Literature DB >> 23519330

Integration of solid-state nanopores in a 0.5 μm CMOS foundry process.

A Uddin1, S Yemenicioglu, C-H Chen, E Corigliano, K Milaninia, L Theogarajan.   

Abstract

High-bandwidth and low-noise nanopore sensor and detection electronics are crucial in achieving single-DNA-base resolution. A potential way to accomplish this goal is to integrate solid-state nanopores within a CMOS platform, in close proximity to the biasing electrodes and custom-designed amplifier electronics. Here we report the integration of solid-state nanopore devices in a commercial complementary metal-oxide-semiconductor (CMOS) potentiostat chip implemented in On-Semiconductor's 0.5 μm technology. Nanopore membranes incorporating electrodes are fabricated by post-CMOS micromachining utilizing the n+ polysilicon/SiO2/n+ polysilicon capacitor structure available in the aforementioned process. Nanopores are created in the CMOS process by drilling in a transmission electron microscope and shrinking by atomic layer deposition. We also describe a batch fabrication method to process a large of number of electrode-embedded nanopores with sub-10 nm diameter across CMOS-compatible wafers by electron beam lithography and atomic layer deposition. The CMOS-compatibility of our fabrication process is verified by testing the electrical functionality of on-chip circuitry. We observe high current leakage with the CMOS nanopore devices due to the ionic diffusion through the SiO2 membrane. To prevent this leakage, we coat the membrane with Al2O3, which acts as an efficient diffusion barrier against alkali ions. The resulting nanopore devices also exhibit higher robustness and lower 1/f noise as compared to SiO2 and SiNx. Furthermore, we propose a theoretical model for our low-capacitance CMOS nanopore devices, showing good agreement with the experimental value. In addition, experiments and theoretical models of translocation studies are presented using 48.5 kbp λ-DNA in order to prove the functionality of on-chip pores coated with Al2O3.

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Year:  2013        PMID: 23519330      PMCID: PMC3672232          DOI: 10.1088/0957-4484/24/15/155501

Source DB:  PubMed          Journal:  Nanotechnology        ISSN: 0957-4484            Impact factor:   3.874


  21 in total

1.  Translocation of double-strand DNA through a silicon oxide nanopore.

Authors:  A J Storm; J H Chen; H W Zandbergen; C Dekker
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-05-06

2.  Noise in solid-state nanopores.

Authors:  R M M Smeets; U F Keyser; N H Dekker; C Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-09       Impact factor: 11.205

3.  Continuous base identification for single-molecule nanopore DNA sequencing.

Authors:  James Clarke; Hai-Chen Wu; Lakmal Jayasinghe; Alpesh Patel; Stuart Reid; Hagan Bayley
Journal:  Nat Nanotechnol       Date:  2009-02-22       Impact factor: 39.213

Review 4.  Solid-state nanopores.

Authors:  Cees Dekker
Journal:  Nat Nanotechnol       Date:  2007-03-04       Impact factor: 39.213

Review 5.  Nanopore analytics: sensing of single molecules.

Authors:  Stefan Howorka; Zuzanna Siwy
Journal:  Chem Soc Rev       Date:  2009-06-15       Impact factor: 54.564

6.  Modeling the conductance and DNA blockade of solid-state nanopores.

Authors:  Stefan W Kowalczyk; Alexander Y Grosberg; Yitzhak Rabin; Cees Dekker
Journal:  Nanotechnology       Date:  2011-07-06       Impact factor: 3.874

7.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

8.  Atomic Layer Deposition to Fine-Tune the Surface Properties and Diameters of Fabricated Nanopores.

Authors:  Peng Chen; Toshiyuki Mitsui; Damon B Farmer; Jene Golovchenko; Roy G Gordon; Daniel Branton
Journal:  Nano Lett       Date:  2004-06-25       Impact factor: 11.189

Review 9.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  Access resistance of a small circular pore.

Authors:  J E Hall
Journal:  J Gen Physiol       Date:  1975-10       Impact factor: 4.086

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  7 in total

1.  Non-equilibrium folding of individual DNA molecules recaptured up to 1000 times in a solid state nanopore.

Authors:  Calin Plesa; Ludo Cornelissen; Maarten W Tuijtel; Cees Dekker
Journal:  Nanotechnology       Date:  2013-10-31       Impact factor: 3.874

Review 2.  Fundamental studies of nanofluidics: nanopores, nanochannels, and nanopipets.

Authors:  Daniel G Haywood; Anumita Saha-Shah; Lane A Baker; Stephen C Jacobson
Journal:  Anal Chem       Date:  2014-12-03       Impact factor: 6.986

3.  Nanopore-Based Target Sequence Detection.

Authors:  Trevor J Morin; Tyler Shropshire; Xu Liu; Kyle Briggs; Cindy Huynh; Vincent Tabard-Cossa; Hongyun Wang; William B Dunbar
Journal:  PLoS One       Date:  2016-05-05       Impact factor: 3.240

4.  A Multidisciplinary Approach to High Throughput Nuclear Magnetic Resonance Spectroscopy.

Authors:  Hossein Pourmodheji; Ebrahim Ghafar-Zadeh; Sebastian Magierowski
Journal:  Sensors (Basel)       Date:  2016-06-09       Impact factor: 3.576

Review 5.  Nanopore-CMOS Interfaces for DNA Sequencing.

Authors:  Sebastian Magierowski; Yiyun Huang; Chengjie Wang; Ebrahim Ghafar-Zadeh
Journal:  Biosensors (Basel)       Date:  2016-08-06

6.  Scalable fabrication of sub-10 nm polymer nanopores for DNA analysis.

Authors:  Junseo Choi; Charles C Lee; Sunggook Park
Journal:  Microsyst Nanoeng       Date:  2019-04-08       Impact factor: 7.127

Review 7.  Beyond mass spectrometry, the next step in proteomics.

Authors:  Winston Timp; Gregory Timp
Journal:  Sci Adv       Date:  2020-01-10       Impact factor: 14.136

  7 in total

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