Anderson; Giada Arney; Dimitra Atri; Armando Azúa-Bustos; Jeff S Bowman; William J Brazelton; Gregory A Brennecka; Regina Carns; Aditya Chopra; Jesse Colangelo-Lillis; Christopher J Crockett; Julia DeMarines; Elizabeth A Frank; Carie Frantz; Eduardo de la Fuente; Douglas Galante; Jennifer Glass; Damhnait Gleeson; Christopher R Glein; Colin Goldblatt; Rachel Horak; Lev Horodyskyj; Betül Kaçar; Akos Kereszturi; Emily Knowles; Paul Mayeur; Shawn McGlynn; Yamila Miguel; Michelle Montgomery; Catherine Neish; Lena Noack; Sarah Rugheimer; Eva E Stüeken; Paulina Tamez-Hidalgo; Sara Imari Walker; Teresa Wong
Journal:  Astrobiology       Date:  2016-08       Impact factor: 4.335

7.  Subsumed complexity: abiogenesis as a by-product of complex energy transduction.

Authors:  Z R Adam; D Zubarev; M Aono; H James Cleaves
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-12-28       Impact factor: 4.226

8.  Chiral Monomers Ensure Orientational Specificity of Monomer Binding During Polymer Self-Replication.

Authors:  Hemachander Subramanian; Robert A Gatenby
Journal:  J Mol Evol       Date:  2018-05-03       Impact factor: 2.395

9.  Evolutionary advantage of directional symmetry breaking in self-replicating polymers.

Authors:  Hemachander Subramanian; Robert A Gatenby
Journal:  J Theor Biol       Date:  2018-03-12       Impact factor: 2.691

10.  Purine biosynthetic intermediate-containing ribose-phosphate polymers as evolutionary precursors to RNA.

Authors:  Harold S Bernhardt; Roger K Sandwick
Journal:  J Mol Evol       Date:  2014-09-02       Impact factor: 2.395

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