Literature DB >> 23576760

Nuclear resonance vibrational spectroscopic and computational study of high-valent diiron complexes relevant to enzyme intermediates.

Kiyoung Park1, Caleb B Bell, Lei V Liu, Dong Wang, Genqiang Xue, Yeonju Kwak, Shaun D Wong, Kenneth M Light, Jiyong Zhao, E Ercan Alp, Yoshitaka Yoda, Makina Saito, Yasuhiro Kobayashi, Takehiro Ohta, Makoto Seto, Lawrence Que, Edward I Solomon.   

Abstract

High-valent intermediates of binuclear nonheme iron enzymes are structurally unknown despite their importance for understanding enzyme reactivity. Nuclear resonance vibrational spectroscopy combined with density functional theory calculations has been applied to structurally well-characterized high-valent mono- and di-oxo bridged binuclear Fe model complexes. Low-frequency vibrational modes of these high-valent diiron complexes involving Fe motion have been observed and assigned. These are independent of Fe oxidation state and show a strong dependence on spin state. It is important to note that they are sensitive to the nature of the Fe2 core bridges and provide the basis for interpreting parallel nuclear resonance vibrational spectroscopy data on the high-valent oxo intermediates in the binuclear nonheme iron enzymes.

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Year:  2013        PMID: 23576760      PMCID: PMC3631696          DOI: 10.1073/pnas.1304238110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Kinetics and activation thermodynamics of methane monooxygenase compound Q formation and reaction with substrates.

Authors:  B J Brazeau; J D Lipscomb
Journal:  Biochemistry       Date:  2000-11-07       Impact factor: 3.162

Review 2.  Nuclear resonance vibrational spectroscopy--NRVS.

Authors:  W Robert Scheidt; Stephen M Durbin; J Timothy Sage
Journal:  J Inorg Biochem       Date:  2005-01       Impact factor: 4.155

3.  Oxidation reactions performed by soluble methane monooxygenase hydroxylase intermediates H(peroxo) and Q proceed by distinct mechanisms.

Authors:  Christine E Tinberg; Stephen J Lippard
Journal:  Biochemistry       Date:  2010-09-14       Impact factor: 3.162

4.  Nuclear resonance vibrational spectroscopy on the Fe(IV)=O S=2 non-heme site in TMG3tren: experimentally calibrated insights into reactivity.

Authors:  Shaun D Wong; Caleb B Bell; Lei V Liu; Yeonju Kwak; Jason England; E Ercan Alp; Jiyong Zhao; Lawrence Que; Edward I Solomon
Journal:  Angew Chem Int Ed Engl       Date:  2011-03-02       Impact factor: 15.336

5.  Crystal structures of the soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath) demonstrating geometrical variability at the dinuclear iron active site.

Authors:  D A Whittington; S J Lippard
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

6.  Theoretical Model Studies of the Iron Dimer Complex of MMO and RNR.

Authors:  Per E. M. Siegbahn
Journal:  Inorg Chem       Date:  1999-06-14       Impact factor: 5.165

Review 7.  Dioxygen activation in soluble methane monooxygenase.

Authors:  Christine E Tinberg; Stephen J Lippard
Journal:  Acc Chem Res       Date:  2011-03-10       Impact factor: 22.384

8.  A diiron(IV) complex that cleaves strong C-H and O-H bonds.

Authors:  Dong Wang; Erik R Farquhar; Audria Stubna; Eckard Münck; Lawrence Que
Journal:  Nat Chem       Date:  2009-05       Impact factor: 24.427

9.  DFT calculations of comparative energetics and ENDOR/Mössbauer properties for two protonation states of the iron dimer cluster of ribonucleotide reductase intermediate X.

Authors:  Wen-Ge Han; Louis Noodleman
Journal:  Dalton Trans       Date:  2009-06-23       Impact factor: 4.390

10.  Spectroscopic and electronic structure studies of intermediate X in ribonucleotide reductase R2 and two variants: a description of the FeIV-oxo bond in the FeIII-O-FeIV dimer.

Authors:  Natasa Mitić; Michael D Clay; Lana Saleh; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-06-29       Impact factor: 15.419

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  7 in total

Review 1.  Mono- and binuclear non-heme iron chemistry from a theoretical perspective.

Authors:  Tibor András Rokob; Jakub Chalupský; Daniel Bím; Prokopis C Andrikopoulos; Martin Srnec; Lubomír Rulíšek
Journal:  J Biol Inorg Chem       Date:  2016-05-26       Impact factor: 3.358

Review 2.  Structure/function correlations over binuclear non-heme iron active sites.

Authors:  Edward I Solomon; Kiyoung Park
Journal:  J Biol Inorg Chem       Date:  2016-07-01       Impact factor: 3.358

3.  Geometric and electronic structure of the Mn(IV)Fe(III) cofactor in class Ic ribonucleotide reductase: correlation to the class Ia binuclear non-heme iron enzyme.

Authors:  Yeonju Kwak; Wei Jiang; Laura M K Dassama; Kiyoung Park; Caleb B Bell; Lei V Liu; Shaun D Wong; Makina Saito; Yasuhiro Kobayashi; Shinji Kitao; Makoto Seto; Yoshitaka Yoda; E Ercan Alp; Jiyong Zhao; J Martin Bollinger; Carsten Krebs; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2013-11-06       Impact factor: 15.419

4.  Nuclear Resonance Vibrational Spectroscopic Definition of the Fe(IV)2 Intermediate Q in Methane Monooxygenase and Its Reactivity.

Authors:  Ariel Benjamin Jacobs; Rahul Banerjee; Dory Ellen Deweese; Augustin Braun; Jeffrey Thomas Babicz; Leland Bruce Gee; Kyle David Sutherlin; Lars Hendrik Böttger; Yoshitaka Yoda; Makina Saito; Shinji Kitao; Yasuhiro Kobayashi; Makoto Seto; Kenji Tamasaku; John D Lipscomb; Kiyoung Park; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2021-09-27       Impact factor: 15.419

5.  Force field independent metal parameters using a nonbonded dummy model.

Authors:  Fernanda Duarte; Paul Bauer; Alexandre Barrozo; Beat Anton Amrein; Miha Purg; Johan Aqvist; Shina Caroline Lynn Kamerlin
Journal:  J Phys Chem B       Date:  2014-04-15       Impact factor: 2.991

6.  Hydride bridge in [NiFe]-hydrogenase observed by nuclear resonance vibrational spectroscopy.

Authors:  Hideaki Ogata; Tobias Krämer; Hongxin Wang; David Schilter; Vladimir Pelmenschikov; Maurice van Gastel; Frank Neese; Thomas B Rauchfuss; Leland B Gee; Aubrey D Scott; Yoshitaka Yoda; Yoshihito Tanaka; Wolfgang Lubitz; Stephen P Cramer
Journal:  Nat Commun       Date:  2015-08-10       Impact factor: 14.919

7.  Elucidation of the Fe(IV)=O intermediate in the catalytic cycle of the halogenase SyrB2.

Authors:  Shaun D Wong; Martin Srnec; Megan L Matthews; Lei V Liu; Yeonju Kwak; Kiyoung Park; Caleb B Bell; E Ercan Alp; Jiyong Zhao; Yoshitaka Yoda; Shinji Kitao; Makoto Seto; Carsten Krebs; J Martin Bollinger; Edward I Solomon
Journal:  Nature       Date:  2013-07-18       Impact factor: 49.962

  7 in total

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