Literature DB >> 24607881

Mechanisms for enhancing cellular reprogramming.

Abdenour Soufi1.   

Abstract

During development, the genome adopts specific chromatin states to establish and maintain functionally distinct cell types in a well-controlled environment. A select group of transcription factors have the ability to drive the transition of the genome from a pluripotent to a more specialized chromatin state. The same set of factors can be used as reprogramming factors to reset the already established chromatin state back to pluripotency or directly to an alternative cell type. However, under the suboptimal reprogramming conditions, these factors fall short in guiding the majority of cells to their new fate. In this review, we visit the recent findings addressing the manipulation of chromatin structure to enhance the performance of transcription factors in reprogramming. The main emphasis is on the mechanisms underlying the conversion of somatic cells to pluripotency using OSKM. This review is intended to highlight the windows of opportunities for developing mechanistically based approaches to replace the phenotypically guided methods currently employed in reprogramming, in an attempt to move the field of cell conversion towards using next generation technologies.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24607881      PMCID: PMC4109306          DOI: 10.1016/j.gde.2013.12.007

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  104 in total

1.  Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA.

Authors:  Takashi Sekiya; Uma M Muthurajan; Karolin Luger; Alexei V Tulin; Kenneth S Zaret
Journal:  Genes Dev       Date:  2009-04-01       Impact factor: 11.361

2.  A p53-mediated DNA damage response limits reprogramming to ensure iPS cell genomic integrity.

Authors:  Rosa M Marión; Katerina Strati; Han Li; Matilde Murga; Raquel Blanco; Sagrario Ortega; Oscar Fernandez-Capetillo; Manuel Serrano; Maria A Blasco
Journal:  Nature       Date:  2009-08-09       Impact factor: 49.962

3.  Suppression of induced pluripotent stem cell generation by the p53-p21 pathway.

Authors:  Hyenjong Hong; Kazutoshi Takahashi; Tomoko Ichisaka; Takashi Aoi; Osami Kanagawa; Masato Nakagawa; Keisuke Okita; Shinya Yamanaka
Journal:  Nature       Date:  2009-08-09       Impact factor: 49.962

4.  Reprogramming of murine fibroblasts to induced pluripotent stem cells with chemical complementation of Klf4.

Authors:  Costas A Lyssiotis; Ruth K Foreman; Judith Staerk; Michael Garcia; Divya Mathur; Styliani Markoulaki; Jacob Hanna; Luke L Lairson; Bradley D Charette; Laure C Bouchez; Michael Bollong; Conrad Kunick; Achim Brinker; Charles Y Cho; Peter G Schultz; Rudolf Jaenisch
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-15       Impact factor: 11.205

5.  Linking the p53 tumour suppressor pathway to somatic cell reprogramming.

Authors:  Teruhisa Kawamura; Jotaro Suzuki; Yunyuan V Wang; Sergio Menendez; Laura Batlle Morera; Angel Raya; Geoffrey M Wahl; Juan Carlos Izpisúa Belmonte
Journal:  Nature       Date:  2009-08-09       Impact factor: 49.962

6.  Tgfbeta signal inhibition cooperates in the induction of iPSCs and replaces Sox2 and cMyc.

Authors:  Nimet Maherali; Konrad Hochedlinger
Journal:  Curr Biol       Date:  2009-09-17       Impact factor: 10.834

7.  Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb.

Authors:  Bo Feng; Jianming Jiang; Petra Kraus; Jia-Hui Ng; Jian-Chien Dominic Heng; Yun-Shen Chan; Lai-Ping Yaw; Weiwei Zhang; Yuin-Han Loh; Jianyong Han; Vinsensius B Vega; Valere Cacheux-Rataboul; Bing Lim; Thomas Lufkin; Huck-Hui Ng
Journal:  Nat Cell Biol       Date:  2009-01-11       Impact factor: 28.824

8.  A small-molecule inhibitor of tgf-Beta signaling replaces sox2 in reprogramming by inducing nanog.

Authors:  Justin K Ichida; Joel Blanchard; Kelvin Lam; Esther Y Son; Julia E Chung; Dieter Egli; Kyle M Loh; Ava C Carter; Francesco P Di Giorgio; Kathryn Koszka; Danwei Huangfu; Hidenori Akutsu; David R Liu; Lee L Rubin; Kevin Eggan
Journal:  Cell Stem Cell       Date:  2009-10-08       Impact factor: 24.633

9.  DZNep is a global histone methylation inhibitor that reactivates developmental genes not silenced by DNA methylation.

Authors:  Tina Branscombe Miranda; Connie C Cortez; Christine B Yoo; Gangning Liang; Masanobu Abe; Theresa K Kelly; Victor E Marquez; Peter A Jones
Journal:  Mol Cancer Ther       Date:  2009-06-09       Impact factor: 6.261

10.  Stoichiometric and temporal requirements of Oct4, Sox2, Klf4, and c-Myc expression for efficient human iPSC induction and differentiation.

Authors:  Eirini P Papapetrou; Mark J Tomishima; Stuart M Chambers; Yvonne Mica; Evan Reed; Jayanthi Menon; Viviane Tabar; Qianxing Mo; Lorenz Studer; Michel Sadelain
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-23       Impact factor: 11.205

View more
  7 in total

1.  Injury Induces Endogenous Reprogramming and Dedifferentiation of Neuronal Progenitors to Multipotency.

Authors:  Brian Lin; Julie H Coleman; Jesse N Peterson; Matthew J Zunitch; Woochan Jang; Daniel B Herrick; James E Schwob
Journal:  Cell Stem Cell       Date:  2017-11-22       Impact factor: 24.633

2.  Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming.

Authors:  Abdenour Soufi; Meilin Fernandez Garcia; Artur Jaroszewicz; Nebiyu Osman; Matteo Pellegrini; Kenneth S Zaret
Journal:  Cell       Date:  2015-04-16       Impact factor: 41.582

3.  Gene expression of OCT4, SOX2, KLF4 and MYC (OSKM) induced pluripotent stem cells: identification for potential mechanisms.

Authors:  Yanning Cai; Xianhua Dai; Qianhua Zhang; Zhiming Dai
Journal:  Diagn Pathol       Date:  2015-04-24       Impact factor: 2.644

Review 4.  Reprogramming cells with synthetic proteins.

Authors:  Xiaoxiao Yang; Vikas Malik; Ralf Jauch
Journal:  Asian J Androl       Date:  2015 May-Jun       Impact factor: 3.285

Review 5.  Rationale and Methodology of Reprogramming for Generation of Induced Pluripotent Stem Cells and Induced Neural Progenitor Cells.

Authors:  Zuojun Tian; Fuzheng Guo; Sangita Biswas; Wenbin Deng
Journal:  Int J Mol Sci       Date:  2016-04-20       Impact factor: 5.923

Review 6.  Cellular Reprogramming-A Model for Melanoma Cellular Plasticity.

Authors:  Karol Granados; Juliane Poelchen; Daniel Novak; Jochen Utikal
Journal:  Int J Mol Sci       Date:  2020-11-05       Impact factor: 5.923

7.  Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation.

Authors:  Yujia Sun; Chung-Yi Nien; Kai Chen; Hsiao-Yun Liu; Jeff Johnston; Julia Zeitlinger; Christine Rushlow
Journal:  Genome Res       Date:  2015-09-02       Impact factor: 9.043

  7 in total

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