Literature DB >> 24106304

Electrostatic origin of the unidirectionality of walking myosin V motors.

Shayantani Mukherjee1, Arieh Warshel.   

Abstract

Understanding the basis for the action of myosin motors and related molecular machines requires a quantitative energy-based description of the overall functional cycle. Previous theoretical attempts to do so have provided interesting insights on parts of the cycle but could not generate a structure-based free energy landscape for the complete cycle of myosin. In particular, a nonphenomenological structure/energy-based understanding of the unidirectional motion is still missing. Here we use a coarse-grained model of myosin V and generate a structure-based free energy surface of the largest conformational change, namely the transition from the post- to prepowerstroke movement. We also couple the observed energetics of ligand binding/hydrolysis and product release to that of the conformational surface and reproduce the energetics of the complete mechanochemical cycle. It is found that the release in electrostatic free energy upon changing the conformation of the lever arm and the convertor domain from its post- to prepowerstroke state provides the necessary energy to bias the system towards the unidirectional movement of myosin V on the actin filament. The free energy change of 11 kcal is also in the range of ∼2-3 pN, which is consistent with the experimentally observed stalling force required to stop the motor completely on its track. The conformational-chemical coupling generating a successful powerstroke cycle is believed to be conserved among most members of the myosin family, thus highlighting the importance of the previously unknown role of electrostatics free energy in guiding the functional cycle in other actin-based myosin motors.

Entities:  

Keywords:  bioenergetics; conformation–chemical coupling; cytoskeletal proteins; intracellular transport; molecular motors

Mesh:

Substances:

Year:  2013        PMID: 24106304      PMCID: PMC3808596          DOI: 10.1073/pnas.1317641110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

Review 1.  Making molecules into motors.

Authors:  R D Astumian
Journal:  Sci Am       Date:  2001-07       Impact factor: 2.142

Review 2.  Relating biochemistry and function in the myosin superfamily.

Authors:  Enrique M De La Cruz; E Michael Ostap
Journal:  Curr Opin Cell Biol       Date:  2004-02       Impact factor: 8.382

3.  The kinetic mechanism of myosin V.

Authors:  E M De La Cruz; A L Wells; S S Rosenfeld; E M Ostap; H L Sweeney
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

4.  Myosin-V is a processive actin-based motor.

Authors:  A D Mehta; R S Rock; M Rief; J A Spudich; M S Mooseker; R E Cheney
Journal:  Nature       Date:  1999-08-05       Impact factor: 49.962

5.  Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization.

Authors:  Ahmet Yildiz; Joseph N Forkey; Sean A McKinney; Taekjip Ha; Yale E Goldman; Paul R Selvin
Journal:  Science       Date:  2003-06-05       Impact factor: 47.728

6.  Two-headed binding of a processive myosin to F-actin.

Authors:  M L Walker; S A Burgess; J R Sellers; F Wang; J A Hammer; J Trinick; P J Knight
Journal:  Nature       Date:  2000-06-15       Impact factor: 49.962

7.  Three-dimensional structure of myosin subfragment-1: a molecular motor.

Authors:  I Rayment; W R Rypniewski; K Schmidt-Bäse; R Smith; D R Tomchick; M M Benning; D A Winkelmann; G Wesenberg; H M Holden
Journal:  Science       Date:  1993-07-02       Impact factor: 47.728

8.  Design principles governing the motility of myosin V.

Authors:  Michael Hinczewski; Riina Tehver; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-07       Impact factor: 11.205

9.  Kinetic characterization of the weak binding states of myosin V.

Authors:  Christopher M Yengo; Enrique M De la Cruz; Daniel Safer; E Michael Ostap; H Lee Sweeney
Journal:  Biochemistry       Date:  2002-07-02       Impact factor: 3.162

10.  Myosin flexibility: structural domains and collective vibrations.

Authors:  Isabelle Navizet; Richard Lavery; Robert L Jernigan
Journal:  Proteins       Date:  2004-02-15
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  10 in total

1.  Irrelevance of the power stroke for the directionality, stopping force, and optimal efficiency of chemically driven molecular machines.

Authors:  R Dean Astumian
Journal:  Biophys J       Date:  2015-01-20       Impact factor: 4.033

2.  Simulating the dynamics of the mechanochemical cycle of myosin-V.

Authors:  Shayantani Mukherjee; Raphael Alhadeff; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-13       Impact factor: 11.205

3.  Response to Vilfan: Constructing structure-based free energy surfaces is the key to understand myosin V unidirectionality.

Authors:  Shayantani Mukherjee; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-20       Impact factor: 11.205

4.  Myosin directionality results from coupling between ATP hydrolysis, lever motion, and actin binding.

Authors:  Andrej Vilfan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-22       Impact factor: 11.205

Review 5.  Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics.

Authors:  Tatiana Maximova; Ryan Moffatt; Buyong Ma; Ruth Nussinov; Amarda Shehu
Journal:  PLoS Comput Biol       Date:  2016-04-28       Impact factor: 4.475

6.  Reexamining the origin of the directionality of myosin V.

Authors:  Raphael Alhadeff; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

Review 7.  The Physics and Physical Chemistry of Molecular Machines.

Authors:  R Dean Astumian; Shayantani Mukherjee; Arieh Warshel
Journal:  Chemphyschem       Date:  2016-06-15       Impact factor: 3.102

Review 8.  The FOF1 ATP synthase: from atomistic three-dimensional structure to the rotary-chemical function.

Authors:  Shayantani Mukherjee; Arieh Warshel
Journal:  Photosynth Res       Date:  2017-07-03       Impact factor: 3.573

9.  The mechanism of DNA unwinding by the eukaryotic replicative helicase.

Authors:  Daniel R Burnham; Hazal B Kose; Rebecca B Hoyle; Hasan Yardimci
Journal:  Nat Commun       Date:  2019-05-14       Impact factor: 14.919

10.  Strain Mediated Adaptation Is Key for Myosin Mechanochemistry: Discovering General Rules for Motor Activity.

Authors:  Biman Jana; José N Onuchic
Journal:  PLoS Comput Biol       Date:  2016-08-05       Impact factor: 4.475

  10 in total

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