Literature DB >> 23503660

A central role for TFIID in the pluripotent transcription circuitry.

W W M Pim Pijnappel1, Daniel Esch, Marijke P A Baltissen, Guangming Wu, Nikolai Mischerikow, Atze J Bergsma, Erik van der Wal, Dong Wook Han, Hermann vom Bruch, Sören Moritz, Phillip Lijnzaad, A F Maarten Altelaar, Katrin Sameith, Holm Zaehres, Albert J R Heck, Frank C P Holstege, Hans R Schöler, H T Marc Timmers.   

Abstract

Embryonic stem (ES) cells are pluripotent and characterized by open chromatin and high transcription levels, achieved through auto-regulatory and feed-forward transcription factor loops. ES-cell identity is maintained by a core of factors including Oct4 (also known as Pou5f1), Sox2, Klf4, c-Myc (OSKM) and Nanog, and forced expression of the OSKM factors can reprogram somatic cells into induced pluripotent stem cells (iPSCs) resembling ES cells. These gene-specific factors for RNA-polymerase-II-mediated transcription recruit transcriptional cofactors and chromatin regulators that control access to and activity of the basal transcription machinery on gene promoters. How the basal transcription machinery is involved in setting and maintaining the pluripotent state is unclear. Here we show that knockdown of the transcription factor IID (TFIID) complex affects the pluripotent circuitry in mouse ES cells and inhibits reprogramming of fibroblasts. TFIID subunits and the OSKM factors form a feed-forward loop to induce and maintain a stable transcription state. Notably, transient expression of TFIID subunits greatly enhanced reprogramming. These results show that TFIID is critical for transcription-factor-mediated reprogramming. We anticipate that, by creating plasticity in gene expression programs, transcription complexes such as TFIID assist reprogramming into different cellular states.

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Year:  2013        PMID: 23503660     DOI: 10.1038/nature11970

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  29 in total

Review 1.  Developmental regulation of transcription initiation: more than just changing the actors.

Authors:  Ferenc Müller; Andreas Zaucker; Làszlò Tora
Journal:  Curr Opin Genet Dev       Date:  2010-07-02       Impact factor: 5.578

2.  Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

Authors:  Michiel Vermeulen; Klaas W Mulder; Sergei Denissov; W W M Pim Pijnappel; Frederik M A van Schaik; Radhika A Varier; Marijke P A Baltissen; Henk G Stunnenberg; Matthias Mann; H Th Marc Timmers
Journal:  Cell       Date:  2007-09-20       Impact factor: 41.582

3.  SetDB1 contributes to repression of genes encoding developmental regulators and maintenance of ES cell state.

Authors:  Steve Bilodeau; Michael H Kagey; Garrett M Frampton; Peter B Rahl; Richard A Young
Journal:  Genes Dev       Date:  2009-11-01       Impact factor: 11.361

4.  Control of embryonic stem cell lineage commitment by core promoter factor, TAF3.

Authors:  Zhe Liu; Devin R Scannell; Michael B Eisen; Robert Tjian
Journal:  Cell       Date:  2011-09-02       Impact factor: 41.582

5.  The architecture of human general transcription factor TFIID core complex.

Authors:  Christoph Bieniossek; Gabor Papai; Christiane Schaffitzel; Frederic Garzoni; Maxime Chaillet; Elisabeth Scheer; Petros Papadopoulos; Laszlo Tora; Patrick Schultz; Imre Berger
Journal:  Nature       Date:  2013-01-06       Impact factor: 49.962

6.  A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

Authors:  Na-Yu Chia; Yun-Shen Chan; Bo Feng; Xinyi Lu; Yuriy L Orlov; Dimitri Moreau; Pankaj Kumar; Lin Yang; Jianming Jiang; Mei-Sheng Lau; Mikael Huss; Boon-Seng Soh; Petra Kraus; Pin Li; Thomas Lufkin; Bing Lim; Neil D Clarke; Frederic Bard; Huck-Hui Ng
Journal:  Nature       Date:  2010-10-17       Impact factor: 49.962

Review 7.  Recent advances in understanding the structure and function of general transcription factor TFIID.

Authors:  Emilie Cler; Gabor Papai; Patrick Schultz; Irwin Davidson
Journal:  Cell Mol Life Sci       Date:  2009-03-24       Impact factor: 9.261

8.  An extended transcriptional network for pluripotency of embryonic stem cells.

Authors:  Jonghwan Kim; Jianlin Chu; Xiaohua Shen; Jianlong Wang; Stuart H Orkin
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

9.  Direct cell reprogramming is a stochastic process amenable to acceleration.

Authors:  Jacob Hanna; Krishanu Saha; Bernardo Pando; Jeroen van Zon; Christopher J Lengner; Menno P Creyghton; Alexander van Oudenaarden; Rudolf Jaenisch
Journal:  Nature       Date:  2009-11-08       Impact factor: 49.962

Review 10.  Mammalian RNA polymerase II core promoters: insights from genome-wide studies.

Authors:  Albin Sandelin; Piero Carninci; Boris Lenhard; Jasmina Ponjavic; Yoshihide Hayashizaki; David A Hume
Journal:  Nat Rev Genet       Date:  2007-05-08       Impact factor: 53.242

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  42 in total

1.  TAF10 Interacts with the GATA1 Transcription Factor and Controls Mouse Erythropoiesis.

Authors:  Petros Papadopoulos; Laura Gutiérrez; Jeroen Demmers; Elisabeth Scheer; Farzin Pourfarzad; Dimitris N Papageorgiou; Elena Karkoulia; John Strouboulis; Harmen J G van de Werken; Reinier van der Linden; Peter Vandenberghe; Dick H W Dekkers; Sjaak Philipsen; Frank Grosveld; Làszlò Tora
Journal:  Mol Cell Biol       Date:  2015-04-13       Impact factor: 4.272

Review 2.  Toward pluripotency by reprogramming: mechanisms and application.

Authors:  Tao Wang; Stephen T Warren; Peng Jin
Journal:  Protein Cell       Date:  2013-11       Impact factor: 14.870

3.  Processing the complexities of transcription.

Authors:  Richard N Freiman
Journal:  Dev Cell       Date:  2013-10-28       Impact factor: 12.270

4.  Functional and mechanistic studies of XPC DNA-repair complex as transcriptional coactivator in embryonic stem cells.

Authors:  Claudia Cattoglio; Elisa T Zhang; Ivan Grubisic; Kunitoshi Chiba; Yick W Fong; Robert Tjian
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-21       Impact factor: 11.205

5.  Stem cells: TFIID promotes pluripotency.

Authors:  Kim Baumann
Journal:  Nat Rev Mol Cell Biol       Date:  2013-04-10       Impact factor: 94.444

6.  Understanding impediments to cellular conversion to pluripotency by assessing the earliest events in ectopic transcription factor binding to the genome.

Authors:  Abdenour Soufi; Kenneth S Zaret
Journal:  Cell Cycle       Date:  2013-04-19       Impact factor: 4.534

Review 7.  Molecular control of induced pluripotency.

Authors:  Thorold W Theunissen; Rudolf Jaenisch
Journal:  Cell Stem Cell       Date:  2014-06-05       Impact factor: 24.633

8.  C/EBPα creates elite cells for iPSC reprogramming by upregulating Klf4 and increasing the levels of Lsd1 and Brd4.

Authors:  Bruno Di Stefano; Samuel Collombet; Janus Schou Jakobsen; Michael Wierer; Jose Luis Sardina; Andreas Lackner; Ralph Stadhouders; Carolina Segura-Morales; Mirko Francesconi; Francesco Limone; Matthias Mann; Bo Porse; Denis Thieffry; Thomas Graf
Journal:  Nat Cell Biol       Date:  2016-03-14       Impact factor: 28.824

Review 9.  Regulatory factors of induced pluripotency: current status.

Authors:  Wei Zhao; Bo Ning; Chen Qian
Journal:  Stem Cell Investig       Date:  2014-07-22

Review 10.  Mechanisms for enhancing cellular reprogramming.

Authors:  Abdenour Soufi
Journal:  Curr Opin Genet Dev       Date:  2014-03-04       Impact factor: 5.578

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