Literature DB >> 23580621

Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network.

Feng Liu1, Alexander H Morrison, Thomas Gregor.   

Abstract

Patterning of body parts in multicellular organisms relies on the interpretation of transcription factor (TF) concentrations by genetic networks. To determine the extent by which absolute TF concentration dictates gene expression and morphogenesis programs that ultimately lead to patterns in Drosophila embryos, we manipulate maternally supplied patterning determinants and measure readout concentration at the position of various developmental markers. When we increase the overall amount of the maternal TF Bicoid (Bcd) fivefold, Bcd concentrations in cells at positions of the cephalic furrow, an early morphological marker, differ by a factor of 2. This finding apparently contradicts the traditional threshold-dependent readout model, which predicts that the Bcd concentrations at these positions should be identical. In contrast, Bcd concentration at target gene expression boundaries is nearly unchanged early in development but adjusts dynamically toward the same twofold change as development progresses. Thus, the Drosophila segmentation gene network responds faithfully to Bcd concentration during early development, in agreement with the threshold model, but subsequently partially adapts in response to altered Bcd dosage, driving segmentation patterns toward their WT positions. This dynamic response requires other maternal regulators, such as Torso and Nanos, suggesting that integration of maternal input information is not achieved through molecular interactions at the time of readout but through the subsequent collective interplay of the network.

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Year:  2013        PMID: 23580621      PMCID: PMC3637740          DOI: 10.1073/pnas.1220912110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

2.  Known maternal gradients are not sufficient for the establishment of gap domains in Drosophila melanogaster.

Authors:  Johannes Jaeger; David H Sharp; John Reinitz
Journal:  Mech Dev       Date:  2006-11-14       Impact factor: 1.882

3.  Antagonistic action of Bicoid and the repressor Capicua determines the spatial limits of Drosophila head gene expression domains.

Authors:  Ulrike Löhr; Ho-Ryun Chung; Mathias Beller; Herbert Jäckle
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-03       Impact factor: 11.205

4.  Phosphorylation of bicoid on MAP-kinase sites: contribution to its interaction with the torso pathway.

Authors:  F Janody; R Sturny; F Catala; C Desplan; N Dostatni
Journal:  Development       Date:  2000-01       Impact factor: 6.868

5.  The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA.

Authors:  Shawn C Little; Gašper Tkačik; Thomas B Kneeland; Eric F Wieschaus; Thomas Gregor
Journal:  PLoS Biol       Date:  2011-03-01       Impact factor: 8.029

6.  The Drosophila gap gene network is composed of two parallel toggle switches.

Authors:  Dmitri Papatsenko; Michael Levine
Journal:  PLoS One       Date:  2011-07-01       Impact factor: 3.240

Review 7.  The gap gene network.

Authors:  Johannes Jaeger
Journal:  Cell Mol Life Sci       Date:  2010-10-08       Impact factor: 9.261

8.  Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes.

Authors:  Michele Markstein; Chrysoula Pitsouli; Christians Villalta; Susan E Celniker; Norbert Perrimon
Journal:  Nat Genet       Date:  2008-03-02       Impact factor: 38.330

9.  Targeting gene expression to the head: the Drosophila orthodenticle gene is a direct target of the Bicoid morphogen.

Authors:  Q Gao; R Finkelstein
Journal:  Development       Date:  1998-11       Impact factor: 6.868

10.  Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors.

Authors:  Svetlana Surkova; Alexander V Spirov; Vitaly V Gursky; Hilde Janssens; Ah-Ram Kim; Ovidiu Radulescu; Carlos E Vanario-Alonso; David H Sharp; Maria Samsonova; John Reinitz
Journal:  PLoS Comput Biol       Date:  2009-03-13       Impact factor: 4.475

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  41 in total

1.  Positional information, in bits.

Authors:  Julien O Dubuis; Gasper Tkacik; Eric F Wieschaus; Thomas Gregor; William Bialek
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-02       Impact factor: 11.205

2.  Maternal origins of developmental reproducibility.

Authors:  Mariela D Petkova; Shawn C Little; Feng Liu; Thomas Gregor
Journal:  Curr Biol       Date:  2014-05-22       Impact factor: 10.834

3.  Positional information, positional error, and readout precision in morphogenesis: a mathematical framework.

Authors:  Gašper Tkačik; Julien O Dubuis; Mariela D Petkova; Thomas Gregor
Journal:  Genetics       Date:  2014-10-31       Impact factor: 4.562

Review 4.  Pervasive robustness in biological systems.

Authors:  Marie-Anne Félix; Michalis Barkoulas
Journal:  Nat Rev Genet       Date:  2015-08       Impact factor: 53.242

5.  Fly wing vein patterns have spatial reproducibility of a single cell.

Authors:  Laurent Abouchar; Mariela D Petkova; Cynthia R Steinhardt; Thomas Gregor
Journal:  J R Soc Interface       Date:  2014-08-06       Impact factor: 4.118

6.  Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos.

Authors:  Jacques P Bothma; Hernan G Garcia; Emilia Esposito; Gavin Schlissel; Thomas Gregor; Michael Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-03       Impact factor: 11.205

7.  Inference of Transcription Factor Regulation Patterns Using Gene Expression Covariation in Natural Populations of Drosophila melanogaster.

Authors:  Noha M Osman; Tevfik Hamdi Kitapci; Srna Vlaho; Zeba Wunderlich; Sergey V Nuzhdin
Journal:  Biophysics (Oxf)       Date:  2018-04-23

8.  Quantitative dissection of transcription in development yields evidence for transcription-factor-driven chromatin accessibility.

Authors:  Elizabeth Eck; Jonathan Liu; Maryam Kazemzadeh-Atoufi; Sydney Ghoreishi; Shelby A Blythe; Hernan G Garcia
Journal:  Elife       Date:  2020-10-19       Impact factor: 8.140

9.  Live Imaging of mRNA Synthesis in Drosophila.

Authors:  Hernan G Garcia; Thomas Gregor
Journal:  Methods Mol Biol       Date:  2018

Review 10.  Using synthetic biology to make cells tomorrow's test tubes.

Authors:  Hernan G Garcia; Robert C Brewster; Rob Phillips
Journal:  Integr Biol (Camb)       Date:  2016-03-08       Impact factor: 2.192

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