Literature DB >> 23541162

Torque measurement at the single-molecule level.

Scott Forth1, Maxim Y Sheinin, James Inman, Michelle D Wang.   

Abstract

Methods for exerting and measuring forces on single molecules have revolutionized the study of the physics of biology. However, it is often the case that biological processes involve rotation or torque generation, and these parameters have been more difficult to access experimentally. Recent advances in the single-molecule field have led to the development of techniques that add the capability of torque measurement. By combining force, displacement, torque, and rotational data, a more comprehensive description of the mechanics of a biomolecule can be achieved. In this review, we highlight a number of biological processes for which torque plays a key mechanical role. We describe the various techniques that have been developed to directly probe the torque experienced by a single molecule, and detail a variety of measurements made to date using these new technologies. We conclude by discussing a number of open questions and propose systems of study that would be well suited for analysis with torsional measurement techniques.

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Year:  2013        PMID: 23541162      PMCID: PMC5515228          DOI: 10.1146/annurev-biophys-083012-130412

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  112 in total

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Authors:  G J Wuite; S B Smith; M Young; D Keller; C Bustamante
Journal:  Nature       Date:  2000-03-02       Impact factor: 49.962

4.  Direct mechanical measurements reveal the material properties of three-dimensional DNA origami.

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Review 5.  Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription.

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6.  Distinguishing the roles of Topoisomerases I and II in relief of transcription-induced torsional stress in yeast rRNA genes.

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Review 7.  Giant proteins that move DNA: bullies of the genomic playground.

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8.  Following translation by single ribosomes one codon at a time.

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Authors:  R M Berry; H C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-23       Impact factor: 11.205

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  27 in total

Review 1.  Rescuing Replication from Barriers: Mechanistic Insights from Single-Molecule Studies.

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Authors:  Yeonee Seol; Keir C Neuman
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4.  Dynamics of the Buckling Transition in Double-Stranded DNA and RNA.

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Journal:  Biophys J       Date:  2020-02-29       Impact factor: 4.033

Review 5.  Emerging roles for R-loop structures in the management of topological stress.

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6.  Transfer-matrix calculations of the effects of tension and torque constraints on DNA-protein interactions.

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Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

7.  A Tour de Force on the Double Helix: Exploiting DNA Mechanics To Study DNA-Based Molecular Machines.

Authors:  Michael R Wasserman; Shixin Liu
Journal:  Biochemistry       Date:  2019-06-28       Impact factor: 3.162

8.  The Dynamic Interplay Between DNA Topoisomerases and DNA Topology.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Biophys Rev       Date:  2016-07-02

9.  High Trap Stiffness Microcylinders for Nanophotonic Trapping.

Authors:  Ryan P Badman; Fan Ye; Wagma Caravan; Michelle D Wang
Journal:  ACS Appl Mater Interfaces       Date:  2019-07-05       Impact factor: 9.229

10.  DNA supercoiling during transcription.

Authors:  Jie Ma; Michelle D Wang
Journal:  Biophys Rev       Date:  2016-07-13
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