Literature DB >> 19308322

Recent advances in understanding the structure and function of general transcription factor TFIID.

Emilie Cler1, Gabor Papai, Patrick Schultz, Irwin Davidson.   

Abstract

The general transcription factor TFIID is a macromolecular complex comprising the TATA-binding protein (TBP) and a set of 13-14 TBP associated factors (TAFs). This review discusses biochemical, genetic and electron microscopic data acquired over the past years that provide a model for the composition, organisation and assembly of TFIID. We also revisit ideas on how TFIID is recruited to the promoters of active and possibly repressed genes. Recent observations show that recognition of acetylated and methylated histone residues by structural domains in several TAFs plays an important role. Finally, we highlight several genetic studies suggesting that TFIID is required for initiation of transcription, but not for maintaining transcription once a promoter is in an active state.

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Year:  2009        PMID: 19308322     DOI: 10.1007/s00018-009-0009-3

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  90 in total

Review 1.  Structure and function of the TFIID complex.

Authors:  Oranart Matangkasombut; Roy Auty; Stephen Buratowski
Journal:  Adv Protein Chem       Date:  2004

2.  Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

Authors:  Michiel Vermeulen; Klaas W Mulder; Sergei Denissov; W W M Pim Pijnappel; Frederik M A van Schaik; Radhika A Varier; Marijke P A Baltissen; Henk G Stunnenberg; Matthias Mann; H Th Marc Timmers
Journal:  Cell       Date:  2007-09-20       Impact factor: 41.582

3.  Dominant and redundant functions of TFIID involved in the regulation of hepatic genes.

Authors:  Antonis Tatarakis; Thanasis Margaritis; Celia Pilar Martinez-Jimenez; Antigone Kouskouti; William S Mohan; Anna Haroniti; Dimitris Kafetzopoulos; Làszlò Tora; Iannis Talianidis
Journal:  Mol Cell       Date:  2008-08-22       Impact factor: 17.970

Review 4.  Crosstalk among Histone Modifications.

Authors:  Tamaki Suganuma; Jerry L Workman
Journal:  Cell       Date:  2008-11-14       Impact factor: 41.582

5.  Assembly of recombinant TFIID reveals differential coactivator requirements for distinct transcriptional activators.

Authors:  J L Chen; L D Attardi; C P Verrijzer; K Yokomori; R Tjian
Journal:  Cell       Date:  1994-10-07       Impact factor: 41.582

6.  The TAF(II)250 subunit of TFIID has histone acetyltransferase activity.

Authors:  C A Mizzen; X J Yang; T Kokubo; J E Brownell; A J Bannister; T Owen-Hughes; J Workman; L Wang; S L Berger; T Kouzarides; Y Nakatani; C D Allis
Journal:  Cell       Date:  1996-12-27       Impact factor: 41.582

7.  TAF10 (TAF(II)30) is necessary for TFIID stability and early embryogenesis in mice.

Authors:  William S Mohan; Elisabeth Scheer; Olivia Wendling; Daniel Metzger; Làszlò Tora
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

8.  Immunopurification of yeast TATA-binding protein and associated factors. Presence of transcription factor IIIB transcriptional activity.

Authors:  D Poon; P A Weil
Journal:  J Biol Chem       Date:  1993-07-25       Impact factor: 5.157

9.  Direct recognition of initiator elements by a component of the transcription factor IID complex.

Authors:  J Kaufmann; S T Smale
Journal:  Genes Dev       Date:  1994-04-01       Impact factor: 11.361

Review 10.  Mammalian RNA polymerase II core promoters: insights from genome-wide studies.

Authors:  Albin Sandelin; Piero Carninci; Boris Lenhard; Jasmina Ponjavic; Yoshihide Hayashizaki; David A Hume
Journal:  Nat Rev Genet       Date:  2007-05-08       Impact factor: 53.242

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  49 in total

Review 1.  ATAC-king the complexity of SAGA during evolution.

Authors:  Gianpiero Spedale; H Th Marc Timmers; W W M Pim Pijnappel
Journal:  Genes Dev       Date:  2012-03-15       Impact factor: 11.361

2.  The general transcription factor TAF7 is essential for embryonic development but not essential for the survival or differentiation of mature T cells.

Authors:  Anne Gegonne; Xuguang Tai; Jinghui Zhang; Gang Wu; Jianjian Zhu; Aki Yoshimoto; Jeffrey Hanson; Constance Cultraro; Qing-Rong Chen; Terry Guinter; Zhihui Yang; Karen Hathcock; Alfred Singer; Jaime Rodriguez-Canales; Lino Tessarollo; Susan Mackem; Daoud Meerzaman; Ken Buetow; Dinah S Singer
Journal:  Mol Cell Biol       Date:  2012-03-12       Impact factor: 4.272

3.  TFIID TAF6-TAF9 complex formation involves the HEAT repeat-containing C-terminal domain of TAF6 and is modulated by TAF5 protein.

Authors:  Elisabeth Scheer; Frédéric Delbac; Laszlo Tora; Dino Moras; Christophe Romier
Journal:  J Biol Chem       Date:  2012-06-13       Impact factor: 5.157

4.  WD40 repeat propellers define a ubiquitin-binding domain that regulates turnover of F box proteins.

Authors:  Natasha Pashkova; Lokesh Gakhar; Stanley C Winistorfer; Liping Yu; S Ramaswamy; Robert C Piper
Journal:  Mol Cell       Date:  2010-11-12       Impact factor: 17.970

Review 5.  Structural insights into transcription initiation by RNA polymerase II.

Authors:  Sebastian Grünberg; Steven Hahn
Journal:  Trends Biochem Sci       Date:  2013-10-11       Impact factor: 13.807

6.  Direct transactivator-transcription factor IID (TFIID) contacts drive yeast ribosomal protein gene transcription.

Authors:  Justin H Layer; Scott G Miller; P Anthony Weil
Journal:  J Biol Chem       Date:  2010-02-26       Impact factor: 5.157

Review 7.  Structural basis of transcription initiation by RNA polymerase II.

Authors:  Sarah Sainsbury; Carrie Bernecky; Patrick Cramer
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-18       Impact factor: 94.444

8.  The YEATS domain of Taf14 in Saccharomyces cerevisiae has a negative impact on cell growth.

Authors:  Julia M Schulze; Caroline M Kane; Ana Ruiz-Manzano
Journal:  Mol Genet Genomics       Date:  2010-02-24       Impact factor: 3.291

9.  Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters.

Authors:  Kazushige Ohtsuki; Koji Kasahara; Katsuhiko Shirahige; Tetsuro Kokubo
Journal:  Nucleic Acids Res       Date:  2009-12-21       Impact factor: 16.971

10.  Quantitative mass spectrometry of TATA binding protein-containing complexes and subunit phosphorylations during the cell cycle.

Authors:  Wwm Pim Pijnappel; Annemieke Kolkman; Marijke Pa Baltissen; Albert Jr Heck; Ht Marc Timmers
Journal:  Proteome Sci       Date:  2009-12-24       Impact factor: 2.480

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