Literature DB >> 21522374

3-{[6-(4-Chloro-phen-yl)imidazo[2,1-b][1,3,4]thia-diazol-2-yl]meth-yl}-1,2-benzoxazole.

Afshan Banu, Mohamed Ziaulla, Noor Shahina Begum, Ravi S Lamani, I M Khazi.   

Abstract

In the title compound, C(18)H(11)ClN(4)OS, the benzisoxazole and imidazothia-diazole rings are inclined at an angle of 23.81 (7)° with respect to each other. The imidazothia-diazole and chloro-phenyl rings make a dihedral angle of 27.34 (3)°. In the crystal, inter-molecular C-H⋯N inter-actions generate a chain along the c axis and C-H⋯O inter-actions form centrosymmetric dimers resulting in an R(2) (2)(26) graph-set motif. Moreover, the C-H⋯N and S⋯N [3.206 (4) Å] inter-actions links the mol-ecules into R(7) ring motifs. The packing is further stabilized by π-π stacking inter-actions between the thia-diazole rings with a shortest centroid-centroid distance of 3.497 (3) Å. In addition, C-H⋯π inter-actions are observed in the crystal structure.

Entities:  

Year:  2011        PMID: 21522374      PMCID: PMC3052169          DOI: 10.1107/S1600536811004582

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the title compound see: Lamani et al. (2009 ▶). For the biological activity of benzisoxazole derivatives, see: Priya et al. (2005 ▶). For the use of five-membered heterocyclic ring 1,3,4-thia­diazo­les in the design of compounds, see: Katritzky (1984) ▶; Diamond & Sevrain (2003a ▶,b ▶); Nakao et al. (2002a ▶,b ▶). For related structures, see: Sun & Zhang (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. 1995 ▶)

Experimental

Crystal data

C18H11ClN4OS M = 366.83 Monoclinic, a = 38.419 (7) Å b = 5.7761 (10) Å c = 14.772 (3) Å β = 108.004 (5)° V = 3117.5 (10) Å3 Z = 8 Mo Kα radiation μ = 0.39 mm−1 T = 123 K 0.18 × 0.16 × 0.16 mm

Data collection

Bruker SMART APEX CCD detector diffractometer Absorption correction: multi-scan Bruker Smart Apex T min = 0.933, T max = 0.940 8822 measured reflections 3379 independent reflections 2587 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.185 S = 1.31 3379 reflections 226 parameters H-atom parameters constrained Δρmax = 0.74 e Å−3 Δρmin = −0.58 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and CAMERON (Watkin et al., 1996) ▶; software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811004582/gw2098sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004582/gw2098Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H11ClN4OSF(000) = 1504
Mr = 366.83Dx = 1.563 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3379 reflections
a = 38.419 (7) Åθ = 2.2–27.0°
b = 5.7761 (10) ŵ = 0.39 mm1
c = 14.772 (3) ÅT = 123 K
β = 108.004 (5)°Block, yellow
V = 3117.5 (10) Å30.18 × 0.16 × 0.16 mm
Z = 8
Bruker SMART APEX CCD detector diffractometer3379 independent reflections
Radiation source: fine-focus sealed tube2587 reflections with I > 2σ(I)
graphiteRint = 0.051
ω scansθmax = 27.0°, θmin = 2.2°
Absorption correction: multi-scan Bruker Smart Apexh = −46→48
Tmin = 0.933, Tmax = 0.940k = −6→7
8822 measured reflectionsl = −18→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.185H-atom parameters constrained
S = 1.31w = 1/[σ2(Fo2) + (0.0894P)2] where P = (Fo2 + 2Fc2)/3
3379 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.74 e Å3
0 restraintsΔρmin = −0.58 e Å3
Experimental. The compound was synthesized by following the procedure given in Lamani et al., (2009)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.19871 (8)0.2236 (5)0.1424 (2)0.0151 (6)
C20.16451 (8)0.1564 (5)0.1657 (2)0.0183 (7)
H2A0.15650.00710.13660.022*
H2B0.17110.13550.23410.022*
C30.13263 (8)0.3171 (5)0.1363 (2)0.0166 (7)
C40.25323 (8)0.4023 (5)0.1246 (2)0.0160 (7)
C50.28417 (8)0.0835 (6)0.1177 (2)0.0167 (6)
H50.2910−0.07040.11570.020*
C60.30436 (8)0.2790 (5)0.1142 (2)0.0149 (6)
C70.34193 (8)0.2930 (5)0.1098 (2)0.0148 (7)
C80.35464 (9)0.4896 (5)0.0746 (2)0.0181 (7)
H80.33890.61390.05270.022*
C90.39034 (9)0.5024 (5)0.0718 (2)0.0192 (7)
H90.39860.63400.04840.023*
C100.41322 (8)0.3176 (6)0.1039 (2)0.0183 (7)
C110.40183 (9)0.1192 (6)0.1396 (2)0.0206 (7)
H110.4178−0.00380.16160.025*
C120.36610 (8)0.1082 (6)0.1418 (2)0.0178 (7)
H120.3580−0.02440.16490.021*
C130.07777 (9)0.4766 (5)0.1117 (2)0.0176 (7)
C140.04157 (9)0.5159 (6)0.1076 (2)0.0209 (7)
H140.02920.65190.08340.025*
C150.02526 (9)0.3370 (6)0.1424 (2)0.0219 (7)
H150.00100.35190.14070.026*
C160.04440 (8)0.1336 (6)0.1800 (3)0.0212 (7)
H160.03260.01880.20360.025*
C170.08036 (8)0.1001 (6)0.1828 (2)0.0178 (7)
H170.0928−0.03520.20740.021*
C180.09718 (8)0.2764 (5)0.1474 (2)0.0166 (7)
O10.09977 (6)0.6281 (4)0.08271 (17)0.0222 (5)
N10.28445 (7)0.4813 (4)0.11762 (19)0.0161 (6)
N20.22129 (7)0.0628 (5)0.13533 (19)0.0171 (6)
N30.25177 (7)0.1673 (4)0.12454 (19)0.0158 (6)
N40.13496 (7)0.5207 (5)0.1006 (2)0.0208 (6)
S10.21240 (2)0.51078 (13)0.13431 (6)0.0182 (2)
Cl10.45843 (2)0.33439 (15)0.10073 (6)0.0267 (3)
U11U22U33U12U13U23
C10.0141 (14)0.0126 (15)0.0175 (16)0.0005 (12)0.0032 (13)0.0015 (12)
C20.0170 (15)0.0154 (16)0.0248 (18)0.0016 (12)0.0095 (14)0.0034 (13)
C30.0197 (15)0.0141 (15)0.0155 (16)−0.0028 (12)0.0049 (13)−0.0002 (12)
C40.0202 (15)0.0121 (15)0.0152 (16)0.0008 (12)0.0047 (13)−0.0006 (12)
C50.0152 (14)0.0138 (15)0.0214 (16)0.0032 (12)0.0062 (13)0.0002 (13)
C60.0131 (14)0.0162 (16)0.0153 (16)−0.0011 (12)0.0042 (13)0.0011 (12)
C70.0137 (14)0.0156 (16)0.0159 (16)−0.0034 (12)0.0054 (12)−0.0023 (12)
C80.0206 (16)0.0157 (16)0.0191 (17)0.0021 (12)0.0078 (14)0.0006 (12)
C90.0252 (17)0.0161 (17)0.0176 (17)−0.0052 (13)0.0086 (14)−0.0021 (12)
C100.0142 (14)0.0231 (17)0.0179 (17)−0.0048 (12)0.0051 (13)−0.0056 (13)
C110.0231 (16)0.0177 (17)0.0220 (18)0.0049 (13)0.0084 (14)−0.0019 (13)
C120.0193 (15)0.0169 (16)0.0178 (17)0.0012 (13)0.0067 (13)0.0014 (13)
C130.0190 (16)0.0158 (16)0.0204 (17)−0.0004 (12)0.0096 (14)0.0009 (13)
C140.0194 (16)0.0200 (17)0.0220 (18)0.0035 (13)0.0042 (14)0.0000 (13)
C150.0177 (16)0.0283 (19)0.0209 (18)−0.0017 (13)0.0077 (14)−0.0013 (14)
C160.0149 (15)0.0216 (17)0.0276 (19)−0.0029 (13)0.0075 (14)0.0010 (14)
C170.0172 (15)0.0163 (16)0.0202 (17)0.0005 (12)0.0060 (13)0.0023 (13)
C180.0136 (14)0.0178 (16)0.0183 (16)0.0011 (12)0.0049 (13)−0.0003 (13)
O10.0200 (11)0.0167 (12)0.0325 (14)0.0044 (9)0.0120 (11)0.0055 (10)
N10.0114 (12)0.0167 (14)0.0206 (14)0.0006 (10)0.0054 (11)−0.0008 (11)
N20.0127 (12)0.0178 (14)0.0211 (15)−0.0055 (10)0.0059 (11)0.0001 (11)
N30.0174 (13)0.0115 (13)0.0189 (15)−0.0012 (10)0.0059 (11)0.0013 (10)
N40.0147 (13)0.0244 (16)0.0251 (16)0.0015 (11)0.0087 (12)0.0010 (12)
S10.0184 (4)0.0124 (4)0.0257 (5)−0.0008 (3)0.0096 (4)−0.0007 (3)
Cl10.0177 (4)0.0329 (5)0.0318 (5)−0.0021 (3)0.0110 (4)−0.0057 (4)
C1—N21.297 (4)C9—C101.371 (4)
C1—C21.508 (4)C9—H90.9300
C1—S11.756 (3)C10—C111.387 (5)
C2—C31.490 (4)C10—Cl11.755 (3)
C2—H2A0.9700C11—C121.384 (4)
C2—H2B0.9700C11—H110.9300
C3—N41.304 (4)C12—H120.9300
C3—C181.440 (4)C13—O11.374 (4)
C4—N11.316 (4)C13—C141.392 (4)
C4—N31.358 (4)C13—C181.389 (4)
C4—S11.736 (3)C14—C151.387 (5)
C5—C61.380 (4)C14—H140.9300
C5—N31.369 (4)C15—C161.406 (5)
C5—H50.9300C15—H150.9300
C6—N11.406 (4)C16—C171.383 (4)
C6—C71.468 (4)C16—H160.9300
C7—C121.398 (4)C17—C181.392 (4)
C7—C81.398 (4)C17—H170.9300
C8—C91.387 (4)O1—N41.436 (3)
C8—H80.9300N2—N31.370 (3)
N2—C1—C2119.1 (3)C12—C11—C10118.5 (3)
N2—C1—S1116.7 (2)C12—C11—H11120.7
C2—C1—S1124.0 (2)C10—C11—H11120.7
C3—C2—C1117.9 (3)C11—C12—C7121.1 (3)
C3—C2—H2A107.8C11—C12—H12119.4
C1—C2—H2A107.8C7—C12—H12119.4
C3—C2—H2B107.8O1—C13—C14125.8 (3)
C1—C2—H2B107.8O1—C13—C18109.8 (3)
H2A—C2—H2B107.2C14—C13—C18124.4 (3)
N4—C3—C18112.3 (3)C13—C14—C15115.0 (3)
N4—C3—C2121.8 (3)C13—C14—H14122.5
C18—C3—C2125.9 (3)C15—C14—H14122.5
N1—C4—N3112.7 (3)C14—C15—C16121.9 (3)
N1—C4—S1138.5 (3)C14—C15—H15119.1
N3—C4—S1108.8 (2)C16—C15—H15119.1
C6—C5—N3104.3 (3)C17—C16—C15121.6 (3)
C6—C5—H5127.8C17—C16—H16119.2
N3—C5—H5127.8C15—C16—H16119.2
C5—C6—N1111.2 (3)C16—C17—C18117.5 (3)
C5—C6—C7128.2 (3)C16—C17—H17121.3
N1—C6—C7120.6 (3)C18—C17—H17121.3
C12—C7—C8118.3 (3)C17—C18—C13119.7 (3)
C12—C7—C6120.2 (3)C17—C18—C3136.7 (3)
C8—C7—C6121.5 (3)C13—C18—C3103.7 (3)
C9—C8—C7121.1 (3)C13—O1—N4107.6 (2)
C9—C8—H8119.4C4—N1—C6103.5 (2)
C7—C8—H8119.4C1—N2—N3108.1 (3)
C10—C9—C8118.8 (3)C4—N3—N2118.5 (3)
C10—C9—H9120.6C4—N3—C5108.4 (3)
C8—C9—H9120.6N2—N3—C5133.0 (3)
C9—C10—C11122.1 (3)C3—N4—O1106.6 (2)
C9—C10—Cl1118.8 (2)C4—S1—C187.82 (14)
C11—C10—Cl1119.1 (2)
N2—C1—C2—C3−155.9 (3)O1—C13—C18—C3−0.9 (3)
S1—C1—C2—C330.1 (4)C14—C13—C18—C3179.8 (3)
C1—C2—C3—N4−7.1 (5)N4—C3—C18—C17−177.9 (4)
C1—C2—C3—C18176.2 (3)C2—C3—C18—C17−0.9 (6)
N3—C5—C6—N1−0.8 (3)N4—C3—C18—C131.6 (4)
N3—C5—C6—C7177.9 (3)C2—C3—C18—C13178.6 (3)
C5—C6—C7—C12−22.8 (5)C14—C13—O1—N4179.2 (3)
N1—C6—C7—C12155.8 (3)C18—C13—O1—N40.0 (3)
C5—C6—C7—C8157.7 (3)N3—C4—N1—C6−0.8 (3)
N1—C6—C7—C8−23.7 (4)S1—C4—N1—C6178.9 (3)
C12—C7—C8—C9−0.3 (5)C5—C6—N1—C41.0 (3)
C6—C7—C8—C9179.2 (3)C7—C6—N1—C4−177.8 (3)
C7—C8—C9—C100.2 (5)C2—C1—N2—N3−173.3 (3)
C8—C9—C10—C11−0.3 (5)S1—C1—N2—N31.1 (3)
C8—C9—C10—Cl1−179.8 (2)N1—C4—N3—N2177.4 (3)
C9—C10—C11—C120.5 (5)S1—C4—N3—N2−2.5 (3)
Cl1—C10—C11—C12180.0 (2)N1—C4—N3—C50.3 (4)
C10—C11—C12—C7−0.7 (5)S1—C4—N3—C5−179.5 (2)
C8—C7—C12—C110.6 (5)C1—N2—N3—C40.9 (4)
C6—C7—C12—C11−179.0 (3)C1—N2—N3—C5177.1 (3)
O1—C13—C14—C15−179.3 (3)C6—C5—N3—C40.3 (3)
C18—C13—C14—C15−0.1 (5)C6—C5—N3—N2−176.1 (3)
C13—C14—C15—C160.9 (5)C18—C3—N4—O1−1.7 (4)
C14—C15—C16—C17−1.1 (5)C2—C3—N4—O1−178.8 (3)
C15—C16—C17—C180.4 (5)C13—O1—N4—C31.1 (3)
C16—C17—C18—C130.4 (5)N1—C4—S1—C1−177.4 (4)
C16—C17—C18—C3179.8 (4)N3—C4—S1—C12.4 (2)
O1—C13—C18—C17178.7 (3)N2—C1—S1—C4−2.1 (3)
C14—C13—C18—C17−0.6 (5)C2—C1—S1—C4172.1 (3)
Cg1 and Cg2 are the centroids of the C7–C12 and C13–C18 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C9—H9···O1i0.932.393.232 (4)150
C2—H2B···N1ii0.972.493.352 (4)148
C5—H5···N1iii0.932.603.478 (4)157
C17—H17···Cg1iv0.932.783.470 (4)131
C11—H11···Cg2iv0.932.933.548 (4)126
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C7–C12 and C13–C18 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9⋯O1i0.932.393.232 (4)150
C2—H2B⋯N1ii0.972.493.352 (4)148
C5—H5⋯N1iii0.932.603.478 (4)157
C17—H17⋯Cg1iv0.932.783.470 (4)131
C11—H11⋯Cg2iv0.932.933.548 (4)126

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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