Literature DB >> 24244064

Simulations of Two-dimensional Infrared and Stimulated Resonance Raman Spectra of Photoactive Yellow Protein.

Nicholas K Preketes, Jason D Biggs, Hao Ren, Ioan Andricioaei, Shaul Mukamel.   

Abstract

We present simulations of one and two-dimensional infrared (2DIR) and stimulated resonance Raman (SRR) spectra of the dark state (pG) and early red-shifted intermediate (pR) of photoactive yellow protein (PYP). Shifts in the amide I and Glu46 COOH stretching bands distinguish between pG and pR in the IR absorption and 2DIR spectra. The one-dimensional SRR spectra are similar to the spontaneous RR spectra. The two-dimensional SRR spectra show large changes in cross peaks involving the C=O stretch of the two species and are more sensitive to the chromophore structure than 2DIR spectra.

Entities:  

Year:  2013        PMID： 24244064      PMCID： PMC3827784          DOI： 10.1016/j.chemphys.2012.09.002

Source DB:  PubMed          Journal:  Chem Phys        ISSN： 0301-0104            Impact factor:   2.348


  37 in total

1.  Generalized Gradient Approximation Made Simple.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

2.  Simulation protocols for coherent femtosecond vibrational spectra of peptides.

Authors:  Wei Zhuang; Darius Abramavicius; Tomoyuki Hayashi; Shaul Mukamel
Journal:  J Phys Chem B       Date:  2006-02-23       Impact factor: 2.991

Review 3.  Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle versus supermolecule perspectives.

Authors:  Darius Abramavicius; Benoit Palmieri; Dmitri V Voronine; Frantisek Sanda; Shaul Mukamel
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

4.  Structural evolution of the chromophore in the primary stages of trans/cis isomerization in photoactive yellow protein.

Authors:  Karsten Heyne; Omar F Mohammed; Anwar Usman; Jens Dreyer; Erik T J Nibbering; Michael A Cusanovich
Journal:  J Am Chem Soc       Date:  2005-12-28       Impact factor: 15.419

5.  Global conformational changes upon receptor stimulation in photoactive yellow protein.

Authors:  W D Hoff; A Xie; I H Van Stokkum; X J Tang; J Gural; A R Kroon; K J Hellingwerf
Journal:  Biochemistry       Date:  1999-01-19       Impact factor: 3.162

6.  Photoreaction cycle of photoactive yellow protein from Ectothiorhodospira halophila studied by low-temperature spectroscopy.

Authors:  Y Imamoto; M Kataoka; F Tokunaga
Journal:  Biochemistry       Date:  1996-11-12       Impact factor: 3.162

7.  Measurement and global analysis of the absorbance changes in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila.

Authors:  W D Hoff; I H van Stokkum; H J van Ramesdonk; M E van Brederode; A M Brouwer; J C Fitch; T E Meyer; R van Grondelle; K J Hellingwerf
Journal:  Biophys J       Date:  1994-10       Impact factor: 4.033

8.  Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein.

Authors:  A Xie; W D Hoff; A R Kroon; K J Hellingwerf
Journal:  Biochemistry       Date:  1996-11-26       Impact factor: 3.162

9.  Short hydrogen bonds in photoactive yellow protein.

Authors:  Spencer Anderson; Sean Crosson; Keith Moffat
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-05-21

10.  Time-resolved resonance raman structural studies of the pB' intermediate in the photocycle of photoactive yellow protein.

Authors:  Duohai Pan; Andrew Philip; Wouter D Hoff; Richard A Mathies
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033
View more
  1 in total

1.  Transient two-dimensional vibrational spectroscopy of an operating molecular machine.

Authors:  Matthijs R Panman; Chris N van Dijk; Adriana Huerta-Viga; Hans J Sanders; Bert H Bakker; David A Leigh; Albert M Brouwer; Wybren Jan Buma; Sander Woutersen
Journal:  Nat Commun       Date:  2017-12-20       Impact factor: 14.919
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.