Literature DB >> 23566378

Building robust functionality in synthetic circuits using engineered feedback regulation.

Susan Chen1, Patrick Harrigan, Benjamin Heineike, Jacob Stewart-Ornstein, Hana El-Samad.   

Abstract

The ability to engineer novel functionality within cells, to quantitatively control cellular circuits, and to manipulate the behaviors of populations, has many important applications in biotechnology and biomedicine. These applications are only beginning to be explored. In this review, we advocate the use of feedback control as an essential strategy for the engineering of robust homeostatic control of biological circuits and cellular populations. We also describe recent works where feedback control, implemented in silico or with biological components, was successfully employed for this purpose.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23566378      PMCID: PMC3732497          DOI: 10.1016/j.copbio.2013.02.025

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  51 in total

1.  A light-switchable gene promoter system.

Authors:  Sae Shimizu-Sato; Enamul Huq; James M Tepperman; Peter H Quail
Journal:  Nat Biotechnol       Date:  2002-09-03       Impact factor: 54.908

2.  Distributed biological computation with multicellular engineered networks.

Authors:  Sergi Regot; Javier Macia; Núria Conde; Kentaro Furukawa; Jimmy Kjellén; Tom Peeters; Stefan Hohmann; Eulàlia de Nadal; Francesc Posas; Ricard Solé
Journal:  Nature       Date:  2010-12-08       Impact factor: 49.962

3.  Engineering static and dynamic control of synthetic pathways.

Authors:  William J Holtz; Jay D Keasling
Journal:  Cell       Date:  2010-01-08       Impact factor: 41.582

4.  In silico feedback for in vivo regulation of a gene expression circuit.

Authors:  Andreas Milias-Argeitis; Sean Summers; Jacob Stewart-Ornstein; Ignacio Zuleta; David Pincus; Hana El-Samad; Mustafa Khammash; John Lygeros
Journal:  Nat Biotechnol       Date:  2011-11-06       Impact factor: 54.908

5.  A systems-level analysis of perfect adaptation in yeast osmoregulation.

Authors:  Dale Muzzey; Carlos A Gómez-Uribe; Jerome T Mettetal; Alexander van Oudenaarden
Journal:  Cell       Date:  2009-07-10       Impact factor: 41.582

Review 6.  Aromatic amino acid biosynthesis in the yeast Saccharomyces cerevisiae: a model system for the regulation of a eukaryotic biosynthetic pathway.

Authors:  G H Braus
Journal:  Microbiol Rev       Date:  1991-09

7.  TULIPs: tunable, light-controlled interacting protein tags for cell biology.

Authors:  Devin Strickland; Yuan Lin; Elizabeth Wagner; C Matthew Hope; Josiah Zayner; Chloe Antoniou; Tobin R Sosnick; Eric L Weiss; Michael Glotzer
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

8.  Light-based feedback for controlling intracellular signaling dynamics.

Authors:  Jared E Toettcher; Delquin Gong; Wendell A Lim; Orion D Weiner
Journal:  Nat Methods       Date:  2011-09-11       Impact factor: 28.547

9.  A synthetic Escherichia coli predator-prey ecosystem.

Authors:  Frederick K Balagaddé; Hao Song; Jun Ozaki; Cynthia H Collins; Matthew Barnet; Frances H Arnold; Stephen R Quake; Lingchong You
Journal:  Mol Syst Biol       Date:  2008-04-15       Impact factor: 11.429

10.  A fast, robust and tunable synthetic gene oscillator.

Authors:  Jesse Stricker; Scott Cookson; Matthew R Bennett; William H Mather; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2008-10-29       Impact factor: 49.962

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  5 in total

Review 1.  Bacterial protein networks: properties and functions.

Authors:  Athanasios Typas; Victor Sourjik
Journal:  Nat Rev Microbiol       Date:  2015-08-10       Impact factor: 60.633

2.  Pharmaceutical-based entrainment of circadian phase via nonlinear model predictive control.

Authors:  John H Abel; Ankush Chakrabarty; Elizabeth B Klerman; Francis J Doyle
Journal:  Automatica (Oxf)       Date:  2018-12-10       Impact factor: 5.944

3.  Secreting and sensing the same molecule allows cells to achieve versatile social behaviors.

Authors:  Hyun Youk; Wendell A Lim
Journal:  Science       Date:  2014-02-07       Impact factor: 47.728

Review 4.  Platforms for Optogenetic Stimulation and Feedback Control.

Authors:  Sant Kumar; Mustafa Khammash
Journal:  Front Bioeng Biotechnol       Date:  2022-06-08

5.  Automated optogenetic feedback control for precise and robust regulation of gene expression and cell growth.

Authors:  Andreas Milias-Argeitis; Marc Rullan; Stephanie K Aoki; Peter Buchmann; Mustafa Khammash
Journal:  Nat Commun       Date:  2016-08-26       Impact factor: 14.919

  5 in total

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