Literature DB >> 26575928

CC/DFT Route toward Accurate Structures and Spectroscopic Features for Observed and Elusive Conformers of Flexible Molecules: Pyruvic Acid as a Case Study.

Vincenzo Barone1, Malgorzata Biczysko2, Julien Bloino2, Paola Cimino3, Emanuele Penocchio1, Cristina Puzzarini4.   

Abstract

The structures and relative stabilities as well as the rotational and vibrational spectra of the three low-energy conformers of pyruvic acid (PA) have been characterized using a state-of-the-art quantum-mechanical approach designed for flexible molecules. By making use of the available experimental rotational constants for several isotopologues of the most stable PA conformer, Tc-PA, the semiexperimental equilibrium structure has been derived. The latter provides a reference for the pure theoretical determination of the equilibrium geometries for all conformers, thus confirming for these structures an accuracy of 0.001 Å and 0.1 deg for bond lengths and angles, respectively. Highly accurate relative energies of all conformers (Tc-, Tt-, and Ct-PA) and of the transition states connecting them are provided along with the thermodynamic properties at low and high temperatures, thus leading to conformational enthalpies accurate to 1 kJ mol(-1). Concerning microwave spectroscopy, rotational constants accurate to about 20 MHz are provided for the Tt- and Ct-PA conformers, together with the computed centrifugal-distortion constants and dipole moments required to simulate their rotational spectra. For Ct-PA, vibrational frequencies in the mid-infrared region accurate to 10 cm(-1) are reported along with theoretical estimates for the transitions in the near-infrared range, and the corresponding infrared spectrum including fundamental transitions, overtones, and combination bands has been simulated. In addition to the new data described above, theoretical results for the Tc- and Tt-PA conformers are compared with all available experimental data to further confirm the accuracy of the hybrid coupled-cluster/density functional theory (CC/DFT) protocol applied in the present study. Finally, we discuss in detail the accuracy of computational models fully based on double-hybrid DFT functionals (mainly at the B2PLYP/aug-cc-pVTZ level) that avoid the use of very expensive CC calculations.

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Year:  2015        PMID: 26575928      PMCID: PMC5905675          DOI: 10.1021/acs.jctc.5b00580

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  89 in total

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Journal:  J Phys Chem A       Date:  2010-07-01       Impact factor: 2.781

2.  Vibrational zero-point energies and thermodynamic functions beyond the harmonic approximation.

Authors:  Vincenzo Barone
Journal:  J Chem Phys       Date:  2004-02-15       Impact factor: 3.488

3.  Calculations of vibrational energy levels by using a hybrid ab initio and DFT quartic force field: application to acetonitrile.

Authors:  D Begue; P Carbonniere; C Pouchan
Journal:  J Phys Chem A       Date:  2005-05-26       Impact factor: 2.781

4.  Vibrational structure theory: new vibrational wave function methods for calculation of anharmonic vibrational energies and vibrational contributions to molecular properties.

Authors:  Ove Christiansen
Journal:  Phys Chem Chem Phys       Date:  2007-03-23       Impact factor: 3.676

5.  Extrapolation to the complete basis set limit of structural parameters: comparison of different approaches.

Authors:  Cristina Puzzarini
Journal:  J Phys Chem A       Date:  2009-12-31       Impact factor: 2.781

6.  Exploring the conformational space of cysteine by matrix isolation spectroscopy combined with near-infrared laser induced conformational change.

Authors:  Eszter E Najbauer; Gábor Bazsó; Sándor Góbi; Gábor Magyarfalvi; György Tarczay
Journal:  J Phys Chem B       Date:  2014-02-11       Impact factor: 2.991

Review 7.  Biotechnological production of pyruvic acid.

Authors:  Y Li; J Chen; S Y Lun
Journal:  Appl Microbiol Biotechnol       Date:  2001-11       Impact factor: 4.813

8.  Seven Conformers of Neutral Dopamine Revealed in the Gas Phase.

Authors:  Carlos Cabezas; Isabel Peña; Juan C López; José L Alonso
Journal:  J Phys Chem Lett       Date:  2013-01-23       Impact factor: 6.475

9.  Spin-component-scaled double hybrids: An extensive search for the best fifth-rung functionals blending DFT and perturbation theory.

Authors:  Sebastian Kozuch; Jan M L Martin
Journal:  J Comput Chem       Date:  2013-08-26       Impact factor: 3.376

10.  Laser probes of conformational isomerization in flexible molecules and complexes.

Authors:  Timothy S Zwier
Journal:  J Phys Chem A       Date:  2006-03-30       Impact factor: 2.781

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  12 in total

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3.  The Virtual Multifrequency Spectrometer: a new paradigm for spectroscopy.

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4.  Structural features of the carbon-sulfur chemical bond: a semi-experimental perspective.

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Journal:  Can J Chem       Date:  2016-07-28       Impact factor: 1.118

5.  Reliable vibrational wavenumbers for C=O and N-H stretchings of isolated and hydrogen-bonded nucleic acid bases.

Authors:  Teresa Fornaro; Malgorzata Biczysko; Julien Bloino; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2016-03-28       Impact factor: 3.676

6.  Anharmonic Effects on Vibrational Spectra Intensities: Infrared, Raman, Vibrational Circular Dichroism, and Raman Optical Activity.

Authors:  Julien Bloino; Malgorzata Biczysko; Vincenzo Barone
Journal:  J Phys Chem A       Date:  2015-12-01       Impact factor: 2.781

7.  State-of-the-Art Thermochemical and Kinetic Computations for Astrochemical Complex Organic Molecules: Formamide Formation in Cold Interstellar Clouds as a Case Study.

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Journal:  J Chem Theory Comput       Date:  2016-10-14       Impact factor: 6.006

8.  Predicting the structure and vibrational frequencies of ethylene using harmonic and anharmonic approaches at the Kohn-Sham complete basis set limit.

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Journal:  J Mol Model       Date:  2016-01-22       Impact factor: 1.810

9.  Correct Modeling of Cisplatin: a Paradigmatic Case.

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10.  CPL Spectra of Camphor Derivatives in Solution by an Integrated QM/MD Approach.

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