Literature DB >> 21778979

Efficient enzyme-free copying of all four nucleobases templated by immobilized RNA.

Christopher Deck1, Mario Jauker, Clemens Richert.   

Abstract

The transition from inanimate materials to the earliest forms of life must have involved multiplication of a catalytically active polymer that is able to replicate. The semiconservative replication that is characteristic of genetic information transfer requires strands that contain more than one type of nucleobase. Short strands of RNA can act as catalysts, but attempts to induce efficient self-copying of mixed sequences (containing four different nucleobases) have been unsuccessful with ribonucleotides. Here we show that inhibition by spent monomers, formed by the hydrolysis of the activated nucleotides, is the cause for incomplete extension of growing daughter strands on RNA templates. Immobilization of strands and periodic displacement of the solution containing the activated monomers overcome this inhibition. Any of the four nucleobases (A/C/G/U) is successfully copied in the absence of enzymes. We conclude therefore that in a prebiotic world, oligoribonucleotides may have formed and undergone self-copying on surfaces.

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Year:  2011        PMID: 21778979     DOI: 10.1038/nchem.1086

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  20 in total

1.  Chemical primer extension at submillimolar concentration of deoxynucleotides.

Authors:  Manuel Röthlingshöfer; Clemens Richert
Journal:  J Org Chem       Date:  2010-06-18       Impact factor: 4.354

2.  One-step, regioselective synthesis of up to 50-mers of RNA oligomers by montmorillonite catalysis.

Authors:  Wenhua Huang; James P Ferris
Journal:  J Am Chem Soc       Date:  2006-07-12       Impact factor: 15.419

3.  Efficient metal-ion catalyzed template-directed oligonucleotide synthesis.

Authors:  R Lohrmann; P K Bridson; L E Orgel
Journal:  Science       Date:  1980-06-27       Impact factor: 47.728

4.  Reverse transcriptase reads through a 2'-5'linkage and a 2'-thiophosphate in a template.

Authors:  J R Lorsch; D P Bartel; J W Szostak
Journal:  Nucleic Acids Res       Date:  1995-08-11       Impact factor: 16.971

5.  The limits of template-directed synthesis with nucleoside-5'-phosphoro(2-methyl)imidazolides.

Authors:  A R Hill; L E Orgel; T Wu
Journal:  Orig Life Evol Biosph       Date:  1993-12       Impact factor: 1.950

6.  Montmorillonite catalysis of 30-50 mer oligonucleotides: laboratory demonstration of potential steps in the origin of the RNA world.

Authors:  James P Ferris
Journal:  Orig Life Evol Biosph       Date:  2002-08       Impact factor: 1.950

7.  Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

Authors:  Matthew W Powner; Béatrice Gerland; John D Sutherland
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

8.  Effect of stalling after mismatches on the error catastrophe in nonenzymatic nucleic acid replication.

Authors:  Sudha Rajamani; Justin K Ichida; Tibor Antal; Douglas A Treco; Kevin Leu; Martin A Nowak; Jack W Szostak; Irene A Chen
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

Review 9.  Prebiotic chemistry and the origin of the RNA world.

Authors:  Leslie E Orgel
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Mar-Apr       Impact factor: 8.250

10.  Template-directed synthesis of a genetic polymer in a model protocell.

Authors:  Sheref S Mansy; Jason P Schrum; Mathangi Krishnamurthy; Sylvia Tobé; Douglas A Treco; Jack W Szostak
Journal:  Nature       Date:  2008-06-04       Impact factor: 49.962

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  54 in total

1.  Self-replication reactions dependent on tertiary interaction motifs in an RNA ligase ribozyme.

Authors:  Rei Ohmori; Hirohide Saito; Yoshiya Ikawa; Yoshihiko Fujita; Tan Inoue
Journal:  J Mol Evol       Date:  2011-11-12       Impact factor: 2.395

2.  Robust self-replication of combinatorial information via crystal growth and scission.

Authors:  Rebecca Schulman; Bernard Yurke; Erik Winfree
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-09       Impact factor: 11.205

Review 3.  The RNA World: molecular cooperation at the origins of life.

Authors:  Paul G Higgs; Niles Lehman
Journal:  Nat Rev Genet       Date:  2014-11-11       Impact factor: 53.242

4.  Chemical Evolution and the Evolutionary Definition of Life.

Authors:  Paul G Higgs
Journal:  J Mol Evol       Date:  2017-06-29       Impact factor: 2.395

5.  Asking original questions. Interview by Stephen Davey.

Authors:  Matthew Powner
Journal:  Nat Chem       Date:  2013-05       Impact factor: 24.427

6.  Chiral encoding may provide a simple solution to the origin of life.

Authors:  Ashley Brewer; Anthony P Davis
Journal:  Nat Chem       Date:  2014-07       Impact factor: 24.427

7.  The effect of leaving groups on binding and reactivity in enzyme-free copying of DNA and RNA.

Authors:  Eric Kervio; Marilyne Sosson; Clemens Richert
Journal:  Nucleic Acids Res       Date:  2016-05-27       Impact factor: 16.971

8.  Cascade of reduced speed and accuracy after errors in enzyme-free copying of nucleic acid sequences.

Authors:  Kevin Leu; Eric Kervio; Benedikt Obermayer; Rebecca M Turk-MacLeod; Caterina Yuan; Jesus-Mario Luevano; Eric Chen; Ulrich Gerland; Clemens Richert; Irene A Chen
Journal:  J Am Chem Soc       Date:  2012-12-21       Impact factor: 15.419

9.  The strength of the template effect attracting nucleotides to naked DNA.

Authors:  Eric Kervio; Birgit Claasen; Ulrich E Steiner; Clemens Richert
Journal:  Nucleic Acids Res       Date:  2014-05-29       Impact factor: 16.971

10.  From prelife to life: how chemical kinetics become evolutionary dynamics.

Authors:  Irene A Chen; Martin A Nowak
Journal:  Acc Chem Res       Date:  2012-02-15       Impact factor: 22.384

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