Literature DB >> 23599122

Accurate structure, thermodynamic and spectroscopic parameters from CC and CC/DFT schemes: the challenge of the conformational equilibrium in glycine.

Vincenzo Barone1, Malgorzata Biczysko, Julien Bloino, Cristina Puzzarini.   

Abstract

The structures, relative stabilities, and infrared spectra of the six low-energy conformers of glycine have been characterized using a state-of-the-art quantum-mechanical approach allowing the bond distances, conformational enthalpies and vibrational frequencies to be determined well within the chemical accuracy. Transition state structures governing interconversion among the different energy minima have also been characterized. In detail, the gas-phase thermodynamic properties (at 15 K and 410 K) of the glycine conformers considered have been obtained with a 1 kJ mol(-1) accuracy, and it has been shown that the employment of DFT geometries usually reduces such accuracy by at most 0.1 kJ mol(-1). Regarding molecular structures, the use of two different composite schemes allowed us to further confirm the suitability of a rather cost-effective approach and provide geometrical parameters with an overall accuracy better than 0.002 Å for distances and 1 degree for angles. Thanks to a hybrid CC/DFT approach, the infrared spectra of all conformers considered and of several deuterated isotopologues have been reproduced (when experimental data were available) or predicted with an accuracy of 10 cm(-1). Finally, the joint thermodynamic and spectroscopic investigation allowed us to shed some light on the possible observation of elusive conformers. On the whole, the high accuracy of the computational results allows us to draw a fully consistent interpretation of the available experimental data and to obtain a more complete characterization of the potential energy surface of glycine.

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Year:  2013        PMID: 23599122      PMCID: PMC4596005          DOI: 10.1039/c3cp50439e

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  35 in total

1.  A second-order perturbation theory route to vibrational averages and transition properties of molecules: general formulation and application to infrared and vibrational circular dichroism spectroscopies.

Authors:  Julien Bloino; Vincenzo Barone
Journal:  J Chem Phys       Date:  2012-03-28       Impact factor: 3.488

2.  Conformational transitions of glycine induced by vibrational excitation of the O-H stretch.

Authors:  Michaela Shmilovits-Ofir; Yifat Miller; R Benny Gerber
Journal:  Phys Chem Chem Phys       Date:  2010-10-05       Impact factor: 3.676

3.  The highly anharmonic BH5 potential energy surface characterized in the ab initio limit.

Authors:  Michael S Schuurman; Wesley D Allen; Paul von Ragué Schleyer; Henry F Schaefer
Journal:  J Chem Phys       Date:  2005-03-08       Impact factor: 3.488

4.  Calculations of vibrational energy levels by using a hybrid ab initio and DFT quartic force field: application to acetonitrile.

Authors:  D Begue; P Carbonniere; C Pouchan
Journal:  J Phys Chem A       Date:  2005-05-26       Impact factor: 2.781

5.  Basis set limit CCSD(T) harmonic vibrational frequencies.

Authors:  David P Tew; Wim Klopper; Miriam Heckert; Jürgen Gauss
Journal:  J Phys Chem A       Date:  2007-05-19       Impact factor: 2.781

6.  Practical methods for including torsional anharmonicity in thermochemical calculations on complex molecules: the internal-coordinate multi-structural approximation.

Authors:  Jingjing Zheng; Tao Yu; Ewa Papajak; I M Alecu; Steven L Mielke; Donald G Truhlar
Journal:  Phys Chem Chem Phys       Date:  2011-05-11       Impact factor: 3.676

7.  Experimental thermodynamics of free glycine conformations: the first Raman experiment after twenty years of calculations.

Authors:  Roman M Balabin
Journal:  Phys Chem Chem Phys       Date:  2011-08-15       Impact factor: 3.676

8.  Mixed 14/16 helices in the gas phase: conformation-specific spectroscopy of Z-(Gly)n, n = 1, 3, 5.

Authors:  Jacob C Dean; Evan G Buchanan; Timothy S Zwier
Journal:  J Am Chem Soc       Date:  2012-10-05       Impact factor: 15.419

9.  Glycine conformers: a never-ending story?

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Cristina Puzzarini
Journal:  Phys Chem Chem Phys       Date:  2013-02-07       Impact factor: 3.676

10.  Accurate Anharmonic Vibrational Frequencies for Uracil: The Performance of Composite Schemes and Hybrid CC/DFT Model.

Authors:  Cristina Puzzarini; Malgorzata Biczysko; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2011-10-19       Impact factor: 6.006

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  16 in total

1.  CC/DFT Route toward Accurate Structures and Spectroscopic Features for Observed and Elusive Conformers of Flexible Molecules: Pyruvic Acid as a Case Study.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Paola Cimino; Emanuele Penocchio; Cristina Puzzarini
Journal:  J Chem Theory Comput       Date:  2015-08-07       Impact factor: 6.006

2.  The Virtual Multifrequency Spectrometer: a new paradigm for spectroscopy.

Authors:  Vincenzo Barone
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2016 Mar/Apr

3.  Structural features of the carbon-sulfur chemical bond: a semi-experimental perspective.

Authors:  Emanuele Penocchio; Marco Mendolicchio; Nicola Tasinato; Vincenzo Barone
Journal:  Can J Chem       Date:  2016-07-28       Impact factor: 1.118

4.  Reliable vibrational wavenumbers for C=O and N-H stretchings of isolated and hydrogen-bonded nucleic acid bases.

Authors:  Teresa Fornaro; Malgorzata Biczysko; Julien Bloino; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2016-03-28       Impact factor: 3.676

5.  Anharmonic Effects on Vibrational Spectra Intensities: Infrared, Raman, Vibrational Circular Dichroism, and Raman Optical Activity.

Authors:  Julien Bloino; Malgorzata Biczysko; Vincenzo Barone
Journal:  J Phys Chem A       Date:  2015-12-01       Impact factor: 2.781

6.  Fully anharmonic IR and Raman spectra of medium-size molecular systems: accuracy and interpretation.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino
Journal:  Phys Chem Chem Phys       Date:  2014-02-07       Impact factor: 3.676

7.  Dispersion corrected DFT approaches for anharmonic vibrational frequency calculations: nucleobases and their dimers.

Authors:  Teresa Fornaro; Malgorzata Biczysko; Susanna Monti; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2014-02-17       Impact factor: 3.676

8.  An integrated experimental and quantum-chemical investigation on the vibrational spectra of chlorofluoromethane.

Authors:  Andrea Pietropolli Charmet; Paolo Stoppa; Nicola Tasinato; Santi Giorgianni; Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Chiara Cappelli; Ivan Carnimeo; Cristina Puzzarini
Journal:  J Chem Phys       Date:  2013-10-28       Impact factor: 3.488

9.  State-of-the-Art Thermochemical and Kinetic Computations for Astrochemical Complex Organic Molecules: Formamide Formation in Cold Interstellar Clouds as a Case Study.

Authors:  Fanny Vazart; Danilo Calderini; Cristina Puzzarini; Dimitrios Skouteris; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2016-10-14       Impact factor: 6.006

10.  Accurate molecular structures and infrared spectra of trans-2,3-dideuterooxirane, methyloxirane, and trans-2,3-dimethyloxirane.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Cristina Puzzarini
Journal:  J Chem Phys       Date:  2014-07-21       Impact factor: 3.488

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