Literature DB >> 23531104

Histone modification via rapid cleavage of C4'-oxidized abasic sites in nucleosome core particles.

Chuanzheng Zhou1, Jonathan T Sczepanski, Marc M Greenberg.   

Abstract

The C4'-oxidized abasic site is produced in DNA by a variety of oxidizing agents, including potent cytotoxic antitumor agents. Independent generation of this alkali-labile lesion at defined positions within nucleosome core particles reveals that the histone proteins increase strand scission between 130- and 550-fold. Strand scission proceeds via a Schiff base intermediate, but the DNA-protein cross-links are unstable. The oxidized abasic site is removed in its entirety from the DNA and transferred to the lysine-rich tail region of the proximal histone protein in the form of a lactam. The modification is distributed over several residues within the amino-terminal tail of the proximal histone. Transfer of DNA damage to histones could affect gene regulation.

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Year:  2013        PMID: 23531104      PMCID: PMC3638250          DOI: 10.1021/ja400915w

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

1.  A method for detecting abasic sites in living cells: age-dependent changes in base excision repair.

Authors:  H Atamna; I Cheung; B N Ames
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

2.  Effects of the C4'-oxidized abasic site on replication in Escherichia coli. An unusually large deletion is induced by a small lesion.

Authors:  Kelly M Kroeger; Jaeseung Kim; Myron F Goodman; Marc M Greenberg
Journal:  Biochemistry       Date:  2004-11-02       Impact factor: 3.162

3.  Self-promoted DNA interstrand cross-link formation by an abasic site.

Authors:  Jonathan T Sczepanski; Aaron C Jacobs; Marc M Greenberg
Journal:  J Am Chem Soc       Date:  2008-07-01       Impact factor: 15.419

4.  Cleavage by calicheamicin gamma 1I of DNA in a nucleosome formed on the 5S RNA gene of Xenopus borealis.

Authors:  P N Kuduvalli; C A Townsend; T D Tullius
Journal:  Biochemistry       Date:  1995-03-28       Impact factor: 3.162

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent.

Authors:  Gabriela E Davey; Bin Wu; Yuancai Dong; Uttam Surana; Curt A Davey
Journal:  Nucleic Acids Res       Date:  2009-12-21       Impact factor: 16.971

7.  Mechanistic studies on histone catalyzed cleavage of apyrimidinic/apurinic sites in nucleosome core particles.

Authors:  Chuanzheng Zhou; Jonathan T Sczepanski; Marc M Greenberg
Journal:  J Am Chem Soc       Date:  2012-09-28       Impact factor: 15.419

8.  Histone-catalyzed cleavage of nucleosomal DNA containing 2-deoxyribonolactone.

Authors:  Chuanzheng Zhou; Marc M Greenberg
Journal:  J Am Chem Soc       Date:  2012-05-02       Impact factor: 15.419

9.  Long patch base excision repair compensates for DNA polymerase β inactivation by the C4'-oxidized abasic site.

Authors:  Aaron C Jacobs; Cortney R Kreller; Marc M Greenberg
Journal:  Biochemistry       Date:  2010-12-14       Impact factor: 3.162

10.  DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone.

Authors:  B Balasubramanian; W K Pogozelski; T D Tullius
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-18       Impact factor: 11.205

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  25 in total

1.  Rapid Histone-Catalyzed DNA Lesion Excision and Accompanying Protein Modification in Nucleosomes and Nucleosome Core Particles.

Authors:  Liwei Weng; Marc M Greenberg
Journal:  J Am Chem Soc       Date:  2015-08-20       Impact factor: 15.419

2.  Thiol Specific and Tracelessly Removable Bioconjugation via Michael Addition to 5-Methylene Pyrrolones.

Authors:  Yingqian Zhang; Xiaoping Zhou; Yonghui Xie; Marc M Greenberg; Zhen Xi; Chuanzheng Zhou
Journal:  J Am Chem Soc       Date:  2017-04-20       Impact factor: 15.419

Review 3.  Looking beneath the surface to determine what makes DNA damage deleterious.

Authors:  Marc M Greenberg
Journal:  Curr Opin Chem Biol       Date:  2014-04-22       Impact factor: 8.822

4.  Reactivity of Nucleic Acid Radicals.

Authors:  Marc M Greenberg
Journal:  Adv Phys Org Chem       Date:  2016       Impact factor: 2.833

5.  Synthesis of 5-Methylene-2-pyrrolones.

Authors:  Marco Paolo Jacinto; Patricio Pichling; Marc M Greenberg
Journal:  Org Lett       Date:  2018-07-31       Impact factor: 6.005

6.  Probing Enhanced Double-Strand Break Formation at Abasic Sites within Clustered Lesions in Nucleosome Core Particles.

Authors:  Samya Banerjee; Supratim Chakraborty; Marco Paolo Jacinto; Michael D Paul; Morgan V Balster; Marc M Greenberg
Journal:  Biochemistry       Date:  2016-12-22       Impact factor: 3.162

7.  Oxidation of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Leads to Substantial DNA-Histone Cross-Links within Nucleosome Core Particles.

Authors:  Jing Bai; Yingqian Zhang; Zhen Xi; Marc M Greenberg; Chuanzheng Zhou
Journal:  Chem Res Toxicol       Date:  2018-11-19       Impact factor: 3.739

8.  Histone tails decrease N7-methyl-2'-deoxyguanosine depurination and yield DNA-protein cross-links in nucleosome core particles and cells.

Authors:  Kun Yang; Daeyoon Park; Natalia Y Tretyakova; Marc M Greenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-14       Impact factor: 11.205

Review 9.  Histone variants: the tricksters of the chromatin world.

Authors:  Catherine Volle; Yamini Dalal
Journal:  Curr Opin Genet Dev       Date:  2014-01-24       Impact factor: 5.578

10.  Abasic and oxidized abasic site reactivity in DNA: enzyme inhibition, cross-linking, and nucleosome catalyzed reactions.

Authors:  Marc M Greenberg
Journal:  Acc Chem Res       Date:  2013-12-26       Impact factor: 22.384

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