Literature DB >> 23504018

Regulation of iron metabolism by Pyrococcus furiosus.

Yixuan Zhu1, Sunil Kumar, Angeli L Menon, Robert A Scott, Michael W W Adams.   

Abstract

Iron is an essential element for the hyperthermophilic archaeon Pyrococcus furiosus, and many of its iron-containing enzymes have been characterized. How iron assimilation is regulated, however, is unknown. The genome sequence contains genes encoding two putative iron-responsive transcription factors, DtxR and Fur. Global transcriptional profiles of the dtxR deletion mutant (ΔDTXR) and the parent strain under iron-sufficient and iron-limited conditions indicated that DtxR represses the expression of the genes encoding two putative iron transporters, Ftr1 and FeoAB, under iron-sufficient conditions. Under iron limitation, DtxR represses expression of the gene encoding the iron-containing enzyme aldehyde ferredoxin oxidoreductase and a putative ABC-type transporter. Analysis of the dtxR gene sequence indicated an incorrectly predicted translation start site, and the corrected full-length DtxR protein, in contrast to the truncated version, specifically bound to the promoters of ftr1 and feoAB, confirming its role as a transcription regulator. Expression of the gene encoding Ftr1 was dramatically upregulated by iron limitation, but no phenotype was observed for the ΔFTR1 deletion mutant under iron-limited conditions. The intracellular iron concentrations of ΔFTR1 and the parent strain were similar, suggesting that under the conditions tested, Ftr1 is not an essential iron transporter despite its response to iron. In contrast to DtxR, the Fur protein appears not to be a functional regulator in P. furiosus, since it did not bind to the promoters of any of the iron-regulated genes and the deletion mutant (ΔFUR) revealed no transcriptional responses to iron availability. DtxR is therefore the key iron-responsive transcriptional regulator in P. furiosus.

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Year:  2013        PMID: 23504018      PMCID: PMC3650548          DOI: 10.1128/JB.02280-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  42 in total

Review 1.  This is not your mother's repressor: the complex role of fur in pathogenesis.

Authors:  Beth M Carpenter; Jeannette M Whitmire; D Scott Merrell
Journal:  Infect Immun       Date:  2009-04-13       Impact factor: 3.441

2.  Deletion strains reveal metabolic roles for key elemental sulfur-responsive proteins in Pyrococcus furiosus.

Authors:  Stephanie L Bridger; Sonya M Clarkson; Karen Stirrett; Megan B DeBarry; Gina L Lipscomb; Gerrit J Schut; Janet Westpheling; Robert A Scott; Michael W W Adams
Journal:  J Bacteriol       Date:  2011-09-30       Impact factor: 3.490

3.  Oxidative stress protection and the repair response to hydrogen peroxide in the hyperthermophilic archaeon Pyrococcus furiosus and in related species.

Authors:  Kari R Strand; Chengjun Sun; Ting Li; Francis E Jenney; Gerrit J Schut; Michael W W Adams
Journal:  Arch Microbiol       Date:  2010-04-09       Impact factor: 2.552

4.  A novel fur- and iron-regulated small RNA, NrrF, is required for indirect fur-mediated regulation of the sdhA and sdhC genes in Neisseria meningitidis.

Authors:  J R Mellin; Sulip Goswami; Susan Grogan; Brian Tjaden; Caroline A Genco
Journal:  J Bacteriol       Date:  2007-03-09       Impact factor: 3.490

5.  The elemental sulfur-responsive protein (SipA) from the hyperthermophilic archaeon Pyrococcus furiosus is regulated by sulfide in an iron-dependent manner.

Authors:  Sonya M Clarkson; Elizabeth C Newcomer; Everett G Young; Michael W W Adams
Journal:  J Bacteriol       Date:  2010-08-27       Impact factor: 3.490

Review 6.  Hydrogen production by hyperthermophilic and extremely thermophilic bacteria and archaea: mechanisms for reductant disposal.

Authors:  Marcel R A Verhaart; Abraham A M Bielen; John van der Oost; Alfons J M Stams; Servé W M Kengen
Journal:  Environ Technol       Date:  2010 Jul-Aug       Impact factor: 3.247

7.  The Fur iron regulator-like protein is cryptic in the hyperthermophilic archaeon Thermococcus kodakaraensis.

Authors:  Hélène Louvel; Tamotsu Kanai; Haruyuki Atomi; John N Reeve
Journal:  FEMS Microbiol Lett       Date:  2009-06       Impact factor: 2.742

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Journal:  Infect Immun       Date:  2008-03-03       Impact factor: 3.441

9.  Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough.

Authors:  Kelly S Bender; Huei-Che Bill Yen; Christopher L Hemme; Zamin Yang; Zhili He; Qiang He; Jizhong Zhou; Katherine H Huang; Eric J Alm; Terry C Hazen; Adam P Arkin; Judy D Wall
Journal:  Appl Environ Microbiol       Date:  2007-07-13       Impact factor: 4.792

Review 10.  Living without Fur: the subtlety and complexity of iron-responsive gene regulation in the symbiotic bacterium Rhizobium and other alpha-proteobacteria.

Authors:  Andrew W B Johnston; Jonathan D Todd; Andrew R Curson; Sun Lei; Nefeli Nikolaidou-Katsaridou; Mikhail S Gelfand; Dmitry A Rodionov
Journal:  Biometals       Date:  2007-02-20       Impact factor: 2.949

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  8 in total

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Journal:  J Bacteriol       Date:  2014-11-17       Impact factor: 3.490

Review 2.  Global Transcriptional Programs in Archaea Share Features with the Eukaryotic Environmental Stress Response.

Authors:  Rylee K Hackley; Amy K Schmid
Journal:  J Mol Biol       Date:  2019-08-19       Impact factor: 5.469

3.  A transcription network of interlocking positive feedback loops maintains intracellular iron balance in archaea.

Authors:  Mar Martinez-Pastor; W Andrew Lancaster; Peter D Tonner; Michael W W Adams; Amy K Schmid
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4.  Detecting differential growth of microbial populations with Gaussian process regression.

Authors:  Peter D Tonner; Cynthia L Darnell; Barbara E Engelhardt; Amy K Schmid
Journal:  Genome Res       Date:  2016-11-18       Impact factor: 9.043

5.  CopR, a Global Regulator of Transcription to Maintain Copper Homeostasis in Pyrococcus furiosus.

Authors:  Felix Grünberger; Robert Reichelt; Ingrid Waege; Verena Ned; Korbinian Bronner; Marcell Kaljanac; Nina Weber; Zubeir El Ahmad; Lena Knauss; M Gregor Madej; Christine Ziegler; Dina Grohmann; Winfried Hausner
Journal:  Front Microbiol       Date:  2021-01-11       Impact factor: 5.640

6.  Genome sequencing of Pseudomonas aeruginosa strain M2 illuminates traits of an opportunistic pathogen of burn wounds.

Authors:  Victoria I Verhoeve; Jerod A Brammer; Timothy P Driscoll; Adrienne R Kambouris; David A Rasko; Alan S Cross; Joseph J Gillespie
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7.  Proteomic Analysis of Methanococcus voltae Grown in the Presence of Mineral and Nonmineral Sources of Iron and Sulfur.

Authors:  Katherine F Steward; Devon Payne; Will Kincannon; Christina Johnson; Malachi Lensing; Hunter Fausset; Brigitta Németh; Eric M Shepard; William E Broderick; Joan B Broderick; Jen Dubois; Brian Bothner
Journal:  Microbiol Spectr       Date:  2022-07-25

8.  Examining Pathways of Iron and Sulfur Acquisition, Trafficking, Deployment, and Storage in Mineral-Grown Methanogen Cells.

Authors:  Devon Payne; Eric M Shepard; Rachel L Spietz; Katherine Steward; Sue Brumfield; Mark Young; Brian Bothner; William E Broderick; Joan B Broderick; Eric S Boyd
Journal:  J Bacteriol       Date:  2021-09-08       Impact factor: 3.490

  8 in total

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