Literature DB >> 23476428

8-Hy-droxy-5,7-dimethyl-quinolin-1-ium chloride dihydrate.

Kaliyaperumal Thanigaimani1, Nuridayanti Che Khalib, Suhana Arshad, Ibrahim Abdul Razak.   

Abstract

In the title hydrated salt, C11H12NO(+)·Cl(-)·2H2O, the quinoline ring system is essentially planar, with a maximum deviation of 0.005 (1) Å for all non-H atoms. In the crystal, the three components are linked by O-H⋯O, N-H⋯O, O-H⋯Cl and weak C-H⋯O hydrogen bonds, forming a layer structure parallel to the ac plane. The crystal structure is further stabilized by π-π stacking inter-actions, with centroid-centroid distances of 3.5213 (6) and 3.7176 (6) Å.

Entities:  

Year:  2012        PMID: 23476428      PMCID: PMC3588230          DOI: 10.1107/S1600536812049495

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and the biological activity of quinoline derivatives, see: Balasubramanian & Muthiah (1996a ▶,b ▶); Morimoto et al. (1991 ▶); Markees et al. (1970 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C11H12NO+·Cl−·2H2O M = 245.70 Triclinic, a = 6.7990 (5) Å b = 9.2215 (6) Å c = 10.2123 (7) Å α = 103.820 (1)° β = 95.629 (1)° γ = 105.517 (1)° V = 590.04 (7) Å3 Z = 2 Mo Kα radiation μ = 0.32 mm−1 T = 100 K 0.38 × 0.20 × 0.14 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.889, T max = 0.958 9368 measured reflections 3410 independent reflections 3153 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.092 S = 1.08 3410 reflections 171 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812049495/is5226sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049495/is5226Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12NO+·Cl·2H2OZ = 2
Mr = 245.70F(000) = 260
Triclinic, P1Dx = 1.383 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.7990 (5) ÅCell parameters from 6250 reflections
b = 9.2215 (6) Åθ = 2.7–30.1°
c = 10.2123 (7) ŵ = 0.32 mm1
α = 103.820 (1)°T = 100 K
β = 95.629 (1)°Block, yellow
γ = 105.517 (1)°0.38 × 0.20 × 0.14 mm
V = 590.04 (7) Å3
Bruker APEXII DUO CCD area-detector diffractometer3410 independent reflections
Radiation source: fine-focus sealed tube3153 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
φ and ω scansθmax = 30.1°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.889, Tmax = 0.958k = −12→12
9368 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.058P)2 + 0.1137P] where P = (Fo2 + 2Fc2)/3
3410 reflections(Δ/σ)max = 0.001
171 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.26 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.22874 (4)0.70417 (3)0.91682 (2)0.01867 (8)
O1W0.49841 (12)0.45266 (8)0.25460 (7)0.01707 (15)
O10.34288 (12)0.31466 (8)0.43983 (7)0.01753 (15)
O2W0.22470 (13)0.42047 (10)1.03561 (8)0.02223 (16)
N10.35726 (12)0.22535 (9)0.66748 (8)0.01260 (15)
C10.36928 (14)0.19382 (11)0.78767 (9)0.01493 (17)
H1A0.41330.27700.86990.018*
C20.31746 (15)0.03900 (11)0.79353 (9)0.01541 (17)
H2A0.32590.01590.87930.018*
C30.25385 (14)−0.08005 (11)0.67341 (9)0.01452 (17)
H3A0.2176−0.18580.67690.017*
C40.24166 (13)−0.04734 (10)0.54510 (9)0.01229 (16)
C50.17880 (14)−0.16484 (10)0.41697 (9)0.01365 (17)
C60.17410 (14)−0.11634 (10)0.29989 (9)0.01398 (17)
H6A0.1328−0.19420.21430.017*
C70.22731 (13)0.04326 (10)0.29896 (9)0.01296 (17)
C80.29038 (13)0.15788 (10)0.42249 (9)0.01246 (16)
C90.29632 (13)0.11195 (10)0.54492 (9)0.01168 (16)
C100.11810 (16)−0.33626 (11)0.41114 (10)0.01908 (19)
H10A0.0812−0.39940.31530.029*
H10B−0.0012−0.36130.45730.029*
H10C0.2348−0.35950.45690.029*
C110.21195 (15)0.08368 (11)0.16520 (9)0.01676 (18)
H11A0.13070.15720.16800.025*
H11B0.1439−0.01180.09080.025*
H11C0.35130.13200.14940.025*
H1N10.389 (3)0.318 (2)0.6664 (18)0.037 (4)*
H2W10.584 (3)0.411 (2)0.2240 (19)0.040 (5)*
H2W20.228 (3)0.497 (2)1.001 (2)0.050 (5)*
H1O10.385 (3)0.347 (2)0.3707 (19)0.038 (4)*
H1W20.115 (3)0.390 (2)1.0495 (18)0.036 (4)*
H1W10.416 (3)0.446 (2)0.1895 (19)0.038 (4)*
U11U22U33U12U13U23
Cl10.02078 (13)0.01844 (12)0.01979 (13)0.00704 (9)0.00619 (9)0.00844 (9)
O1W0.0219 (3)0.0155 (3)0.0134 (3)0.0053 (3)0.0038 (3)0.0035 (2)
O10.0275 (4)0.0127 (3)0.0126 (3)0.0050 (3)0.0048 (3)0.0046 (2)
O2W0.0205 (4)0.0251 (4)0.0262 (4)0.0094 (3)0.0057 (3)0.0130 (3)
N10.0138 (3)0.0131 (3)0.0105 (3)0.0039 (3)0.0020 (3)0.0027 (3)
C10.0157 (4)0.0183 (4)0.0103 (4)0.0050 (3)0.0021 (3)0.0032 (3)
C20.0165 (4)0.0192 (4)0.0119 (4)0.0058 (3)0.0029 (3)0.0061 (3)
C30.0146 (4)0.0160 (4)0.0143 (4)0.0048 (3)0.0033 (3)0.0061 (3)
C40.0112 (4)0.0142 (4)0.0120 (4)0.0044 (3)0.0021 (3)0.0040 (3)
C50.0134 (4)0.0131 (4)0.0140 (4)0.0040 (3)0.0025 (3)0.0029 (3)
C60.0140 (4)0.0147 (4)0.0118 (4)0.0040 (3)0.0019 (3)0.0015 (3)
C70.0123 (4)0.0158 (4)0.0110 (4)0.0046 (3)0.0022 (3)0.0038 (3)
C80.0133 (4)0.0134 (4)0.0114 (4)0.0044 (3)0.0028 (3)0.0041 (3)
C90.0108 (3)0.0142 (4)0.0100 (4)0.0041 (3)0.0022 (3)0.0028 (3)
C100.0241 (5)0.0128 (4)0.0187 (4)0.0039 (3)0.0031 (4)0.0033 (3)
C110.0208 (4)0.0188 (4)0.0100 (4)0.0052 (3)0.0015 (3)0.0040 (3)
O1W—H2W10.828 (19)C4—C91.4160 (12)
O1W—H1W10.806 (19)C4—C51.4262 (12)
O1—C81.3558 (11)C5—C61.3735 (12)
O1—H1O10.873 (19)C5—C101.5079 (13)
O2W—H2W20.86 (2)C6—C71.4211 (12)
O2W—H1W20.76 (2)C6—H6A0.9500
N1—C11.3271 (11)C7—C81.3809 (12)
N1—C91.3686 (11)C7—C111.5006 (12)
N1—H1N10.828 (19)C8—C91.4129 (12)
C1—C21.3935 (13)C10—H10A0.9800
C1—H1A0.9500C10—H10B0.9800
C2—C31.3768 (13)C10—H10C0.9800
C2—H2A0.9500C11—H11A0.9800
C3—C41.4127 (12)C11—H11B0.9800
C3—H3A0.9500C11—H11C0.9800
H2W1—O1W—H1W1106.5 (17)C7—C6—H6A118.0
C8—O1—H1O1116.0 (11)C8—C7—C6118.69 (8)
H2W2—O2W—H1W2107.8 (19)C8—C7—C11121.56 (8)
C1—N1—C9123.25 (8)C6—C7—C11119.75 (8)
C1—N1—H1N1118.5 (12)O1—C8—C7126.20 (8)
C9—N1—H1N1118.2 (12)O1—C8—C9115.02 (8)
N1—C1—C2120.13 (8)C7—C8—C9118.75 (8)
N1—C1—H1A119.9N1—C9—C8118.85 (8)
C2—C1—H1A119.9N1—C9—C4118.90 (8)
C3—C2—C1119.17 (8)C8—C9—C4122.25 (8)
C3—C2—H2A120.4C5—C10—H10A109.5
C1—C2—H2A120.4C5—C10—H10B109.5
C2—C3—C4121.00 (8)H10A—C10—H10B109.5
C2—C3—H3A119.5C5—C10—H10C109.5
C4—C3—H3A119.5H10A—C10—H10C109.5
C3—C4—C9117.54 (8)H10B—C10—H10C109.5
C3—C4—C5123.88 (8)C7—C11—H11A109.5
C9—C4—C5118.58 (8)C7—C11—H11B109.5
C6—C5—C4117.73 (8)H11A—C11—H11B109.5
C6—C5—C10121.45 (8)C7—C11—H11C109.5
C4—C5—C10120.82 (8)H11A—C11—H11C109.5
C5—C6—C7123.99 (8)H11B—C11—H11C109.5
C5—C6—H6A118.0
C9—N1—C1—C2−0.37 (14)C11—C7—C8—O10.57 (14)
N1—C1—C2—C3−0.04 (14)C6—C7—C8—C9−1.01 (13)
C1—C2—C3—C40.35 (14)C11—C7—C8—C9178.35 (8)
C2—C3—C4—C9−0.27 (13)C1—N1—C9—C8−179.47 (8)
C2—C3—C4—C5179.45 (8)C1—N1—C9—C40.44 (13)
C3—C4—C5—C6−179.96 (8)O1—C8—C9—N1−1.49 (12)
C9—C4—C5—C6−0.25 (12)C7—C8—C9—N1−179.51 (8)
C3—C4—C5—C100.53 (13)O1—C8—C9—C4178.60 (8)
C9—C4—C5—C10−179.75 (8)C7—C8—C9—C40.59 (13)
C4—C5—C6—C7−0.21 (13)C3—C4—C9—N1−0.12 (12)
C10—C5—C6—C7179.30 (8)C5—C4—C9—N1−179.85 (8)
C5—C6—C7—C80.86 (14)C3—C4—C9—C8179.79 (8)
C5—C6—C7—C11−178.51 (9)C5—C4—C9—C80.06 (13)
C6—C7—C8—O1−178.78 (8)
D—H···AD—HH···AD···AD—H···A
C1—H1A···O2W0.952.553.2871 (13)134
O2W—H2W2···Cl10.858 (19)2.274 (19)3.1306 (10)177.4 (18)
O1—H1O1···O1W0.874 (19)1.811 (19)2.6718 (10)167.9 (18)
N1—H1N1···O1Wi0.826 (18)1.977 (18)2.7516 (11)155.9 (17)
O1W—H2W1···Cl1i0.83 (2)2.27 (2)3.0758 (9)164.0 (18)
O2W—H1W2···Cl1ii0.76 (2)2.36 (2)3.1187 (10)177.7 (18)
O1W—H1W1···O2Wiii0.805 (19)1.86 (2)2.6690 (11)177.2 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1A⋯O2W 0.952.553.2871 (13)134
O2W—H2W2⋯Cl10.858 (19)2.274 (19)3.1306 (10)177.4 (18)
O1—H1O1⋯O1W 0.874 (19)1.811 (19)2.6718 (10)167.9 (18)
N1—H1N1⋯O1W i 0.826 (18)1.977 (18)2.7516 (11)155.9 (17)
O1W—H2W1⋯Cl1i 0.83 (2)2.27 (2)3.0758 (9)164.0 (18)
O2W—H1W2⋯Cl1ii 0.76 (2)2.36 (2)3.1187 (10)177.7 (18)
O1W—H1W1⋯O2W iii 0.805 (19)1.86 (2)2.6690 (11)177.2 (19)

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  D G Markees; V C Dewey; G W Kidder
Journal:  J Med Chem       Date:  1970-03       Impact factor: 7.446

3.  8-Hydroxy-7-nitroquinoline-5-sulfonic acid monohydrate.

Authors:  T P Balasubramanian; P T Muthiah
Journal:  Acta Crystallogr C       Date:  1996-04-15       Impact factor: 1.172

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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1.  5-Amino-6-methyl-quinolin-1-ium 3-carb-oxy-propano-ate.

Authors:  Kaliyaperumal Thanigaimani; Nuridayanti Che Khalib; Suhana Arshad; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-16

2.  5-Amino-6-methyl-quinolin-1-ium hydrogen malonate-malonic acid (2/1).

Authors:  Kaliyaperumal Thanigaimani; Nuridayanti Che Khalib; Suhana Arshad; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-02
  2 in total

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