Literature DB >> 22047401

Direct mechanical measurements reveal the material properties of three-dimensional DNA origami.

Dominik J Kauert1, Thomas Kurth, Tim Liedl, Ralf Seidel.   

Abstract

The application of three-dimensional DNA origami objects as rigid mechanical mediators or force sensing elements requires detailed knowledge about their complex mechanical properties. Using magnetic tweezers, we directly measure the bending and torsional rigidities of four- and six-helix bundles assembled by this technique. Compared to duplex DNA, we find the bending rigidities to be greatly increased while the torsional rigidities are only moderately augmented. We present a mechanical model explicitly including the crossovers between the individual helices in the origami structure that reproduces the experimentally observed behavior. Our results provide an important basis for the future application of 3D DNA origami in nanomechanics.

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Year:  2011        PMID: 22047401     DOI: 10.1021/nl203503s

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  41 in total

1.  In situ structure and dynamics of DNA origami determined through molecular dynamics simulations.

Authors:  Jejoong Yoo; Aleksei Aksimentiev
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-25       Impact factor: 11.205

2.  Programmable motion of DNA origami mechanisms.

Authors:  Alexander E Marras; Lifeng Zhou; Hai-Jun Su; Carlos E Castro
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-05       Impact factor: 11.205

3.  Twist-bend coupling and the statistical mechanics of the twistable wormlike-chain model of DNA: Perturbation theory and beyond.

Authors:  Stefanos K Nomidis; Enrico Skoruppa; Enrico Carlon; John F Marko
Journal:  Phys Rev E       Date:  2019-03       Impact factor: 2.529

4.  Torsion profiling of proteins using magnetic particles.

Authors:  A van Reenen; F Gutiérrez-Mejía; L J van IJzendoorn; M W J Prins
Journal:  Biophys J       Date:  2013-03-05       Impact factor: 4.033

5.  DNA origami-based standards for quantitative fluorescence microscopy.

Authors:  Jürgen J Schmied; Mario Raab; Carsten Forthmann; Enrico Pibiri; Bettina Wünsch; Thorben Dammeyer; Philip Tinnefeld
Journal:  Nat Protoc       Date:  2014-05-15       Impact factor: 13.491

6.  Digitally encoded DNA nanostructures for multiplexed, single-molecule protein sensing with nanopores.

Authors:  Nicholas A W Bell; Ulrich F Keyser
Journal:  Nat Nanotechnol       Date:  2016-04-04       Impact factor: 39.213

7.  Quantifying the Precision of Single-Molecule Torque and Twist Measurements Using Allan Variance.

Authors:  Maarten M van Oene; Seungkyu Ha; Tessa Jager; Mina Lee; Francesco Pedaci; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

8.  Single molecule analysis of structural fluctuations in DNA nanostructures.

Authors:  Mette D E Jepsen; Rasmus Schøler Sørensen; Christopher Maffeo; Aleksei Aksimentiev; Jørgen Kjems; Victoria Birkedal
Journal:  Nanoscale       Date:  2019-10-10       Impact factor: 7.790

9.  Investigating the sequence-dependent mechanical properties of DNA nicks for applications in twisted DNA nanostructure design.

Authors:  Jae Young Lee; Young-Joo Kim; Chanseok Lee; Jae Gyung Lee; Hiromasa Yagyu; Osamu Tabata; Do-Nyun Kim
Journal:  Nucleic Acids Res       Date:  2019-01-10       Impact factor: 16.971

10.  Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges.

Authors:  Hyungmin Jun; Tyson R Shepherd; Kaiming Zhang; William P Bricker; Shanshan Li; Wah Chiu; Mark Bathe
Journal:  ACS Nano       Date:  2019-01-24       Impact factor: 15.881

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