Literature DB >> 23476447

6-(3-Chloro-phen-yl)imidazo[2,1-b][1,3,4]thia-diazole.

A S Praveen1, Jerry P Jasinski, Shannon T Krauss, H S Yathirajan, B Narayana.   

Abstract

In the title compound, C10H8ClN3S, the dihedral angle between the mean planes of the benzene and imidazo[2,1-b][1,3,4]thia-diazole rings is 6.0 (9)°. In the crystal, mol-ecules are assembled by the formation of centrosymmetric dimers by π-stacking of the thia-diazole and benzene rings of neighboring mol-ecules [centroid-centroid distance = 3.6938 (11) Å] along [010].

Entities:  

Year:  2012        PMID: 23476447      PMCID: PMC3588322          DOI: 10.1107/S1600536812049793

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related imidazothia­diazole derivatives and their pharmacological potential, see: Palagiano et al. (1995 ▶). For related structures, see: Banu et al. (2011a ▶,b ▶); Fun et al. (2011a ▶,b ▶). For standard bond lengths, see Allen et al. (1987 ▶).

Experimental

Crystal data

C10H6ClN3S M = 235.70 Monoclinic, a = 5.43804 (19) Å b = 12.4222 (4) Å c = 14.1684 (4) Å β = 100.269 (3)° V = 941.77 (5) Å3 Z = 4 Cu Kα radiation μ = 5.37 mm−1 T = 173 K 0.26 × 0.12 × 0.06 mm

Data collection

Agilent Xcalibur (Eos, Gemini) diffractometer Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012 ▶) T min = 0.691, T max = 1.000 5495 measured reflections 1846 independent reflections 1650 reflections with I > 2σ(I)) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.100 S = 1.06 1846 reflections 137 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812049793/im2414sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049793/im2414Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812049793/im2414Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H6ClN3SF(000) = 480
Mr = 235.70Dx = 1.676 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ynCell parameters from 2788 reflections
a = 5.43804 (19) Åθ = 3.2–72.4°
b = 12.4222 (4) ŵ = 5.37 mm1
c = 14.1684 (4) ÅT = 173 K
β = 100.269 (3)°Chunk, colorless
V = 941.77 (5) Å30.26 × 0.12 × 0.06 mm
Z = 4
Agilent Xcalibur (Eos, Gemini) diffractometer1846 independent reflections
Radiation source: Enhance (Cu) X-ray Source1650 reflections with I > 2σ(I))
Graphite monochromatorRint = 0.046
Detector resolution: 16.0416 pixels mm-1θmax = 72.5°, θmin = 4.8°
ω scansh = −6→6
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012)k = −12→15
Tmin = 0.691, Tmax = 1.000l = −17→13
5495 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.100w = 1/[σ2(Fo2) + (0.0559P)2 + 0.2711P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
1846 reflectionsΔρmax = 0.36 e Å3
137 parametersΔρmin = −0.23 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0028 (5)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.35900 (10)0.10200 (4)0.67741 (4)0.02949 (18)
S10.39725 (10)0.62878 (4)0.24567 (3)0.02652 (18)
N10.0469 (3)0.61595 (14)0.34925 (13)0.0253 (4)
N20.2006 (3)0.52794 (13)0.36757 (12)0.0199 (4)
N30.5314 (3)0.43233 (13)0.34504 (12)0.0222 (4)
C10.1320 (4)0.67447 (17)0.28675 (15)0.0261 (4)
H10.05450.73860.26450.031*
C20.3979 (4)0.51895 (15)0.32099 (13)0.0208 (4)
C30.2043 (4)0.44025 (16)0.42652 (14)0.0217 (4)
H30.09290.42350.46710.026*
C40.4101 (4)0.38271 (15)0.41207 (13)0.0190 (4)
C50.5067 (3)0.28278 (15)0.46084 (13)0.0192 (4)
C60.3963 (3)0.24196 (15)0.53512 (14)0.0205 (4)
H60.26050.27690.55310.025*
C70.4911 (4)0.14891 (16)0.58176 (13)0.0213 (4)
C80.6921 (4)0.09440 (16)0.55644 (16)0.0258 (4)
H80.75260.03170.58810.031*
C90.8008 (4)0.13562 (16)0.48276 (15)0.0254 (4)
H90.93600.10010.46500.030*
C100.7107 (4)0.22930 (15)0.43499 (14)0.0219 (4)
H100.78610.25630.38600.026*
U11U22U33U12U13U23
Cl10.0325 (3)0.0305 (3)0.0269 (3)0.00059 (19)0.0091 (2)0.00925 (19)
S10.0346 (3)0.0247 (3)0.0222 (3)0.00174 (19)0.0104 (2)0.00440 (18)
N10.0239 (9)0.0224 (8)0.0297 (9)0.0063 (6)0.0050 (7)0.0021 (7)
N20.0198 (8)0.0193 (8)0.0212 (8)0.0029 (6)0.0052 (6)−0.0002 (6)
N30.0228 (8)0.0234 (8)0.0221 (8)0.0031 (7)0.0087 (7)0.0004 (6)
C10.0292 (11)0.0235 (10)0.0246 (10)0.0033 (8)0.0019 (8)0.0003 (8)
C20.0243 (10)0.0224 (9)0.0167 (9)−0.0007 (7)0.0069 (7)−0.0006 (7)
C30.0237 (10)0.0215 (9)0.0220 (9)0.0030 (7)0.0096 (8)0.0032 (7)
C40.0195 (10)0.0208 (9)0.0166 (9)0.0000 (7)0.0027 (7)−0.0023 (7)
C50.0190 (9)0.0200 (9)0.0181 (9)−0.0005 (7)0.0021 (7)−0.0034 (7)
C60.0194 (9)0.0220 (9)0.0203 (9)0.0013 (7)0.0045 (7)−0.0021 (7)
C70.0212 (10)0.0228 (9)0.0197 (9)−0.0031 (8)0.0035 (8)0.0002 (7)
C80.0256 (10)0.0220 (10)0.0289 (11)0.0044 (8)0.0023 (9)0.0022 (8)
C90.0220 (10)0.0258 (10)0.0292 (10)0.0043 (8)0.0069 (8)−0.0028 (8)
C100.0229 (10)0.0221 (9)0.0214 (9)−0.0003 (8)0.0063 (8)−0.0023 (7)
Cl1—C71.7432 (19)C4—C51.471 (3)
S1—C21.7318 (19)C5—C61.397 (3)
S1—C11.744 (2)C5—C101.397 (3)
N1—C11.293 (3)C6—C71.385 (3)
N1—N21.373 (2)C6—H60.9300
N2—C21.361 (3)C7—C81.386 (3)
N2—C31.371 (2)C8—C91.386 (3)
N3—C21.309 (2)C8—H80.9300
N3—C41.393 (2)C9—C101.391 (3)
C1—H10.9300C9—H90.9300
C3—C41.373 (3)C10—H100.9300
C3—H30.9300
C2—S1—C187.81 (9)C6—C5—C10119.54 (18)
C1—N1—N2107.27 (17)C6—C5—C4119.66 (17)
C2—N2—C3107.63 (16)C10—C5—C4120.79 (18)
C2—N2—N1118.68 (16)C7—C6—C5119.29 (17)
C3—N2—N1133.69 (17)C7—C6—H6120.4
C2—N3—C4103.49 (15)C5—C6—H6120.4
N1—C1—S1117.63 (16)C6—C7—C8121.87 (18)
N1—C1—H1121.2C6—C7—Cl1118.69 (15)
S1—C1—H1121.2C8—C7—Cl1119.41 (16)
N3—C2—N2112.95 (17)C9—C8—C7118.44 (19)
N3—C2—S1138.46 (15)C9—C8—H8120.8
N2—C2—S1108.59 (14)C7—C8—H8120.8
N2—C3—C4104.29 (16)C8—C9—C10121.00 (19)
N2—C3—H3127.9C8—C9—H9119.5
C4—C3—H3127.9C10—C9—H9119.5
C3—C4—N3111.64 (16)C9—C10—C5119.86 (18)
C3—C4—C5126.96 (18)C9—C10—H10120.1
N3—C4—C5121.37 (17)C5—C10—H10120.1
C1—N1—N2—C20.2 (2)C2—N3—C4—C30.4 (2)
C1—N1—N2—C3179.7 (2)C2—N3—C4—C5−177.68 (17)
N2—N1—C1—S10.3 (2)C3—C4—C5—C6−4.9 (3)
C2—S1—C1—N1−0.45 (17)N3—C4—C5—C6172.90 (17)
C4—N3—C2—N2−0.1 (2)C3—C4—C5—C10176.33 (19)
C4—N3—C2—S1179.75 (18)N3—C4—C5—C10−5.9 (3)
C3—N2—C2—N3−0.2 (2)C10—C5—C6—C7−0.1 (3)
N1—N2—C2—N3179.44 (17)C4—C5—C6—C7−178.88 (17)
C3—N2—C2—S1179.87 (13)C5—C6—C7—C8−0.4 (3)
N1—N2—C2—S1−0.5 (2)C5—C6—C7—Cl1177.50 (14)
C1—S1—C2—N3−179.4 (2)C6—C7—C8—C90.5 (3)
C1—S1—C2—N20.47 (14)Cl1—C7—C8—C9−177.37 (15)
C2—N2—C3—C40.5 (2)C7—C8—C9—C10−0.1 (3)
N1—N2—C3—C4−179.12 (19)C8—C9—C10—C5−0.4 (3)
N2—C3—C4—N3−0.6 (2)C6—C5—C10—C90.5 (3)
N2—C3—C4—C5177.43 (17)C4—C5—C10—C9179.27 (18)
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Isobutyl-6-(4-meth-oxy-phen-yl)imidazo[2,1-b][1,3,4]thia-diazole.

Authors:  Hoong-Kun Fun; Chin Sing Yeap; D Jagadeesh Prasad; Prakash Anil Castelino; V V Anitha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

3.  3-{[6-(4-Chloro-phen-yl)imidazo[2,1-b][1,3,4]thia-diazol-2-yl]meth-yl}-1,2-benzoxazole.

Authors:  Afshan Banu; Mohamed Ziaulla; Noor Shahina Begum; Ravi S Lamani; I M Khazi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

4.  6-(4-Chloro-phen-yl)-2-isobutyl-imidazo[2,1-b][1,3,4]thia-diazole.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; D Jagadeesh Prasad; G K Nagaraja; V V Anitha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-24

5.  6-(4-Bromo-phen-yl)-2-(4-fluoro-benz-yl)imidazo[2,1-b][1,3,4]thia-diazole.

Authors:  Afshan Banu; Noor Shahina Begum; Ravi S Lamani; I M Khazi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05
  5 in total

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