Literature DB >> 9753673

Targeting gene expression to the head: the Drosophila orthodenticle gene is a direct target of the Bicoid morphogen.

Q Gao1, R Finkelstein.   

Abstract

The Bicoid (Bcd) morphogen establishes the head and thorax of the Drosophila embryo. Bcd activates the transcription of identified target genes in the thoracic segments, but its mechanism of action in the head remains poorly understood. It has been proposed that Bcd directly activates the cephalic gap genes, which are the first zygotic genes to be expressed in the head primordium. It has also been suggested that the affinity of Bcd-binding sites in the promoters of Bcd target genes determines the posterior extent of their expression (the Gene X model). However, both these hypotheses remain untested. Here, we show that a small regulatory region upstream of the cephalic gap gene orthodenticle (otd) is sufficient to recapitulate early otd expression in the head primordium. This region contains two control elements, each capable of driving otd-like expression. The first element has consensus Bcd target sites that bind Bcd in vitro and are necessary for head-specific expression. As predicted by the Gene X model, this element has a relatively low affinity for Bcd. Surprisingly, the second regulatory element has no Bcd sites. Instead, it contains a repeated sequence motif similar to a regulatory element found in the promoters of otd-related genes in vertebrates. Our study is the first demonstration that a cephalic gap gene is directly regulated by Bcd. However, it also shows that zygotic gene expression can be targeted to the head primordium without direct Bcd regulation.

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Year:  1998        PMID: 9753673     DOI: 10.1242/dev.125.21.4185

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  33 in total

1.  Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.

Authors:  Benjamin P Berman; Yutaka Nibu; Barret D Pfeiffer; Pavel Tomancak; Susan E Celniker; Michael Levine; Gerald M Rubin; Michael B Eisen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

2.  Homotypic regulatory clusters in Drosophila.

Authors:  Alexander P Lifanov; Vsevolod J Makeev; Anna G Nazina; Dmitri A Papatsenko
Journal:  Genome Res       Date:  2003-04       Impact factor: 9.043

3.  The RNA binding domain of Jerky consists of tandemly arranged helix-turn-helix/homeodomain-like motifs and binds specific sets of mRNAs.

Authors:  Wencheng Liu; Jeremy Seto; Etienne Sibille; Miklos Toth
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

4.  Shaping a morphogen gradient for positional precision.

Authors:  Feng He; Timothy E Saunders; Ying Wen; David Cheung; Renjie Jiao; Pieter Rein ten Wolde; Martin Howard; Jun Ma
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

5.  Nucleosome-mediated cooperativity between transcription factors.

Authors:  Leonid A Mirny
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

6.  Evaluating the Drosophila Bicoid morphogen gradient system through dissecting the noise in transcriptional bursts.

Authors:  Feng He; Jie Ren; Wei Wang; Jun Ma
Journal:  Bioinformatics       Date:  2012-02-02       Impact factor: 6.937

7.  The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila.

Authors:  Amanda Ochoa-Espinosa; Gozde Yucel; Leah Kaplan; Adam Pare; Noel Pura; Adam Oberstein; Dmitri Papatsenko; Stephen Small
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-25       Impact factor: 11.205

8.  Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.

Authors:  Julia Zeitlinger; Robert P Zinzen; Alexander Stark; Manolis Kellis; Hailan Zhang; Richard A Young; Michael Levine
Journal:  Genes Dev       Date:  2007-02-15       Impact factor: 11.361

9.  Probing the limits to positional information.

Authors:  Thomas Gregor; David W Tank; Eric F Wieschaus; William Bialek
Journal:  Cell       Date:  2007-07-13       Impact factor: 41.582

10.  Antagonistic action of Bicoid and the repressor Capicua determines the spatial limits of Drosophila head gene expression domains.

Authors:  Ulrike Löhr; Ho-Ryun Chung; Mathias Beller; Herbert Jäckle
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-03       Impact factor: 11.205

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