Literature DB >> 26256789

Bacterial protein networks: properties and functions.

Athanasios Typas1, Victor Sourjik2.   

Abstract

Distinct cellular functions are executed by separate groups of proteins, organized into complexes or functional modules, which are ultimately interconnected in cell-wide protein networks. Understanding the structures and operational modes of these networks is one of the next great challenges in biology, and microorganisms are at the forefront of research in this field. In this Review, we present our current understanding of bacterial protein networks, their general properties and the tools that are used for systematically mapping and characterizing them. We then discuss two well-studied examples, the chemotaxis network and the cell cycle network in Escherichia coli, to illustrate how network architecture promotes function.

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Year:  2015        PMID: 26256789     DOI: 10.1038/nrmicro3508

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  140 in total

1.  Receptor sensitivity in bacterial chemotaxis.

Authors:  Victor Sourjik; Howard C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

2.  Network motifs: simple building blocks of complex networks.

Authors:  R Milo; S Shen-Orr; S Itzkovitz; N Kashtan; D Chklovskii; U Alon
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

3.  Phenotypic landscape of a bacterial cell.

Authors:  Robert J Nichols; Saunak Sen; Yoe Jin Choo; Pedro Beltrao; Matylda Zietek; Rachna Chaba; Sueyoung Lee; Krystyna M Kazmierczak; Karis J Lee; Angela Wong; Michael Shales; Susan Lovett; Malcolm E Winkler; Nevan J Krogan; Athanasios Typas; Carol A Gross
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

4.  Design principles of a bacterial signalling network.

Authors:  Markus Kollmann; Linda Løvdok; Kilian Bartholomé; Jens Timmer; Victor Sourjik
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

5.  Biogenesis of a bacterial organelle: the carboxysome assembly pathway.

Authors:  Jeffrey C Cameron; Steven C Wilson; Susan L Bernstein; Cheryl A Kerfeld
Journal:  Cell       Date:  2013-11-21       Impact factor: 41.582

6.  Partial functional redundancy of MreB isoforms, MreB, Mbl and MreBH, in cell morphogenesis of Bacillus subtilis.

Authors:  Yoshikazu Kawai; Kei Asai; Jeffery Errington
Journal:  Mol Microbiol       Date:  2009-07-29       Impact factor: 3.501

7.  A novel genetic system to detect protein-protein interactions.

Authors:  S Fields; O Song
Journal:  Nature       Date:  1989-07-20       Impact factor: 49.962

Review 8.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

9.  Role of translational coupling in robustness of bacterial chemotaxis pathway.

Authors:  Linda Løvdok; Kajetan Bentele; Nikita Vladimirov; Anette Müller; Ferencz S Pop; Dirk Lebiedz; Markus Kollmann; Victor Sourjik
Journal:  PLoS Biol       Date:  2009-08-18       Impact factor: 8.029

10.  An altered FtsA can compensate for the loss of essential cell division protein FtsN in Escherichia coli.

Authors:  Christophe S Bernard; Mahalakshmi Sadasivam; Daisuke Shiomi; William Margolin
Journal:  Mol Microbiol       Date:  2007-06       Impact factor: 3.501

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  39 in total

1.  Self-Assembly of Metallacages into Multidimensional Suprastructures with Tunable Emissions.

Authors:  Yan Sun; Yong Yao; Heng Wang; Wenxin Fu; Chongyi Chen; Manik Lal Saha; Mingming Zhang; Sougata Datta; Zhixuan Zhou; Huaxu Yu; Xiaopeng Li; Peter J Stang
Journal:  J Am Chem Soc       Date:  2018-09-27       Impact factor: 15.419

2.  Dynamic translation regulation in Caulobacter cell cycle control.

Authors:  Jared M Schrader; Gene-Wei Li; W Seth Childers; Adam M Perez; Jonathan S Weissman; Lucy Shapiro; Harley H McAdams
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-17       Impact factor: 11.205

3.  Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities.

Authors:  Marinka Zitnik; Francis Nguyen; Bo Wang; Jure Leskovec; Anna Goldenberg; Michael M Hoffman
Journal:  Inf Fusion       Date:  2018-09-21       Impact factor: 12.975

4.  Global landscape of cell envelope protein complexes in Escherichia coli.

Authors:  Mohan Babu; Cedoljub Bundalovic-Torma; Charles Calmettes; Sadhna Phanse; Qingzhou Zhang; Yue Jiang; Zoran Minic; Sunyoung Kim; Jitender Mehla; Alla Gagarinova; Irina Rodionova; Ashwani Kumar; Hongbo Guo; Olga Kagan; Oxana Pogoutse; Hiroyuki Aoki; Viktor Deineko; J Harry Caufield; Erik Holtzapple; Zhongge Zhang; Ake Vastermark; Yogee Pandya; Christine Chieh-Lin Lai; Majida El Bakkouri; Yogesh Hooda; Megha Shah; Dan Burnside; Mohsen Hooshyar; James Vlasblom; Sessandra V Rajagopala; Ashkan Golshani; Stefan Wuchty; Jack F Greenblatt; Milton Saier; Peter Uetz; Trevor F Moraes; John Parkinson; Andrew Emili
Journal:  Nat Biotechnol       Date:  2017-11-27       Impact factor: 54.908

5.  A Network Biology Approach to Decipher Stress Response in Bacteria Using Escherichia coli As a Model.

Authors:  Shashwat Deepali Nagar; Bhavye Aggarwal; Shikha Joon; Rakesh Bhatnagar; Sonika Bhatnagar
Journal:  OMICS       Date:  2016-05

Review 6.  Evolutionary design principles in metabolism.

Authors:  Gayathri Sambamoorthy; Himanshu Sinha; Karthik Raman
Journal:  Proc Biol Sci       Date:  2019-03-13       Impact factor: 5.349

7.  Uncertainty in protein-ligand binding constants: asymmetric confidence intervals versus standard errors.

Authors:  Vaida Paketurytė; Vytautas Petrauskas; Asta Zubrienė; Olga Abian; Margarida Bastos; Wen-Yih Chen; Maria João Moreno; Georg Krainer; Vaida Linkuvienė; Arthur Sedivy; Adrian Velazquez-Campoy; Mark A Williams; Daumantas Matulis
Journal:  Eur Biophys J       Date:  2021-04-10       Impact factor: 1.733

8.  Plasmids shape the diverse accessory resistomes of Escherichia coli ST131.

Authors:  Arun Gonzales Decano; Nghia Tran; Hawriya Al-Foori; Buthaina Al-Awadi; Leigh Campbell; Kevin Ellison; Louisse Paolo Mirabueno; Maddy Nelson; Shane Power; Genevieve Smith; Cian Smyth; Zoe Vance; Caitriona Woods; Alexander Rahm; Tim Downing
Journal:  Access Microbiol       Date:  2020-11-18

9.  Combined Analysis of the Time-Resolved Transcriptome and Proteome of Plant Pathogen Xanthomonas oryzae pv. oryzae.

Authors:  Seunghwan Kim; Wooyoung Eric Jang; Jihwan Park; Min-Sik Kim; Jeong-Gu Kim; Lin-Woo Kang
Journal:  Front Microbiol       Date:  2021-06-02       Impact factor: 5.640

10.  Outer membrane lipoprotein NlpI scaffolds peptidoglycan hydrolases within multi-enzyme complexes in Escherichia coli.

Authors:  Manuel Banzhaf; Hamish Cl Yau; Jolanda Verheul; Adam Lodge; George Kritikos; André Mateus; Baptiste Cordier; Ann Kristin Hov; Frank Stein; Morgane Wartel; Manuel Pazos; Alexandra S Solovyova; Eefjan Breukink; Sven van Teeffelen; Mikhail M Savitski; Tanneke den Blaauwen; Athanasios Typas; Waldemar Vollmer
Journal:  EMBO J       Date:  2020-02-03       Impact factor: 14.012

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