Literature DB >> 26276634

An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.

Ernesto Arias-Palomo1, James M Berger2.   

Abstract

Transposons are ubiquitous genetic elements that drive genome rearrangements, evolution, and the spread of infectious disease and drug-resistance. Many transposons, such as Mu, Tn7, and IS21, require regulatory AAA+ ATPases for function. We use X-ray crystallography and cryo-electron microscopy to show that the ATPase subunit of IS21, IstB, assembles into a clamshell-shaped decamer that sandwiches DNA between two helical pentamers of ATP-associated AAA+ domains, sharply bending the duplex into a 180° U-turn. Biochemical studies corroborate key features of the structure and further show that the IS21 transposase, IstA, recognizes the IstB•DNA complex and promotes its disassembly by stimulating ATP hydrolysis. Collectively, these studies reveal a distinct manner of higher-order assembly and client engagement by a AAA+ ATPase and suggest a mechanistic model where IstB binding and subsequent DNA bending primes a selected insertion site for efficient transposition.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26276634      PMCID: PMC4537775          DOI: 10.1016/j.cell.2015.07.037

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  84 in total

1.  P element transposition in vitro proceeds by a cut-and-paste mechanism and uses GTP as a cofactor.

Authors:  P D Kaufman; D C Rio
Journal:  Cell       Date:  1992-04-03       Impact factor: 41.582

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  Evolutionary history and higher order classification of AAA+ ATPases.

Authors:  Lakshminarayan M Iyer; Detlef D Leipe; Eugene V Koonin; L Aravind
Journal:  J Struct Biol       Date:  2004 Apr-May       Impact factor: 2.867

4.  A protein factor which reduces the negative supercoiling requirement in the Mu DNA strand transfer reaction is Escherichia coli integration host factor.

Authors:  M G Surette; G Chaconas
Journal:  J Biol Chem       Date:  1989-02-15       Impact factor: 5.157

5.  MuB protein allosterically activates strand transfer by the transposase of phage Mu.

Authors:  T A Baker; M Mizuuchi; K Mizuuchi
Journal:  Cell       Date:  1991-06-14       Impact factor: 41.582

6.  Genetic structure, function and regulation of the transposable element IS21.

Authors:  C Reimmann; R Moore; S Little; A Savioz; N S Willetts; D Haas
Journal:  Mol Gen Genet       Date:  1989-02

7.  Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis.

Authors:  P S G Chain; E Carniel; F W Larimer; J Lamerdin; P O Stoutland; W M Regala; A M Georgescu; L M Vergez; M L Land; V L Motin; R R Brubaker; J Fowler; J Hinnebusch; M Marceau; C Medigue; M Simonet; V Chenal-Francisque; B Souza; D Dacheux; J M Elliott; A Derbise; L J Hauser; E Garcia
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-09       Impact factor: 11.205

8.  The nucleotide sequence of the B gene of bacteriophage Mu.

Authors:  J L Miller; S K Anderson; D J Fujita; G Chaconas; D L Baldwin; R M Harshey
Journal:  Nucleic Acids Res       Date:  1984-11-26       Impact factor: 16.971

9.  B protein of bacteriophage mu is an ATPase that preferentially stimulates intermolecular DNA strand transfer.

Authors:  A Maxwell; R Craigie; K Mizuuchi
Journal:  Proc Natl Acad Sci U S A       Date:  1987-02       Impact factor: 11.205

10.  The istA gene of insertion sequence IS21 is essential for cleavage at the inner 3' ends of tandemly repeated IS21 elements in vitro.

Authors:  C Reimmann; D Haas
Journal:  EMBO J       Date:  1990-12       Impact factor: 11.598

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  18 in total

1.  An AAA+ ATPase Clamshell Targets Transposition.

Authors:  Chi-Lin Tsai; Gareth J Williams; J Jefferson P Perry; John A Tainer
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

2.  Defining the crucial domain and amino acid residues in bacterial Lon protease for DNA binding and processing of DNA-interacting substrates.

Authors:  Anna Karlowicz; Katarzyna Wegrzyn; Marta Gross; Dagmara Kaczynska; Malgorzata Ropelewska; Małgorzata Siemiątkowska; Janusz M Bujnicki; Igor Konieczny
Journal:  J Biol Chem       Date:  2017-03-14       Impact factor: 5.157

3.  Unlocking Tn3-family transposase activity in vitro unveils an asymetric pathway for transposome assembly.

Authors:  Emilien Nicolas; Cédric A Oger; Nathan Nguyen; Michaël Lambin; Amandine Draime; Sébastien C Leterme; Michael Chandler; Bernard F J Hallet
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

4.  Unfolding the mechanism of the AAA+ unfoldase VAT by a combined cryo-EM, solution NMR study.

Authors:  Rui Huang; Zev A Ripstein; Rafal Augustyniak; Michal Lazniewski; Krzysztof Ginalski; Lewis E Kay; John L Rubinstein
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-11       Impact factor: 11.205

Review 5.  Assessing heterogeneity in oligomeric AAA+ machines.

Authors:  Tatyana A Sysoeva
Journal:  Cell Mol Life Sci       Date:  2016-09-26       Impact factor: 9.261

6.  Physical Basis for the Loading of a Bacterial Replicative Helicase onto DNA.

Authors:  Ernesto Arias-Palomo; Neha Puri; Valerie L O'Shea Murray; Qianyun Yan; James M Berger
Journal:  Mol Cell       Date:  2019-02-20       Impact factor: 17.970

7.  Structural basis for target site selection in RNA-guided DNA transposition systems.

Authors:  Amy Wei-Lun Tsai; Eshan Mehrotra; Michael T Petassi; Shan-Chi Hsieh; Jung-Un Park; Ailong Ke; Joseph E Peters; Elizabeth H Kellogg
Journal:  Science       Date:  2021-07-15       Impact factor: 63.714

8.  Structural basis for DNA targeting by the Tn7 transposon.

Authors:  Yao Shen; Josue Gomez-Blanco; Michael T Petassi; Joseph E Peters; Joaquin Ortega; Alba Guarné
Journal:  Nat Struct Mol Biol       Date:  2022-02-16       Impact factor: 18.361

9.  Target site selection and remodelling by type V CRISPR-transposon systems.

Authors:  Irma Querques; Michael Schmitz; Seraina Oberli; Christelle Chanez; Martin Jinek
Journal:  Nature       Date:  2021-11-10       Impact factor: 69.504

10.  Regulation of solvent tolerance in Pseudomonas putida S12 mediated by mobile elements.

Authors:  Rohola Hosseini; Jannis Kuepper; Sebastian Koebbing; Lars M Blank; Nick Wierckx; Johannes H de Winde
Journal:  Microb Biotechnol       Date:  2017-04-11       Impact factor: 5.813

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