Literature DB >> 21522949

2-Isobutyl-6-(4-meth-oxy-phen-yl)imidazo[2,1-b][1,3,4]thia-diazole.

Hoong-Kun Fun, Chin Sing Yeap, D Jagadeesh Prasad, Prakash Anil Castelino, V V Anitha.   

Abstract

In the title compound, C(15)H(17)N(3)OS, the dihedral angle between the statistically planar imidazo[2,1-b][1,3,4]thia-dia-zole fused-ring system (r.m.s. deviation = 0.002 Å) and the methyoxbenzene ring is 4.52 (6)°. In the crystal, mol-ecules are arranged into columns and stacked down the a axis. The crystal structure is stabilized by weak C-H⋯π and π-π inter-actions [centroid-centroid separations = 3.6053 (8) and 3.7088 (7) Å].

Entities:  

Year:  2011        PMID: 21522949      PMCID: PMC3051798          DOI: 10.1107/S1600536810053225

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background references to imidazo[2,1-b]-1,3,4-thia­diazole derivatives, see: Fun et al. (2011 ▶).

Experimental

Crystal data

C15H17N3OS M = 287.38 Triclinic, a = 5.7139 (1) Å b = 10.1795 (1) Å c = 12.9689 (2) Å α = 85.174 (1)° β = 85.164 (1)° γ = 80.690 (1)° V = 739.84 (2) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 296 K 0.43 × 0.31 × 0.17 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.911, T max = 0.964 23503 measured reflections 6213 independent reflections 3805 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.163 S = 1.03 6213 reflections 181 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810053225/hb5778sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053225/hb5778Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H17N3OSZ = 2
Mr = 287.38F(000) = 304
Triclinic, P1Dx = 1.290 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.7139 (1) ÅCell parameters from 6150 reflections
b = 10.1795 (1) Åθ = 2.5–30.1°
c = 12.9689 (2) ŵ = 0.22 mm1
α = 85.174 (1)°T = 296 K
β = 85.164 (1)°Block, colourless
γ = 80.690 (1)°0.43 × 0.31 × 0.17 mm
V = 739.84 (2) Å3
Bruker SMART APEXII CCD diffractometer6213 independent reflections
Radiation source: fine-focus sealed tube3805 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 34.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.911, Tmax = 0.964k = −16→16
23503 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0765P)2 + 0.0748P] where P = (Fo2 + 2Fc2)/3
6213 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.14439 (6)1.02701 (4)0.26563 (3)0.05911 (14)
O11.1085 (2)0.33486 (12)0.78317 (9)0.0741 (3)
N10.7031 (2)1.05243 (12)0.33719 (9)0.0523 (3)
N20.82991 (18)0.94641 (11)0.39100 (8)0.0448 (2)
N31.16801 (18)0.81311 (11)0.42311 (8)0.0470 (2)
C11.2380 (2)0.58244 (13)0.57132 (10)0.0459 (3)
H1A1.36370.60300.52580.055*
C21.2769 (3)0.47212 (13)0.64264 (10)0.0498 (3)
H2A1.42610.41990.64420.060*
C31.0917 (3)0.44125 (14)0.71078 (10)0.0515 (3)
C40.8704 (3)0.52078 (17)0.70788 (12)0.0620 (4)
H4A0.74560.50080.75420.074*
C50.8345 (2)0.62946 (16)0.63658 (12)0.0541 (3)
H5A0.68520.68170.63540.065*
C61.0186 (2)0.66223 (12)0.56621 (9)0.0405 (2)
C70.9808 (2)0.77580 (12)0.48936 (9)0.0397 (2)
C80.7710 (2)0.85747 (13)0.47028 (10)0.0497 (3)
H8A0.62170.85330.50380.060*
C90.8461 (2)1.10357 (13)0.26920 (10)0.0473 (3)
C101.0665 (2)0.91576 (13)0.36590 (9)0.0441 (3)
C110.7678 (3)1.22647 (14)0.20133 (11)0.0571 (4)
H11A0.83701.29920.22400.069*
H11B0.59651.24930.21230.069*
C120.8305 (3)1.21810 (16)0.08633 (11)0.0642 (4)
H12A1.00261.19050.07540.077*
C130.7083 (6)1.1178 (2)0.04179 (17)0.1097 (9)
H13A0.74821.03220.07830.165*
H13B0.75941.1119−0.03030.165*
H13C0.53931.14550.04890.165*
C140.7663 (6)1.3557 (2)0.03141 (17)0.1117 (9)
H14A0.84611.41830.06070.167*
H14B0.59751.38360.04000.167*
H14C0.81481.3522−0.04110.167*
C151.3354 (4)0.25718 (19)0.79377 (16)0.0840 (6)
H15A1.32330.18630.84670.126*
H15B1.44360.31250.81270.126*
H15C1.39310.22000.72910.126*
U11U22U33U12U13U23
S10.04595 (19)0.0694 (3)0.0549 (2)−0.00092 (16)0.00022 (14)0.01745 (17)
O10.0866 (8)0.0673 (7)0.0650 (7)−0.0162 (6)−0.0051 (6)0.0229 (5)
N10.0439 (6)0.0567 (7)0.0504 (6)0.0074 (5)−0.0069 (5)0.0047 (5)
N20.0364 (5)0.0504 (6)0.0438 (5)0.0022 (4)−0.0044 (4)0.0022 (4)
N30.0361 (5)0.0551 (6)0.0462 (6)−0.0009 (4)−0.0031 (4)0.0060 (4)
C10.0453 (6)0.0489 (7)0.0394 (6)0.0004 (5)0.0018 (5)0.0001 (5)
C20.0532 (7)0.0483 (7)0.0440 (6)0.0019 (5)−0.0021 (5)−0.0004 (5)
C30.0644 (8)0.0468 (7)0.0441 (6)−0.0126 (6)−0.0077 (6)0.0034 (5)
C40.0531 (8)0.0731 (10)0.0584 (8)−0.0177 (7)0.0027 (6)0.0119 (7)
C50.0394 (6)0.0654 (8)0.0546 (7)−0.0063 (6)0.0001 (5)0.0060 (6)
C60.0395 (6)0.0448 (6)0.0374 (5)−0.0054 (5)−0.0040 (4)−0.0050 (4)
C70.0372 (5)0.0445 (6)0.0365 (5)−0.0023 (4)−0.0035 (4)−0.0050 (4)
C80.0375 (6)0.0565 (8)0.0505 (7)−0.0008 (5)0.0019 (5)0.0051 (6)
C90.0514 (7)0.0489 (7)0.0394 (6)0.0027 (5)−0.0096 (5)−0.0042 (5)
C100.0364 (6)0.0528 (7)0.0409 (6)−0.0022 (5)−0.0038 (4)0.0010 (5)
C110.0711 (9)0.0495 (7)0.0465 (7)0.0050 (6)−0.0117 (6)0.0006 (5)
C120.0702 (10)0.0673 (9)0.0486 (8)0.0017 (8)−0.0023 (7)0.0078 (7)
C130.175 (3)0.0923 (15)0.0672 (12)−0.0145 (17)−0.0461 (15)−0.0119 (11)
C140.164 (3)0.0872 (14)0.0717 (13)−0.0059 (16)−0.0039 (14)0.0319 (11)
C150.1056 (16)0.0615 (10)0.0816 (12)−0.0074 (10)−0.0270 (11)0.0232 (9)
S1—C101.7290 (13)C6—C71.4622 (16)
S1—C91.7545 (14)C7—C81.3722 (17)
O1—C31.3690 (16)C8—H8A0.9300
O1—C151.416 (2)C9—C111.4966 (18)
N1—C91.2864 (19)C11—C121.510 (2)
N1—N21.3721 (14)C11—H11A0.9700
N2—C101.3554 (16)C11—H11B0.9700
N2—C81.3689 (16)C12—C131.503 (3)
N3—C101.3133 (15)C12—C141.521 (2)
N3—C71.3957 (16)C12—H12A0.9800
C1—C61.3825 (17)C13—H13A0.9600
C1—C21.3947 (17)C13—H13B0.9600
C1—H1A0.9300C13—H13C0.9600
C2—C31.379 (2)C14—H14A0.9600
C2—H2A0.9300C14—H14B0.9600
C3—C41.388 (2)C14—H14C0.9600
C4—C51.381 (2)C15—H15A0.9600
C4—H4A0.9300C15—H15B0.9600
C5—C61.3967 (18)C15—H15C0.9600
C5—H5A0.9300
C10—S1—C988.40 (6)N3—C10—N2112.76 (11)
C3—O1—C15117.66 (14)N3—C10—S1138.85 (10)
C9—N1—N2108.55 (11)N2—C10—S1108.39 (9)
C10—N2—C8107.69 (10)C9—C11—C12116.36 (12)
C10—N2—N1118.51 (11)C9—C11—H11A108.2
C8—N2—N1133.79 (11)C12—C11—H11A108.2
C10—N3—C7103.73 (10)C9—C11—H11B108.2
C6—C1—C2122.09 (12)C12—C11—H11B108.2
C6—C1—H1A119.0H11A—C11—H11B107.4
C2—C1—H1A119.0C13—C12—C11112.03 (16)
C3—C2—C1119.33 (13)C13—C12—C14110.67 (17)
C3—C2—H2A120.3C11—C12—C14109.10 (15)
C1—C2—H2A120.3C13—C12—H12A108.3
O1—C3—C2124.39 (14)C11—C12—H12A108.3
O1—C3—C4115.99 (14)C14—C12—H12A108.3
C2—C3—C4119.62 (13)C12—C13—H13A109.5
C5—C4—C3120.36 (14)C12—C13—H13B109.5
C5—C4—H4A119.8H13A—C13—H13B109.5
C3—C4—H4A119.8C12—C13—H13C109.5
C4—C5—C6121.14 (14)H13A—C13—H13C109.5
C4—C5—H5A119.4H13B—C13—H13C109.5
C6—C5—H5A119.4C12—C14—H14A109.5
C1—C6—C5117.46 (12)C12—C14—H14B109.5
C1—C6—C7121.12 (11)H14A—C14—H14B109.5
C5—C6—C7121.42 (11)C12—C14—H14C109.5
C8—C7—N3111.03 (11)H14A—C14—H14C109.5
C8—C7—C6127.62 (11)H14B—C14—H14C109.5
N3—C7—C6121.35 (10)O1—C15—H15A109.5
N2—C8—C7104.79 (11)O1—C15—H15B109.5
N2—C8—H8A127.6H15A—C15—H15B109.5
C7—C8—H8A127.6O1—C15—H15C109.5
N1—C9—C11122.38 (13)H15A—C15—H15C109.5
N1—C9—S1116.15 (10)H15B—C15—H15C109.5
C11—C9—S1121.36 (11)
C9—N1—N2—C100.23 (17)C10—N2—C8—C70.06 (15)
C9—N1—N2—C8179.94 (14)N1—N2—C8—C7−179.67 (13)
C6—C1—C2—C3−0.3 (2)N3—C7—C8—N20.03 (15)
C15—O1—C3—C24.8 (2)C6—C7—C8—N2−179.34 (11)
C15—O1—C3—C4−175.43 (15)N2—N1—C9—C11−176.23 (11)
C1—C2—C3—O1179.30 (13)N2—N1—C9—S1−0.04 (15)
C1—C2—C3—C4−0.4 (2)C10—S1—C9—N1−0.10 (12)
O1—C3—C4—C5−179.11 (14)C10—S1—C9—C11176.13 (11)
C2—C3—C4—C50.7 (2)C7—N3—C10—N20.14 (15)
C3—C4—C5—C6−0.2 (2)C7—N3—C10—S1−179.92 (13)
C2—C1—C6—C50.7 (2)C8—N2—C10—N3−0.13 (16)
C2—C1—C6—C7−178.73 (12)N1—N2—C10—N3179.65 (11)
C4—C5—C6—C1−0.5 (2)C8—N2—C10—S1179.92 (9)
C4—C5—C6—C7178.95 (13)N1—N2—C10—S1−0.31 (15)
C10—N3—C7—C8−0.10 (14)C9—S1—C10—N3−179.73 (16)
C10—N3—C7—C6179.31 (11)C9—S1—C10—N20.21 (10)
C1—C6—C7—C8175.00 (13)N1—C9—C11—C12−129.32 (16)
C5—C6—C7—C8−4.5 (2)S1—C9—C11—C1254.69 (18)
C1—C6—C7—N3−4.31 (18)C9—C11—C12—C1364.3 (2)
C5—C6—C7—N3176.24 (12)C9—C11—C12—C14−172.81 (17)
Cg3 is the centroid of the C1–C6 benzene ring.
D—H···AD—HH···AD···AD—H···A
C11—H11A···Cg3i0.972.603.5063 (16)155
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C1–C6 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11ACg3i0.972.603.5063 (16)155

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Isobutyl-6-phenyl-imidazo[2,1-b][1,3,4]thia-diazole.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; D Jagadeesh Prasad; Prakash Anil Castelino; V V Anitha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  6-(3-Chloro-phen-yl)imidazo[2,1-b][1,3,4]thia-diazole.

Authors:  A S Praveen; Jerry P Jasinski; Shannon T Krauss; H S Yathirajan; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-12
  1 in total

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