Literature DB >> 18184817

Noise in solid-state nanopores.

R M M Smeets1, U F Keyser, N H Dekker, C Dekker.   

Abstract

We study ionic current fluctuations in solid-state nanopores over a wide frequency range and present a complete description of the noise characteristics. At low frequencies (f approximately < 100 Hz) we observe 1/f-type of noise. We analyze this low-frequency noise at different salt concentrations and find that the noise power remarkably scales linearly with the inverse number of charge carriers, in agreement with Hooge's relation. We find a Hooge parameter alpha = (1.1 +/- 0.1) x 10(-4). In the high-frequency regime (f approximately > 1 kHz), we can model the increase in current power spectral density with frequency through a calculation of the Johnson noise. Finally, we use these results to compute the signal-to-noise ratio for DNA translocation for different salt concentrations and nanopore diameters, yielding the parameters for optimal detection efficiency.

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Year:  2008        PMID: 18184817      PMCID: PMC2206550          DOI: 10.1073/pnas.0705349105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

2.  Examining noise sources at the single-molecule level: 1/f noise of an open maltoporin channel.

Authors:  S M Bezrukov; M Winterhalter
Journal:  Phys Rev Lett       Date:  2000-07-03       Impact factor: 9.161

3.  Fabrication of solid-state nanopores with single-nanometre precision.

Authors:  A J Storm; J H Chen; X S Ling; H W Zandbergen; C Dekker
Journal:  Nat Mater       Date:  2003-08       Impact factor: 43.841

4.  Origin of 1/f(alpha) noise in membrane channel currents.

Authors:  Z Siwy; A Fuliński
Journal:  Phys Rev Lett       Date:  2002-09-20       Impact factor: 9.161

5.  Fabrication and characterization of nanopore-based electrodes with radii down to 2 nm.

Authors:  Diego Krapf; Meng-Yue Wu; Ralph M M Smeets; Henny W Zandbergen; Cees Dekker; Serge G Lemay
Journal:  Nano Lett       Date:  2006-01       Impact factor: 11.189

Review 6.  Solid-state nanopores.

Authors:  Cees Dekker
Journal:  Nat Nanotechnol       Date:  2007-03-04       Impact factor: 39.213

7.  Transport of maltodextrins through maltoporin: a single-channel study.

Authors:  Lisen Kullman; Mathias Winterhalter; Sergey M Bezrukov
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

8.  1/f-Noise of open bacterial porin channels.

Authors:  F Wohnsland; R Benz
Journal:  J Membr Biol       Date:  1997-07-01       Impact factor: 1.843

9.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

10.  Atomic Layer Deposition to Fine-Tune the Surface Properties and Diameters of Fabricated Nanopores.

Authors:  Peng Chen; Toshiyuki Mitsui; Damon B Farmer; Jene Golovchenko; Roy G Gordon; Daniel Branton
Journal:  Nano Lett       Date:  2004-06-25       Impact factor: 11.189

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  77 in total

1.  Altered plasmodial surface anion channel activity and in vitro resistance to permeating antimalarial compounds.

Authors:  Godfrey Lisk; Margaret Pain; Morgan Sellers; Philip A Gurnev; Ajay D Pillai; Sergey M Bezrukov; Sanjay A Desai
Journal:  Biochim Biophys Acta       Date:  2010-05-06

2.  Nanometer-thin solid-state nanopores by cold ion beam sculpting.

Authors:  Aaron T Kuan; Jene A Golovchenko
Journal:  Appl Phys Lett       Date:  2012-05-21       Impact factor: 3.791

3.  Voltage-gated ion transport through semiconducting conical nanopores formed by metal nanoparticle-assisted plasma etching.

Authors:  Teena James; Yevgeniy V Kalinin; Chih-Chieh Chan; Jatinder S Randhawa; Mikhail Gaevski; David H Gracias
Journal:  Nano Lett       Date:  2012-06-28       Impact factor: 11.189

4.  Using a nanopore for single molecule detection and single cell transfection.

Authors:  Edward M Nelson; Volker Kurz; Jiwook Shim; Winston Timp; Gregory Timp
Journal:  Analyst       Date:  2012-05-29       Impact factor: 4.616

5.  Relaxation and fluctuations of the number of particles in a membrane channel at arbitrary particle-channel interaction.

Authors:  Vladimir Yu Zitserman; Alexander M Berezhkovskii; Mark A Pustovoit; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2008-09-07       Impact factor: 3.488

Review 6.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

7.  Single-molecule bonds characterized by solid-state nanopore force spectroscopy.

Authors:  Vincent Tabard-Cossa; Matthew Wiggin; Dhruti Trivedi; Nahid N Jetha; Jason R Dwyer; Andre Marziali
Journal:  ACS Nano       Date:  2009-10-27       Impact factor: 15.881

8.  Single-molecule transport across an individual biomimetic nuclear pore complex.

Authors:  Stefan W Kowalczyk; Larisa Kapinos; Timothy R Blosser; Tomás Magalhães; Pauline van Nies; Roderick Y H Lim; Cees Dekker
Journal:  Nat Nanotechnol       Date:  2011-06-19       Impact factor: 39.213

9.  Optical and electrical detection of single-molecule translocation through carbon nanotubes.

Authors:  Weisi Song; Pei Pang; Jin He; Stuart Lindsay
Journal:  ACS Nano       Date:  2012-12-24       Impact factor: 15.881

10.  Analyzing the forces binding a restriction endonuclease to DNA using a synthetic nanopore.

Authors:  B Dorvel; G Sigalov; Q Zhao; J Comer; V Dimitrov; U Mirsaidov; A Aksimentiev; G Timp
Journal:  Nucleic Acids Res       Date:  2009-05-11       Impact factor: 16.971

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