Literature DB >> 23528086

Tilting and wobble of myosin V by high-speed single-molecule polarized fluorescence microscopy.

John F Beausang1, Deborah Y Shroder, Philip C Nelson, Yale E Goldman.   

Abstract

Myosin V is biomolecular motor with two actin-binding domains (heads) that take multiple steps along actin by a hand-over-hand mechanism. We used high-speed polarized total internal reflection fluorescence (polTIRF) microscopy to study the structural dynamics of single myosin V molecules that had been labeled with bifunctional rhodamine linked to one of the calmodulins along the lever arm. With the use of time-correlated single-photon counting technology, the temporal resolution of the polTIRF microscope was improved ~50-fold relative to earlier studies, and a maximum-likelihood, multitrace change-point algorithm was used to objectively determine the times when structural changes occurred. Short-lived substeps that displayed an abrupt increase in rotational mobility were detected during stepping, likely corresponding to random thermal fluctuations of the stepping head while it searched for its next actin-binding site. Thus, myosin V harnesses its fluctuating environment to extend its reach. Additional, less frequent angle changes, probably not directly associated with steps, were detected in both leading and trailing heads. The high-speed polTIRF method and change-point analysis may be applicable to single-molecule studies of other biological systems.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23528086      PMCID: PMC3602762          DOI: 10.1016/j.bpj.2013.01.057

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  49 in total

1.  Spectral fluctuation of a single fluorophore conjugated to a protein molecule.

Authors:  T Wazawa; Y Ishii; T Funatsu; T Yanagida
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

2.  Video imaging of walking myosin V by high-speed atomic force microscopy.

Authors:  Noriyuki Kodera; Daisuke Yamamoto; Ryoki Ishikawa; Toshio Ando
Journal:  Nature       Date:  2010-10-10       Impact factor: 49.962

3.  Measurement of single macromolecule orientation by total internal reflection fluorescence polarization microscopy.

Authors:  Joseph N Forkey; Margot E Quinlan; Yale E Goldman
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

4.  Myosin V walks by lever action and Brownian motion.

Authors:  Katsuyuki Shiroguchi; Kazuhiko Kinosita
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

Review 5.  Advances in single-molecule fluorescence methods for molecular biology.

Authors:  Chirlmin Joo; Hamza Balci; Yuji Ishitsuka; Chittanon Buranachai; Taekjip Ha
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

6.  The kinetic mechanism of myosin V.

Authors:  E M De La Cruz; A L Wells; S S Rosenfeld; E M Ostap; H L Sweeney
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

7.  Role of the lever arm in the processive stepping of myosin V.

Authors:  Thomas J Purcell; Carl Morris; James A Spudich; H Lee Sweeney
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-17       Impact factor: 11.205

8.  Orientation of the myosin light chain region by single molecule total internal reflection fluorescence polarization microscopy.

Authors:  Margot E Quinlan; Joseph N Forkey; Yale E Goldman
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

9.  The stiffness of rabbit skeletal actomyosin cross-bridges determined with an optical tweezers transducer.

Authors:  C Veigel; M L Bartoo; D C White; J C Sparrow; J E Molloy
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

10.  Myosin V stepping mechanism.

Authors:  Giovanni Cappello; Paolo Pierobon; Clémentine Symonds; Lorenzo Busoni; J Christof M Gebhardt; Matthias Rief; Jacques Prost
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

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  26 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-08       Impact factor: 11.205

2.  Single-molecule FRET and linear dichroism studies of DNA breathing and helicase binding at replication fork junctions.

Authors:  Carey Phelps; Wonbae Lee; Davis Jose; Peter H von Hippel; Andrew H Marcus
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

3.  Single molecule optical measurements of orientation and rotations of biological macromolecules.

Authors:  Deborah Y Shroder; Lisa G Lippert; Yale E Goldman
Journal:  Methods Appl Fluoresc       Date:  2016-11-22       Impact factor: 3.009

4.  Nanoscale protein domain motion and long-range allostery in signaling proteins- a view from neutron spin echo sprectroscopy.

Authors:  David J E Callaway; Zimei Bu
Journal:  Biophys Rev       Date:  2015-06

5.  Determining the rotational mobility of a single molecule from a single image: a numerical study.

Authors:  Adam S Backer; W E Moerner
Journal:  Opt Express       Date:  2015-02-23       Impact factor: 3.894

6.  Angular measurements of the dynein ring reveal a stepping mechanism dependent on a flexible stalk.

Authors:  Lisa G Lippert; Tali Dadosh; Jodi A Hadden; Vishakha Karnawat; Benjamin T Diroll; Christopher B Murray; Erika L F Holzbaur; Klaus Schulten; Samara L Reck-Peterson; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

7.  Imaging the three-dimensional orientation and rotational mobility of fluorescent emitters using the Tri-spot point spread function.

Authors:  Oumeng Zhang; Jin Lu; Tianben Ding; Matthew D Lew
Journal:  Appl Phys Lett       Date:  2018-07-17       Impact factor: 3.791

8.  Breaking the millisecond barrier: single molecule motors wobble to find their next binding sites.

Authors:  Christopher L Berger
Journal:  Biophys J       Date:  2013-03-19       Impact factor: 4.033

9.  Polarization-controlled TIRFM with focal drift and spatial field intensity correction.

Authors:  Daniel S Johnson; Ricardo Toledo-Crow; Alexa L Mattheyses; Sanford M Simon
Journal:  Biophys J       Date:  2014-03-04       Impact factor: 4.033

Review 10.  Life under the Microscope: Single-Molecule Fluorescence Highlights the RNA World.

Authors:  Sujay Ray; Julia R Widom; Nils G Walter
Journal:  Chem Rev       Date:  2018-01-24       Impact factor: 60.622

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