Literature DB >> 16936698

Giant proteins that move DNA: bullies of the genomic playground.

Nicholas R Cozzarelli1, Gregory J Cost, Marcelo Nöllmann, Thierry Viard, James E Stray.   

Abstract

As genetic material DNA is wonderful, but as a macromolecule it is unruly, voluminous and fragile. Without the action of DNA replicases, topoisomerases, helicases, translocases and recombinases, the genome would collapse into a topologically entangled random coil that would be useless to the cell. We discuss the organization, movement and energetics of these proteins that are crucial to the preservation of a molecule that has such beautiful biological but challenging physical properties.

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Year:  2006        PMID: 16936698     DOI: 10.1038/nrm1982

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  14 in total

1.  Cell-specific SpoIIIE assembly and DNA translocation polarity are dictated by chromosome orientation.

Authors:  Eric C Becker; Kit Pogliano
Journal:  Mol Microbiol       Date:  2007-12       Impact factor: 3.501

Review 2.  Modeling stochastic kinetics of molecular machines at multiple levels: from molecules to modules.

Authors:  Debashish Chowdhury
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

3.  Modulation of T4 gene 32 protein DNA binding activity by the recombination mediator protein UvsY.

Authors:  Kiran Pant; Leila Shokri; Richard L Karpel; Scott W Morrical; Mark C Williams
Journal:  J Mol Biol       Date:  2008-05-24       Impact factor: 5.469

4.  Linker histones incorporation maintains chromatin fiber plasticity.

Authors:  Pierre Recouvreux; Christophe Lavelle; Maria Barbi; Natalia Conde E Silva; Eric Le Cam; Jean-Marc Victor; Jean-Louis Viovy
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

5.  Understanding the mechanical response of double-stranded DNA and RNA under constant stretching forces using all-atom molecular dynamics.

Authors:  Alberto Marin-Gonzalez; J G Vilhena; Ruben Perez; Fernando Moreno-Herrero
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-20       Impact factor: 11.205

6.  Dynamics of the Buckling Transition in Double-Stranded DNA and RNA.

Authors:  Katharina Ott; Linda Martini; Jan Lipfert; Ulrich Gerland
Journal:  Biophys J       Date:  2020-02-29       Impact factor: 4.033

Review 7.  Emerging roles for R-loop structures in the management of topological stress.

Authors:  Frederic Chedin; Craig J Benham
Journal:  J Biol Chem       Date:  2020-02-27       Impact factor: 5.157

8.  Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers.

Authors:  Franziska Kriegel; Niklas Ermann; Ruaridh Forbes; David Dulin; Nynke H Dekker; Jan Lipfert
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

9.  Twist-stretch coupling and phase transition during DNA supercoiling.

Authors:  Maxim Y Sheinin; Michelle D Wang
Journal:  Phys Chem Chem Phys       Date:  2009-05-14       Impact factor: 3.676

Review 10.  Bullied no more: when and how DNA shoves proteins around.

Authors:  Jonathan M Fogg; Graham L Randall; B Montgomery Pettitt; De Witt L Sumners; Sarah A Harris; Lynn Zechiedrich
Journal:  Q Rev Biophys       Date:  2012-07-31       Impact factor: 5.318

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