Literature DB >> 23579206

An electro-hydrodynamics-based model for the ionic conductivity of solid-state nanopores during DNA translocation.

Binquan Luan1, Gustavo Stolovitzky.   

Abstract

A solid-state nanopore can be used to sense DNA (or other macromolecules) by monitoring ion-current changes that result from translocation of the molecule through the pore. When transiting a nanopore, the highly negatively charged DNA interacts with a nanopore both electrically and hydrodynamically, causing a current blockage or a current enhancement at different ion concentrations. This effect was previously characterized using a phenomenological model that can be n class="Chemical">considered as the limit of the electro-hydrodynamics model presented here. We show theoretically that the effect of surface charge of a nanopore (or electro-osmotic effect) can be equivalently treated as modifications of electrophoretic mobilities of ions in the pore, providing an improved physical understanding of the current blockage (or enhancement).

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Year:  2013        PMID: 23579206      PMCID: PMC3681960          DOI: 10.1088/0957-4484/24/19/195702

Source DB:  PubMed          Journal:  Nanotechnology        ISSN: 0957-4484            Impact factor:   3.874


  41 in total

1.  Driven polymer translocation through a narrow pore.

Authors:  D K Lubensky; D R Nelson
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Wild type, mutant protein unfolding and phase transition detected by single-nanopore recording.

Authors:  Céline Merstorf; Benjamin Cressiot; Manuela Pastoriza-Gallego; Abdelghani Oukhaled; Jean-Michel Betton; Loïc Auvray; Juan Pelta
Journal:  ACS Chem Biol       Date:  2012-02-02       Impact factor: 5.100

3.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

Authors:  Meni Wanunu; Tali Dadosh; Vishva Ray; Jingmin Jin; Larry McReynolds; Marija Drndić
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

4.  Slowing DNA translocation in a solid-state nanopore.

Authors:  Daniel Fologea; James Uplinger; Brian Thomas; David S McNabb; Jiali Li
Journal:  Nano Lett       Date:  2005-09       Impact factor: 11.189

5.  Single-molecule analysis of DNA-protein complexes using nanopores.

Authors:  Breton Hornblower; Amy Coombs; Richard D Whitaker; Anatoly Kolomeisky; Stephen J Picone; Amit Meller; Mark Akeson
Journal:  Nat Methods       Date:  2007-03-04       Impact factor: 28.547

6.  Effect of salt concentration on the electrophoretic speed of a polyelectrolyte through a nanopore.

Authors:  Sandip Ghosal
Journal:  Phys Rev Lett       Date:  2007-06-07       Impact factor: 9.161

7.  Electrokinetic-flow-induced viscous drag on a tethered DNA inside a nanopore.

Authors:  Sandip Ghosal
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-12-26

8.  DNA translocation governed by interactions with solid-state nanopores.

Authors:  Meni Wanunu; Jason Sutin; Ben McNally; Andrew Chow; Amit Meller
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

9.  Electrophoretic force on a protein-coated DNA molecule in a solid-state nanopore.

Authors:  Adam R Hall; Stijn van Dorp; Serge G Lemay; Cees Dekker
Journal:  Nano Lett       Date:  2009-12       Impact factor: 11.189

Review 10.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

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  4 in total

1.  Surface charge, electroosmotic flow and DNA extension in chemically modified thermoplastic nanoslits and nanochannels.

Authors:  Franklin I Uba; Swathi R Pullagurla; Nichanun Sirasunthorn; Jiahao Wu; Sunggook Park; Rattikan Chantiwas; Yoon-Kyoung Cho; Heungjoo Shin; Steven A Soper
Journal:  Analyst       Date:  2015-01-07       Impact factor: 4.616

Review 2.  Flow of DNA in micro/nanofluidics: From fundamentals to applications.

Authors:  Lea Rems; Durgesh Kawale; L James Lee; Pouyan E Boukany
Journal:  Biomicrofluidics       Date:  2016-07-20       Impact factor: 2.800

3.  Measurements of the size and correlations between ions using an electrolytic point contact.

Authors:  Eveline Rigo; Zhuxin Dong; Jae Hyun Park; Eamonn Kennedy; Mohammad Hokmabadi; Lisa Almonte-Garcia; Li Ding; Narayana Aluru; Gregory Timp
Journal:  Nat Commun       Date:  2019-05-30       Impact factor: 14.919

4.  Electrically facilitated translocation of protein through solid nanopore.

Authors:  Lingzhi Wu; Hang Liu; Wenyuan Zhao; Lei Wang; Chuanrong Hou; Quanjun Liu; Zuhong Lu
Journal:  Nanoscale Res Lett       Date:  2014-03-24       Impact factor: 4.703

  4 in total

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