Literature DB >> 17630305

Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough.

Kelly S Bender1, Huei-Che Bill Yen, Christopher L Hemme, Zamin Yang, Zhili He, Qiang He, Jizhong Zhou, Katherine H Huang, Eric J Alm, Terry C Hazen, Adam P Arkin, Judy D Wall.   

Abstract

Previous experiments examining the transcriptional profile of the anaerobe Desulfovibrio vulgaris demonstrated up-regulation of the Fur regulon in response to various environmental stressors. To test the involvement of Fur in the growth response and transcriptional regulation of D. vulgaris, a targeted mutagenesis procedure was used for deleting the fur gene. Growth of the resulting Deltafur mutant (JW707) was not affected by iron availability, but the mutant did exhibit increased sensitivity to nitrite and osmotic stresses compared to the wild type. Transcriptional profiling of JW707 indicated that iron-bound Fur acts as a traditional repressor for ferrous iron uptake genes (feoAB) and other genes containing a predicted Fur binding site within their promoter. Despite the apparent lack of siderophore biosynthesis genes within the D. vulgaris genome, a large 12-gene operon encoding orthologs to TonB and TolQR also appeared to be repressed by iron-bound Fur. While other genes predicted to be involved in iron homeostasis were unaffected by the presence or absence of Fur, alternative expression patterns that could be interpreted as repression or activation by iron-free Fur were observed. Both the physiological and transcriptional data implicate a global regulatory role for Fur in the sulfate-reducing bacterium D. vulgaris.

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Year:  2007        PMID: 17630305      PMCID: PMC2042090          DOI: 10.1128/AEM.00276-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  71 in total

1.  Resistance to hydrogen peroxide in Helicobacter pylori: role of catalase (KatA) and Fur, and functional analysis of a novel gene product designated 'KatA-associated protein', KapA (HP0874).

Authors:  Andrew G Harris; Francis E Hinds; Anthony G Beckhouse; Tassia Kolesnikow; Stuart L Hazell
Journal:  Microbiology       Date:  2002-12       Impact factor: 2.777

2.  Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress.

Authors:  Dorothea K Thompson; Alexander S Beliaev; Carol S Giometti; Sandra L Tollaksen; Tripti Khare; Douglas P Lies; Kenneth H Nealson; Hanjo Lim; John Yates; Craig C Brandt; James M Tiedje; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2002-02       Impact factor: 4.792

3.  Characterization of three proteins containing multiple iron sites: rubrerythrin, desulfoferrodoxin, and a protein containing a six-iron cluster.

Authors:  I Moura; P Tavares; N Ravi
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

4.  High-salinity-induced iron limitation in Bacillus subtilis.

Authors:  Tamara Hoffmann; Alexandra Schütz; Margot Brosius; Andrea Völker; Uwe Völker; Erhard Bremer
Journal:  J Bacteriol       Date:  2002-02       Impact factor: 3.490

5.  Identification of a Dichelobacter nodosus ferric uptake regulator and determination of its regulatory targets.

Authors:  Dane Parker; Ruth M Kennan; Garry S Myers; Ian T Paulsen; Julian I Rood
Journal:  J Bacteriol       Date:  2005-01       Impact factor: 3.490

6.  Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach.

Authors:  Aindrila Mukhopadhyay; Zhili He; Eric J Alm; Adam P Arkin; Edward E Baidoo; Sharon C Borglin; Wenqiong Chen; Terry C Hazen; Qiang He; Hoi-Ying Holman; Katherine Huang; Rick Huang; Dominique C Joyner; Natalie Katz; Martin Keller; Paul Oeller; Alyssa Redding; Jun Sun; Judy Wall; Jing Wei; Zamin Yang; Huei-Che Yen; Jizhong Zhou; Jay D Keasling
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

Review 7.  Genomic insights into the iron uptake mechanisms of the biomining microorganism Acidithiobacillus ferrooxidans.

Authors:  Raquel Quatrini; Eugenia Jedlicki; David S Holmes
Journal:  J Ind Microbiol Biotechnol       Date:  2005-05-14       Impact factor: 3.346

Review 8.  Iron and metal regulation in bacteria.

Authors:  K Hantke
Journal:  Curr Opin Microbiol       Date:  2001-04       Impact factor: 7.934

9.  The PerR transcription factor senses H2O2 by metal-catalysed histidine oxidation.

Authors:  Jin-Won Lee; John D Helmann
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

Review 10.  Bacterial iron homeostasis.

Authors:  Simon C Andrews; Andrea K Robinson; Francisco Rodríguez-Quiñones
Journal:  FEMS Microbiol Rev       Date:  2003-06       Impact factor: 16.408

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  37 in total

1.  Effect of the deletion of qmoABC and the promoter-distal gene encoding a hypothetical protein on sulfate reduction in Desulfovibrio vulgaris Hildenborough.

Authors:  Grant M Zane; Huei-che Bill Yen; Judy D Wall
Journal:  Appl Environ Microbiol       Date:  2010-06-25       Impact factor: 4.792

2.  Mutagenesis of conserved amino acids of Helicobacter pylori fur reveals residues important for function.

Authors:  Beth M Carpenter; Hanan Gancz; Stéphane L Benoit; Sarah Evans; Cara H Olsen; Sarah L J Michel; Robert J Maier; D Scott Merrell
Journal:  J Bacteriol       Date:  2010-07-19       Impact factor: 3.490

3.  Empirical evaluation of a new method for calculating signal-to-noise ratio for microarray data analysis.

Authors:  Zhili He; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2008-03-14       Impact factor: 4.792

Review 4.  This is not your mother's repressor: the complex role of fur in pathogenesis.

Authors:  Beth M Carpenter; Jeannette M Whitmire; D Scott Merrell
Journal:  Infect Immun       Date:  2009-04-13       Impact factor: 3.441

5.  Development of a common oligonucleotide reference standard for microarray data normalization and comparison across different microbial communities.

Authors:  Yuting Liang; Zhili He; Liyou Wu; Ye Deng; Guanghe Li; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2009-12-28       Impact factor: 4.792

6.  The iron stimulon and fur regulon of Geobacter sulfurreducens and their role in energy metabolism.

Authors:  Mallory Embree; Yu Qiu; Wendy Shieu; Harish Nagarajan; Regina O'Neil; Derek Lovley; Karsten Zengler
Journal:  Appl Environ Microbiol       Date:  2014-02-28       Impact factor: 4.792

7.  Identification and characterization of novel Helicobacter pylori apo-fur-regulated target genes.

Authors:  Beth M Carpenter; Jeremy J Gilbreath; Oscar Q Pich; Ann M McKelvey; Ernest L Maynard; Zhao-Zhang Li; D Scott Merrell
Journal:  J Bacteriol       Date:  2013-10-04       Impact factor: 3.490

8.  Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris.

Authors:  Bo Wu; Feifei Liu; Aifen Zhou; Juan Li; Longfei Shu; Megan L Kempher; Xueqin Yang; Daliang Ning; Feiyan Pan; Grant M Zane; Judy D Wall; Joy D Van Nostrand; Philippe Juneau; Shouwen Chen; Qingyun Yan; Jizhong Zhou; Zhili He
Journal:  ISME J       Date:  2020-09-15       Impact factor: 10.302

9.  Deletion of the Desulfovibrio vulgaris carbon monoxide sensor invokes global changes in transcription.

Authors:  Lara Rajeev; Kristina L Hillesland; Grant M Zane; Aifen Zhou; Marcin P Joachimiak; Zhili He; Jizhong Zhou; Adam P Arkin; Judy D Wall; David A Stahl
Journal:  J Bacteriol       Date:  2012-08-17       Impact factor: 3.490

10.  Development of a markerless genetic exchange system for Desulfovibrio vulgaris Hildenborough and its use in generating a strain with increased transformation efficiency.

Authors:  Kimberly L Keller; Kelly S Bender; Judy D Wall
Journal:  Appl Environ Microbiol       Date:  2009-10-16       Impact factor: 4.792

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