| Literature DB >> 23476518 |
Kaliyaperumal Thanigaimani1, Nuridayanti Che Khalib, Suhana Arshad, Ibrahim Abdul Razak.
Abstract
The asymmetric unit of the title compound, 2C10H11N2(+)·2C3H3O4(-)·C3H4O4, consists of one 5-amino-6-methyl-quinolin-1-ium cation, one hydrogen malonate (2-carb-oxy-acetate) anion and one-half mol-ecule of malonic acid which lies on a twofold rotation axis. The quinoline ring system is essentially planar, with a maximum deviation of 0.062 (2) Å for all non-H atoms. In the anion, an intra-molecular O-H⋯O hydrogen bond generates an S(6) ring. In the crystal, the components are linked via N-H⋯O and O-H⋯O hydrogen bonds into layers parallel to the ac plane. The crystal structure also features weak C-H⋯O hydrogen bonds and a π-π stacking inter-action with a centroid-centroid distance of 3.8189 (10) Å.Entities:
Year: 2013 PMID: 23476518 PMCID: PMC3588490 DOI: 10.1107/S1600536813002547
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C10H11N2+·2C3H3O4−·C3H4O4 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 5351 reflections |
| θ = 3.3–25.6° | |
| µ = 0.11 mm−1 | |
| β = 95.321 (3)° | Block, orange |
| 0.35 × 0.24 × 0.09 mm | |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 3835 independent reflections |
| Radiation source: fine-focus sealed tube | 2644 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.6°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 25870 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3835 reflections | (Δ/σ)max < 0.001 |
| 225 parameters | Δρmax = 0.18 e Å−3 |
| 1 restraint | Δρmin = −0.20 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.13586 (5) | 0.9772 (3) | 0.04300 (6) | 0.0754 (4) | |
| O2 | −0.07247 (5) | 0.7142 (3) | 0.01501 (6) | 0.0746 (4) | |
| O3 | 0.04562 (4) | 1.0469 (3) | 0.11941 (5) | 0.0646 (3) | |
| O4 | 0.02278 (5) | 0.7599 (3) | 0.05274 (5) | 0.0690 (4) | |
| O5 | −0.04221 (5) | 0.5560 (3) | 0.16694 (5) | 0.0732 (4) | |
| O6 | 0.03881 (5) | 0.3951 (3) | 0.19696 (5) | 0.0709 (4) | |
| N1 | 0.14556 (5) | 0.8482 (3) | 0.09860 (5) | 0.0512 (3) | |
| N2 | 0.34061 (6) | 0.9024 (4) | 0.12530 (7) | 0.0632 (4) | |
| C1 | 0.14687 (6) | 0.6550 (4) | 0.06193 (7) | 0.0565 (4) | |
| H1A | 0.1144 | 0.5844 | 0.0456 | 0.068* | |
| C2 | 0.19582 (6) | 0.5552 (4) | 0.04724 (7) | 0.0565 (4) | |
| H2A | 0.1966 | 0.4172 | 0.0216 | 0.068* | |
| C3 | 0.24305 (6) | 0.6638 (3) | 0.07126 (6) | 0.0513 (4) | |
| H3A | 0.2762 | 0.5997 | 0.0614 | 0.062* | |
| C4 | 0.24260 (5) | 0.8699 (3) | 0.11047 (6) | 0.0444 (3) | |
| C5 | 0.29079 (6) | 0.9876 (3) | 0.13779 (6) | 0.0475 (3) | |
| C6 | 0.28603 (6) | 1.1839 (4) | 0.17747 (6) | 0.0535 (4) | |
| C7 | 0.23408 (7) | 1.2695 (4) | 0.18874 (7) | 0.0577 (4) | |
| H7A | 0.2314 | 1.4035 | 0.2149 | 0.069* | |
| C8 | 0.18716 (6) | 1.1662 (4) | 0.16329 (6) | 0.0546 (4) | |
| H8A | 0.1534 | 1.2292 | 0.1716 | 0.066* | |
| C9 | 0.19147 (6) | 0.9639 (3) | 0.12455 (6) | 0.0456 (3) | |
| C10 | 0.33584 (8) | 1.3009 (5) | 0.20828 (8) | 0.0752 (6) | |
| H10A | 0.3588 | 1.3832 | 0.1838 | 0.113* | |
| H10B | 0.3553 | 1.1561 | 0.2278 | 0.113* | |
| H10C | 0.3253 | 1.4381 | 0.2329 | 0.113* | |
| C11 | −0.08862 (6) | 0.9118 (3) | 0.04500 (6) | 0.0519 (4) | |
| C12 | −0.04600 (6) | 1.0564 (4) | 0.08107 (7) | 0.0542 (4) | |
| H12A | −0.0578 | 1.0564 | 0.1169 | 0.065* | |
| H12B | −0.0449 | 1.2470 | 0.0696 | 0.065* | |
| C13 | 0.01154 (6) | 0.9451 (3) | 0.08464 (7) | 0.0518 (4) | |
| C14 | −0.00419 (6) | 0.5507 (3) | 0.20023 (6) | 0.0508 (4) | |
| C15 | 0.0000 | 0.7256 (5) | 0.2500 | 0.0577 (6) | |
| H15A | −0.0318 | 0.8431 | 0.2497 | 0.069* | |
| H1N2 | 0.3459 (8) | 0.782 (5) | 0.0986 (8) | 0.076 (6)* | |
| H1N1 | 0.1100 (8) | 0.914 (4) | 0.1093 (8) | 0.076 (6)* | |
| H2N2 | 0.3720 (10) | 0.970 (5) | 0.1407 (9) | 0.087 (7)* | |
| H1O2 | −0.0377 (4) | 0.708 (5) | 0.0215 (9) | 0.101 (8)* | |
| H106 | 0.0359 (11) | 0.277 (6) | 0.1633 (11) | 0.118 (9)* |
| O1 | 0.0428 (6) | 0.0887 (9) | 0.0941 (9) | 0.0145 (6) | 0.0024 (6) | −0.0245 (8) |
| O2 | 0.0540 (7) | 0.0738 (8) | 0.0968 (10) | 0.0054 (6) | 0.0106 (7) | −0.0355 (7) |
| O3 | 0.0419 (6) | 0.0825 (8) | 0.0691 (7) | 0.0156 (6) | 0.0030 (5) | −0.0146 (6) |
| O4 | 0.0498 (6) | 0.0737 (8) | 0.0849 (8) | 0.0168 (6) | 0.0147 (6) | −0.0213 (7) |
| O5 | 0.0489 (6) | 0.0961 (10) | 0.0726 (8) | 0.0098 (6) | −0.0045 (6) | −0.0194 (7) |
| O6 | 0.0606 (7) | 0.0848 (9) | 0.0654 (8) | 0.0233 (7) | −0.0046 (6) | −0.0097 (7) |
| N1 | 0.0367 (6) | 0.0633 (8) | 0.0538 (7) | 0.0116 (6) | 0.0049 (5) | 0.0025 (6) |
| N2 | 0.0379 (7) | 0.0767 (10) | 0.0755 (10) | 0.0060 (7) | 0.0072 (7) | −0.0156 (8) |
| C1 | 0.0425 (8) | 0.0668 (10) | 0.0592 (9) | 0.0066 (7) | −0.0009 (7) | 0.0000 (8) |
| C2 | 0.0486 (8) | 0.0628 (10) | 0.0578 (9) | 0.0086 (7) | 0.0039 (7) | −0.0074 (8) |
| C3 | 0.0419 (8) | 0.0590 (9) | 0.0537 (9) | 0.0118 (7) | 0.0084 (6) | −0.0010 (7) |
| C4 | 0.0382 (7) | 0.0500 (8) | 0.0457 (7) | 0.0089 (6) | 0.0080 (6) | 0.0074 (6) |
| C5 | 0.0400 (7) | 0.0524 (8) | 0.0507 (8) | 0.0071 (6) | 0.0076 (6) | 0.0063 (7) |
| C6 | 0.0490 (8) | 0.0601 (9) | 0.0522 (9) | 0.0032 (7) | 0.0084 (6) | 0.0002 (7) |
| C7 | 0.0597 (10) | 0.0624 (10) | 0.0525 (9) | 0.0095 (8) | 0.0131 (7) | −0.0059 (8) |
| C8 | 0.0469 (8) | 0.0654 (10) | 0.0530 (9) | 0.0148 (7) | 0.0127 (7) | 0.0013 (7) |
| C9 | 0.0380 (7) | 0.0535 (8) | 0.0457 (8) | 0.0103 (6) | 0.0068 (6) | 0.0090 (6) |
| C10 | 0.0613 (11) | 0.0880 (14) | 0.0763 (12) | −0.0041 (10) | 0.0059 (9) | −0.0216 (11) |
| C11 | 0.0458 (8) | 0.0521 (8) | 0.0588 (9) | 0.0081 (7) | 0.0097 (7) | −0.0027 (7) |
| C12 | 0.0461 (8) | 0.0580 (9) | 0.0580 (9) | 0.0166 (7) | 0.0023 (7) | −0.0075 (7) |
| C13 | 0.0422 (8) | 0.0588 (9) | 0.0555 (9) | 0.0132 (7) | 0.0104 (7) | 0.0015 (7) |
| C14 | 0.0442 (8) | 0.0558 (9) | 0.0529 (8) | 0.0000 (7) | 0.0066 (6) | 0.0047 (7) |
| C15 | 0.0634 (14) | 0.0508 (12) | 0.0581 (13) | 0.000 | 0.0020 (11) | 0.000 |
| O1—C11 | 1.2060 (18) | C4—C9 | 1.4178 (19) |
| O2—C11 | 1.3037 (19) | C4—C5 | 1.436 (2) |
| O2—H1O2 | 0.859 (10) | C5—C6 | 1.390 (2) |
| O3—C13 | 1.2556 (19) | C6—C7 | 1.402 (2) |
| O4—C13 | 1.2511 (19) | C6—C10 | 1.502 (2) |
| O5—C14 | 1.1973 (19) | C7—C8 | 1.365 (2) |
| O6—C14 | 1.3119 (19) | C7—H7A | 0.9300 |
| O6—H106 | 1.02 (3) | C8—C9 | 1.392 (2) |
| N1—C1 | 1.316 (2) | C8—H8A | 0.9300 |
| N1—C9 | 1.374 (2) | C10—H10A | 0.9600 |
| N1—H1N1 | 0.99 (2) | C10—H10B | 0.9600 |
| N2—C5 | 1.3619 (19) | C10—H10C | 0.9600 |
| N2—H1N2 | 0.91 (2) | C11—C12 | 1.497 (2) |
| N2—H2N2 | 0.90 (2) | C12—C13 | 1.515 (2) |
| C1—C2 | 1.384 (2) | C12—H12A | 0.9700 |
| C1—H1A | 0.9300 | C12—H12B | 0.9700 |
| C2—C3 | 1.368 (2) | C14—C15 | 1.504 (2) |
| C2—H2A | 0.9300 | C15—C14i | 1.505 (2) |
| C3—C4 | 1.403 (2) | C15—H15A | 0.9700 |
| C3—H3A | 0.9300 | ||
| C11—O2—H1O2 | 105.8 (17) | C7—C8—H8A | 121.0 |
| C14—O6—H106 | 112.4 (15) | C9—C8—H8A | 121.0 |
| C1—N1—C9 | 123.32 (13) | N1—C9—C8 | 120.35 (13) |
| C1—N1—H1N1 | 119.8 (12) | N1—C9—C4 | 117.77 (14) |
| C9—N1—H1N1 | 116.9 (12) | C8—C9—C4 | 121.88 (14) |
| C5—N2—H1N2 | 124.0 (13) | C6—C10—H10A | 109.5 |
| C5—N2—H2N2 | 123.7 (15) | C6—C10—H10B | 109.5 |
| H1N2—N2—H2N2 | 112.1 (19) | H10A—C10—H10B | 109.5 |
| N1—C1—C2 | 120.93 (15) | C6—C10—H10C | 109.5 |
| N1—C1—H1A | 119.5 | H10A—C10—H10C | 109.5 |
| C2—C1—H1A | 119.5 | H10B—C10—H10C | 109.5 |
| C3—C2—C1 | 118.60 (16) | O1—C11—O2 | 121.09 (16) |
| C3—C2—H2A | 120.7 | O1—C11—C12 | 121.68 (14) |
| C1—C2—H2A | 120.7 | O2—C11—C12 | 117.22 (13) |
| C2—C3—C4 | 121.41 (14) | C11—C12—C13 | 118.13 (14) |
| C2—C3—H3A | 119.3 | C11—C12—H12A | 107.8 |
| C4—C3—H3A | 119.3 | C13—C12—H12A | 107.8 |
| C3—C4—C9 | 117.96 (13) | C11—C12—H12B | 107.8 |
| C3—C4—C5 | 123.90 (13) | C13—C12—H12B | 107.8 |
| C9—C4—C5 | 118.13 (14) | H12A—C12—H12B | 107.1 |
| N2—C5—C6 | 120.70 (15) | O4—C13—O3 | 123.50 (14) |
| N2—C5—C4 | 119.77 (15) | O4—C13—C12 | 118.75 (15) |
| C6—C5—C4 | 119.52 (13) | O3—C13—C12 | 117.74 (14) |
| C5—C6—C7 | 119.12 (15) | O5—C14—O6 | 123.80 (16) |
| C5—C6—C10 | 120.49 (15) | O5—C14—C15 | 123.69 (14) |
| C7—C6—C10 | 120.39 (16) | O6—C14—C15 | 112.50 (13) |
| C8—C7—C6 | 123.39 (16) | C14—C15—C14i | 111.30 (19) |
| C8—C7—H7A | 118.3 | C14—C15—H15A | 109.4 |
| C6—C7—H7A | 118.3 | C14i—C15—H15A | 109.4 |
| C7—C8—C9 | 117.92 (14) | ||
| C9—N1—C1—C2 | 0.1 (3) | C6—C7—C8—C9 | 0.6 (3) |
| N1—C1—C2—C3 | −0.7 (3) | C1—N1—C9—C8 | −179.50 (15) |
| C1—C2—C3—C4 | 0.7 (3) | C1—N1—C9—C4 | 0.5 (2) |
| C2—C3—C4—C9 | −0.2 (2) | C7—C8—C9—N1 | 178.46 (15) |
| C2—C3—C4—C5 | 178.70 (15) | C7—C8—C9—C4 | −1.5 (2) |
| C3—C4—C5—N2 | 1.1 (2) | C3—C4—C9—N1 | −0.4 (2) |
| C9—C4—C5—N2 | −179.97 (14) | C5—C4—C9—N1 | −179.35 (13) |
| C3—C4—C5—C6 | −177.67 (14) | C3—C4—C9—C8 | 179.55 (14) |
| C9—C4—C5—C6 | 1.2 (2) | C5—C4—C9—C8 | 0.6 (2) |
| N2—C5—C6—C7 | 179.13 (16) | O1—C11—C12—C13 | 174.80 (16) |
| C4—C5—C6—C7 | −2.1 (2) | O2—C11—C12—C13 | −6.3 (2) |
| N2—C5—C6—C10 | −1.5 (3) | C11—C12—C13—O4 | 8.8 (2) |
| C4—C5—C6—C10 | 177.31 (16) | C11—C12—C13—O3 | −171.96 (15) |
| C5—C6—C7—C8 | 1.2 (3) | O5—C14—C15—C14i | 119.16 (18) |
| C10—C6—C7—C8 | −178.19 (18) | O6—C14—C15—C14i | −61.88 (12) |
| H··· | ||||
| N1—H1 | 1.00 (2) | 1.76 (2) | 2.7450 (17) | 172.3 (18) |
| O2—H1 | 0.86 (1) | 1.64 (1) | 2.4630 (18) | 159 (2) |
| C1—H1 | 0.93 | 2.44 | 3.095 (2) | 127 |
| N2—H1 | 0.91 (2) | 2.11 (2) | 3.012 (2) | 173.4 (18) |
| N2—H2 | 0.90 (2) | 2.20 (2) | 3.076 (2) | 166 (2) |
| O6—H106···O3iv | 1.02 (3) | 1.60 (3) | 2.5927 (19) | 164 (2) |
| C1—H1 | 0.93 | 2.28 | 3.106 (2) | 148 |
| C3—H3 | 0.93 | 2.34 | 3.2648 (19) | 174 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 1.00 (2) | 1.76 (2) | 2.7450 (17) | 172.3 (18) |
| O2—H1 | 0.86 (1) | 1.64 (1) | 2.4630 (18) | 159 (2) |
| C1—H1 | 0.93 | 2.44 | 3.095 (2) | 127 |
| N2—H1 | 0.91 (2) | 2.11 (2) | 3.012 (2) | 173.4 (18) |
| N2—H2 | 0.90 (2) | 2.20 (2) | 3.076 (2) | 166 (2) |
| O6—H106⋯O3iii | 1.02 (3) | 1.60 (3) | 2.5927 (19) | 164 (2) |
| C1—H1 | 0.93 | 2.28 | 3.106 (2) | 148 |
| C3—H3 | 0.93 | 2.34 | 3.2648 (19) | 174 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .