Literature DB >> 16089567

Translocation of double-strand DNA through a silicon oxide nanopore.

A J Storm1, J H Chen, H W Zandbergen, C Dekker.   

Abstract

We report double-strand DNA translocation experiments using silicon oxide nanopores with a diameter of about 10 nm . By monitoring the conductance of a voltage-biased pore, we detect molecules with a length ranging from 6557 to 48 500 base pairs. We find that the molecules can pass the pore both in a straight linear fashion and in a folded state. Experiments on circular DNA further support this picture. We sort the molecular events according to their folding state and estimate the folding position. As a proof-of-principle experiment, we show that a nanopore can be used to distinguish the lengths of DNA fragments present in a mixture. These experiments pave the way for quantitative analytical techniques with solid-state nanopores.

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Year:  2005        PMID: 16089567     DOI: 10.1103/PhysRevE.71.051903

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  114 in total

1.  DNA translocation through an array of kinked nanopores.

Authors:  Zhu Chen; Yingbing Jiang; Darren R Dunphy; David P Adams; Carter Hodges; Nanguo Liu; Nan Zhang; George Xomeritakis; Xiaozhong Jin; N R Aluru; Steven J Gaik; Hugh W Hillhouse; C Jeffrey Brinker
Journal:  Nat Mater       Date:  2010-08       Impact factor: 43.841

2.  DNA translocation and unzipping through a nanopore: some geometrical effects.

Authors:  J Muzard; M Martinho; J Mathé; U Bockelmann; V Viasnoff
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

3.  Synchronous optical and electrical detection of biomolecules traversing through solid-state nanopores.

Authors:  Gautam V Soni; Alon Singer; Zhiliang Yu; Yingjie Sun; Ben McNally; Amit Meller
Journal:  Rev Sci Instrum       Date:  2010-01       Impact factor: 1.523

4.  Theory of capture rate in polymer translocation.

Authors:  M Muthukumar
Journal:  J Chem Phys       Date:  2010-05-21       Impact factor: 3.488

5.  Cooperative translocation dynamics of biopolymer chains through nanopores in a membrane: Slow dynamics limit.

Authors:  Hai-Jun Wang; Fang Gu; Xiao-Zhong Hong; Xin-Wu Ba
Journal:  Eur Phys J E Soft Matter       Date:  2010-10-31       Impact factor: 1.890

6.  Distinguishable populations report on the interactions of single DNA molecules with solid-state nanopores.

Authors:  Michiel van den Hout; Vincent Krudde; Xander J A Janssen; Nynke H Dekker
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

7.  Deciphering ionic current signatures of DNA transport through a nanopore.

Authors:  Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2010-02-02       Impact factor: 7.790

8.  Presentation of large DNA molecules for analysis as nanoconfined dumbbells.

Authors:  Kristy L Kounovsky-Shafer; Juan P Hernández-Ortiz; Kyubong Jo; Theo Odijk; Juan J de Pablo; David C Schwartz
Journal:  Macromolecules       Date:  2013-10-22       Impact factor: 5.985

Review 9.  The role of molecular modeling in bionanotechnology.

Authors:  Deyu Lu; Aleksei Aksimentiev; Amy Y Shih; Eduardo Cruz-Chu; Peter L Freddolino; Anton Arkhipov; Klaus Schulten
Journal:  Phys Biol       Date:  2006-02-02       Impact factor: 2.583

10.  Enzyme-modulated DNA translocation through a nanopore.

Authors:  Ajay S Panwar; M Muthukumar
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

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