Literature DB >> 23476518

5-Amino-6-methyl-quinolin-1-ium hydrogen malonate-malonic acid (2/1).

Kaliyaperumal Thanigaimani1, Nuridayanti Che Khalib, Suhana Arshad, Ibrahim Abdul Razak.   

Abstract

The asymmetric unit of the title compound, 2C10H11N2(+)·2C3H3O4(-)·C3H4O4, consists of one 5-amino-6-methyl-quinolin-1-ium cation, one hydrogen malonate (2-carb-oxy-acetate) anion and one-half mol-ecule of malonic acid which lies on a twofold rotation axis. The quinoline ring system is essentially planar, with a maximum deviation of 0.062 (2) Å for all non-H atoms. In the anion, an intra-molecular O-H⋯O hydrogen bond generates an S(6) ring. In the crystal, the components are linked via N-H⋯O and O-H⋯O hydrogen bonds into layers parallel to the ac plane. The crystal structure also features weak C-H⋯O hydrogen bonds and a π-π stacking inter-action with a centroid-centroid distance of 3.8189 (10) Å.

Entities:  

Year:  2013        PMID: 23476518      PMCID: PMC3588490          DOI: 10.1107/S1600536813002547

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and the biological activity of quinoline derivatives, see: Sasaki et al. (1998 ▶); Reux et al. (2009 ▶); Morimoto et al. (1991 ▶); Markees et al. (1970 ▶). For related structures, see: Thanigaimani et al. (2013a ▶,b ▶); Loh et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

2C10H11N2 +·2C3H3O4 −·C3H4O4 M = 628.59 Monoclinic, a = 24.701 (2) Å b = 4.8530 (4) Å c = 25.063 (2) Å β = 95.321 (3)° V = 2991.4 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 297 K 0.35 × 0.24 × 0.09 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.962, T max = 0.990 25870 measured reflections 3835 independent reflections 2644 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.130 S = 1.03 3835 reflections 225 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813002547/is5233sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813002547/is5233Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813002547/is5233Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C10H11N2+·2C3H3O4·C3H4O4F(000) = 1320
Mr = 628.59Dx = 1.396 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 5351 reflections
a = 24.701 (2) Åθ = 3.3–25.6°
b = 4.8530 (4) ŵ = 0.11 mm1
c = 25.063 (2) ÅT = 297 K
β = 95.321 (3)°Block, orange
V = 2991.4 (4) Å30.35 × 0.24 × 0.09 mm
Z = 4
Bruker SMART APEXII DUO CCD area-detector diffractometer3835 independent reflections
Radiation source: fine-focus sealed tube2644 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
φ and ω scansθmax = 28.6°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −31→32
Tmin = 0.962, Tmax = 0.990k = −6→6
25870 measured reflectionsl = −33→33
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0604P)2 + 1.0717P] where P = (Fo2 + 2Fc2)/3
3835 reflections(Δ/σ)max < 0.001
225 parametersΔρmax = 0.18 e Å3
1 restraintΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.13586 (5)0.9772 (3)0.04300 (6)0.0754 (4)
O2−0.07247 (5)0.7142 (3)0.01501 (6)0.0746 (4)
O30.04562 (4)1.0469 (3)0.11941 (5)0.0646 (3)
O40.02278 (5)0.7599 (3)0.05274 (5)0.0690 (4)
O5−0.04221 (5)0.5560 (3)0.16694 (5)0.0732 (4)
O60.03881 (5)0.3951 (3)0.19696 (5)0.0709 (4)
N10.14556 (5)0.8482 (3)0.09860 (5)0.0512 (3)
N20.34061 (6)0.9024 (4)0.12530 (7)0.0632 (4)
C10.14687 (6)0.6550 (4)0.06193 (7)0.0565 (4)
H1A0.11440.58440.04560.068*
C20.19582 (6)0.5552 (4)0.04724 (7)0.0565 (4)
H2A0.19660.41720.02160.068*
C30.24305 (6)0.6638 (3)0.07126 (6)0.0513 (4)
H3A0.27620.59970.06140.062*
C40.24260 (5)0.8699 (3)0.11047 (6)0.0444 (3)
C50.29079 (6)0.9876 (3)0.13779 (6)0.0475 (3)
C60.28603 (6)1.1839 (4)0.17747 (6)0.0535 (4)
C70.23408 (7)1.2695 (4)0.18874 (7)0.0577 (4)
H7A0.23141.40350.21490.069*
C80.18716 (6)1.1662 (4)0.16329 (6)0.0546 (4)
H8A0.15341.22920.17160.066*
C90.19147 (6)0.9639 (3)0.12455 (6)0.0456 (3)
C100.33584 (8)1.3009 (5)0.20828 (8)0.0752 (6)
H10A0.35881.38320.18380.113*
H10B0.35531.15610.22780.113*
H10C0.32531.43810.23290.113*
C11−0.08862 (6)0.9118 (3)0.04500 (6)0.0519 (4)
C12−0.04600 (6)1.0564 (4)0.08107 (7)0.0542 (4)
H12A−0.05781.05640.11690.065*
H12B−0.04491.24700.06960.065*
C130.01154 (6)0.9451 (3)0.08464 (7)0.0518 (4)
C14−0.00419 (6)0.5507 (3)0.20023 (6)0.0508 (4)
C150.00000.7256 (5)0.25000.0577 (6)
H15A−0.03180.84310.24970.069*
H1N20.3459 (8)0.782 (5)0.0986 (8)0.076 (6)*
H1N10.1100 (8)0.914 (4)0.1093 (8)0.076 (6)*
H2N20.3720 (10)0.970 (5)0.1407 (9)0.087 (7)*
H1O2−0.0377 (4)0.708 (5)0.0215 (9)0.101 (8)*
H1060.0359 (11)0.277 (6)0.1633 (11)0.118 (9)*
U11U22U33U12U13U23
O10.0428 (6)0.0887 (9)0.0941 (9)0.0145 (6)0.0024 (6)−0.0245 (8)
O20.0540 (7)0.0738 (8)0.0968 (10)0.0054 (6)0.0106 (7)−0.0355 (7)
O30.0419 (6)0.0825 (8)0.0691 (7)0.0156 (6)0.0030 (5)−0.0146 (6)
O40.0498 (6)0.0737 (8)0.0849 (8)0.0168 (6)0.0147 (6)−0.0213 (7)
O50.0489 (6)0.0961 (10)0.0726 (8)0.0098 (6)−0.0045 (6)−0.0194 (7)
O60.0606 (7)0.0848 (9)0.0654 (8)0.0233 (7)−0.0046 (6)−0.0097 (7)
N10.0367 (6)0.0633 (8)0.0538 (7)0.0116 (6)0.0049 (5)0.0025 (6)
N20.0379 (7)0.0767 (10)0.0755 (10)0.0060 (7)0.0072 (7)−0.0156 (8)
C10.0425 (8)0.0668 (10)0.0592 (9)0.0066 (7)−0.0009 (7)0.0000 (8)
C20.0486 (8)0.0628 (10)0.0578 (9)0.0086 (7)0.0039 (7)−0.0074 (8)
C30.0419 (8)0.0590 (9)0.0537 (9)0.0118 (7)0.0084 (6)−0.0010 (7)
C40.0382 (7)0.0500 (8)0.0457 (7)0.0089 (6)0.0080 (6)0.0074 (6)
C50.0400 (7)0.0524 (8)0.0507 (8)0.0071 (6)0.0076 (6)0.0063 (7)
C60.0490 (8)0.0601 (9)0.0522 (9)0.0032 (7)0.0084 (6)0.0002 (7)
C70.0597 (10)0.0624 (10)0.0525 (9)0.0095 (8)0.0131 (7)−0.0059 (8)
C80.0469 (8)0.0654 (10)0.0530 (9)0.0148 (7)0.0127 (7)0.0013 (7)
C90.0380 (7)0.0535 (8)0.0457 (8)0.0103 (6)0.0068 (6)0.0090 (6)
C100.0613 (11)0.0880 (14)0.0763 (12)−0.0041 (10)0.0059 (9)−0.0216 (11)
C110.0458 (8)0.0521 (8)0.0588 (9)0.0081 (7)0.0097 (7)−0.0027 (7)
C120.0461 (8)0.0580 (9)0.0580 (9)0.0166 (7)0.0023 (7)−0.0075 (7)
C130.0422 (8)0.0588 (9)0.0555 (9)0.0132 (7)0.0104 (7)0.0015 (7)
C140.0442 (8)0.0558 (9)0.0529 (8)0.0000 (7)0.0066 (6)0.0047 (7)
C150.0634 (14)0.0508 (12)0.0581 (13)0.0000.0020 (11)0.000
O1—C111.2060 (18)C4—C91.4178 (19)
O2—C111.3037 (19)C4—C51.436 (2)
O2—H1O20.859 (10)C5—C61.390 (2)
O3—C131.2556 (19)C6—C71.402 (2)
O4—C131.2511 (19)C6—C101.502 (2)
O5—C141.1973 (19)C7—C81.365 (2)
O6—C141.3119 (19)C7—H7A0.9300
O6—H1061.02 (3)C8—C91.392 (2)
N1—C11.316 (2)C8—H8A0.9300
N1—C91.374 (2)C10—H10A0.9600
N1—H1N10.99 (2)C10—H10B0.9600
N2—C51.3619 (19)C10—H10C0.9600
N2—H1N20.91 (2)C11—C121.497 (2)
N2—H2N20.90 (2)C12—C131.515 (2)
C1—C21.384 (2)C12—H12A0.9700
C1—H1A0.9300C12—H12B0.9700
C2—C31.368 (2)C14—C151.504 (2)
C2—H2A0.9300C15—C14i1.505 (2)
C3—C41.403 (2)C15—H15A0.9700
C3—H3A0.9300
C11—O2—H1O2105.8 (17)C7—C8—H8A121.0
C14—O6—H106112.4 (15)C9—C8—H8A121.0
C1—N1—C9123.32 (13)N1—C9—C8120.35 (13)
C1—N1—H1N1119.8 (12)N1—C9—C4117.77 (14)
C9—N1—H1N1116.9 (12)C8—C9—C4121.88 (14)
C5—N2—H1N2124.0 (13)C6—C10—H10A109.5
C5—N2—H2N2123.7 (15)C6—C10—H10B109.5
H1N2—N2—H2N2112.1 (19)H10A—C10—H10B109.5
N1—C1—C2120.93 (15)C6—C10—H10C109.5
N1—C1—H1A119.5H10A—C10—H10C109.5
C2—C1—H1A119.5H10B—C10—H10C109.5
C3—C2—C1118.60 (16)O1—C11—O2121.09 (16)
C3—C2—H2A120.7O1—C11—C12121.68 (14)
C1—C2—H2A120.7O2—C11—C12117.22 (13)
C2—C3—C4121.41 (14)C11—C12—C13118.13 (14)
C2—C3—H3A119.3C11—C12—H12A107.8
C4—C3—H3A119.3C13—C12—H12A107.8
C3—C4—C9117.96 (13)C11—C12—H12B107.8
C3—C4—C5123.90 (13)C13—C12—H12B107.8
C9—C4—C5118.13 (14)H12A—C12—H12B107.1
N2—C5—C6120.70 (15)O4—C13—O3123.50 (14)
N2—C5—C4119.77 (15)O4—C13—C12118.75 (15)
C6—C5—C4119.52 (13)O3—C13—C12117.74 (14)
C5—C6—C7119.12 (15)O5—C14—O6123.80 (16)
C5—C6—C10120.49 (15)O5—C14—C15123.69 (14)
C7—C6—C10120.39 (16)O6—C14—C15112.50 (13)
C8—C7—C6123.39 (16)C14—C15—C14i111.30 (19)
C8—C7—H7A118.3C14—C15—H15A109.4
C6—C7—H7A118.3C14i—C15—H15A109.4
C7—C8—C9117.92 (14)
C9—N1—C1—C20.1 (3)C6—C7—C8—C90.6 (3)
N1—C1—C2—C3−0.7 (3)C1—N1—C9—C8−179.50 (15)
C1—C2—C3—C40.7 (3)C1—N1—C9—C40.5 (2)
C2—C3—C4—C9−0.2 (2)C7—C8—C9—N1178.46 (15)
C2—C3—C4—C5178.70 (15)C7—C8—C9—C4−1.5 (2)
C3—C4—C5—N21.1 (2)C3—C4—C9—N1−0.4 (2)
C9—C4—C5—N2−179.97 (14)C5—C4—C9—N1−179.35 (13)
C3—C4—C5—C6−177.67 (14)C3—C4—C9—C8179.55 (14)
C9—C4—C5—C61.2 (2)C5—C4—C9—C80.6 (2)
N2—C5—C6—C7179.13 (16)O1—C11—C12—C13174.80 (16)
C4—C5—C6—C7−2.1 (2)O2—C11—C12—C13−6.3 (2)
N2—C5—C6—C10−1.5 (3)C11—C12—C13—O48.8 (2)
C4—C5—C6—C10177.31 (16)C11—C12—C13—O3−171.96 (15)
C5—C6—C7—C81.2 (3)O5—C14—C15—C14i119.16 (18)
C10—C6—C7—C8−178.19 (18)O6—C14—C15—C14i−61.88 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O31.00 (2)1.76 (2)2.7450 (17)172.3 (18)
O2—H1O2···O40.86 (1)1.64 (1)2.4630 (18)159 (2)
C1—H1A···O40.932.443.095 (2)127
N2—H1N2···O1ii0.91 (2)2.11 (2)3.012 (2)173.4 (18)
N2—H2N2···O5iii0.90 (2)2.20 (2)3.076 (2)166 (2)
O6—H106···O3iv1.02 (3)1.60 (3)2.5927 (19)164 (2)
C1—H1A···O2v0.932.283.106 (2)148
C3—H3A···O1ii0.932.343.2648 (19)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯O31.00 (2)1.76 (2)2.7450 (17)172.3 (18)
O2—H1O2⋯O40.86 (1)1.64 (1)2.4630 (18)159 (2)
C1—H1A⋯O40.932.443.095 (2)127
N2—H1N2⋯O1i 0.91 (2)2.11 (2)3.012 (2)173.4 (18)
N2—H2N2⋯O5ii 0.90 (2)2.20 (2)3.076 (2)166 (2)
O6—H106⋯O3iii 1.02 (3)1.60 (3)2.5927 (19)164 (2)
C1—H1A⋯O2iv 0.932.283.106 (2)148
C3—H3A⋯O1i 0.932.343.2648 (19)174

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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5.  8-Hy-droxy-5,7-dimethyl-quinolin-1-ium hydrogen sulfate.

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6.  8-Hy-droxy-5,7-dimethyl-quinolin-1-ium chloride dihydrate.

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