Literature DB >> 21522707

6-(4-Chloro-phen-yl)-2-isobutyl-imidazo[2,1-b][1,3,4]thia-diazole.

Hoong-Kun Fun, Madhukar Hemamalini, D Jagadeesh Prasad, G K Nagaraja, V V Anitha.   

Abstract

In the title compound, C(14)H(14)ClN(3)S, the imidazo[2,1-b][1,3,4]thia-diazole system is essentially planar, with a maximum deviation of 0.006 (2) Å. The dihedral angle between the imidazo[2,1-b][1,3,4]thia-diazole and chloro-phenyl rings is 5.07 (8)°. In the crystal, there are no classical hydrogen bonds but stabilization is provided by weak π-π [centroid-centroid distance = 3.5697 (11) Å] and C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21522707      PMCID: PMC3050343          DOI: 10.1107/S1600536810052621

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of imidazo [2,1-b]-1,3,4-thia­diazole derivatives, see: Terzioglu & Gursoy (2003 ▶); Kolavi et al. (2006 ▶); Gadad et al. (2000 ▶); Andotra et al. (1997 ▶); Khazi et al. (1996 ▶); Andreani et al. (1982 ▶,1987 ▶,1991 ▶); Eberle & Robert (1977 ▶).

Experimental

Crystal data

C14H14ClN3S M = 291.79 Monoclinic, a = 5.7552 (1) Å b = 26.4052 (5) Å c = 9.7662 (2) Å β = 101.388 (1)° V = 1454.92 (5) Å3 Z = 4 Mo Kα radiation μ = 0.40 mm−1 T = 296 K 0.47 × 0.31 × 0.28 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009) ▶ T min = 0.835, T max = 0.897 12320 measured reflections 3353 independent reflections 2646 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.135 S = 1.05 3353 reflections 172 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810052621/ng5089sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052621/ng5089Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H14ClN3SF(000) = 608
Mr = 291.79Dx = 1.332 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5357 reflections
a = 5.7552 (1) Åθ = 2.3–28.5°
b = 26.4052 (5) ŵ = 0.40 mm1
c = 9.7662 (2) ÅT = 296 K
β = 101.388 (1)°Block, colourless
V = 1454.92 (5) Å30.47 × 0.31 × 0.28 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3353 independent reflections
Radiation source: fine-focus sealed tube2646 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 27.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −6→7
Tmin = 0.835, Tmax = 0.897k = −23→34
12320 measured reflectionsl = −12→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0605P)2 + 0.4615P] where P = (Fo2 + 2Fc2)/3
3353 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.79047 (16)−0.15309 (3)0.31411 (7)0.0936 (3)
S10.87829 (9)0.11339 (2)0.99277 (7)0.0661 (2)
N10.8370 (3)0.03334 (6)0.79472 (18)0.0536 (4)
N21.1813 (3)0.05331 (6)0.93125 (17)0.0517 (4)
N31.3144 (3)0.08204 (7)1.03504 (19)0.0609 (5)
C10.7404 (4)−0.04026 (8)0.5763 (2)0.0544 (5)
H1A0.6230−0.01820.59310.065*
C20.6859 (4)−0.07545 (8)0.4702 (2)0.0610 (5)
H2A0.5347−0.07670.41470.073*
C30.8587 (4)−0.10854 (8)0.4479 (2)0.0617 (5)
C41.0837 (4)−0.10677 (9)0.5281 (3)0.0686 (6)
H4A1.1991−0.12940.51160.082*
C51.1370 (4)−0.07123 (8)0.6331 (2)0.0613 (5)
H5A1.2889−0.07010.68770.074*
C60.9657 (3)−0.03694 (7)0.65853 (19)0.0471 (4)
C71.0177 (3)0.00199 (7)0.76767 (19)0.0468 (4)
C80.9462 (3)0.06335 (7)0.8937 (2)0.0507 (4)
C91.1782 (4)0.11490 (8)1.0758 (2)0.0578 (5)
C101.2301 (3)0.01388 (8)0.8507 (2)0.0544 (5)
H10A1.3760−0.00150.85220.065*
C111.2613 (5)0.15173 (9)1.1910 (2)0.0731 (6)
H11A1.42910.14611.22610.088*
H11B1.17950.14451.26660.088*
C121.2254 (5)0.20690 (10)1.1527 (3)0.0813 (7)
H12A1.05880.21181.10820.098*
C131.2777 (9)0.23946 (14)1.2842 (4)0.1384 (16)
H13A1.17480.22971.34590.208*
H13B1.25160.27451.25910.208*
H13C1.43970.23471.33030.208*
C141.3764 (8)0.22228 (13)1.0505 (4)0.1297 (15)
H14A1.34000.20110.96910.195*
H14B1.54070.21851.09300.195*
H14C1.34480.25701.02400.195*
U11U22U33U12U13U23
Cl10.1320 (7)0.0746 (4)0.0756 (4)0.0014 (4)0.0239 (4)−0.0144 (3)
S10.0529 (3)0.0606 (3)0.0842 (4)0.0008 (2)0.0124 (3)−0.0096 (3)
N10.0371 (8)0.0555 (10)0.0668 (10)0.0018 (7)0.0068 (7)0.0014 (8)
N20.0405 (8)0.0511 (9)0.0604 (9)−0.0010 (7)0.0024 (7)0.0085 (7)
N30.0512 (9)0.0583 (10)0.0671 (11)−0.0053 (8)−0.0031 (8)0.0042 (8)
C10.0496 (10)0.0545 (11)0.0571 (11)0.0090 (8)0.0055 (8)0.0064 (9)
C20.0614 (12)0.0627 (13)0.0556 (11)0.0045 (10)0.0034 (9)0.0072 (10)
C30.0819 (15)0.0540 (12)0.0523 (11)0.0005 (10)0.0207 (10)0.0066 (9)
C40.0682 (14)0.0641 (14)0.0796 (15)0.0138 (11)0.0292 (12)0.0028 (11)
C50.0460 (10)0.0638 (13)0.0753 (14)0.0076 (9)0.0149 (10)0.0042 (11)
C60.0441 (9)0.0481 (10)0.0503 (10)0.0030 (7)0.0122 (7)0.0138 (8)
C70.0386 (9)0.0475 (10)0.0541 (10)0.0027 (7)0.0088 (7)0.0129 (8)
C80.0392 (9)0.0492 (10)0.0637 (11)−0.0002 (8)0.0103 (8)0.0074 (9)
C90.0599 (11)0.0516 (11)0.0594 (12)−0.0095 (9)0.0055 (9)0.0108 (9)
C100.0398 (9)0.0570 (11)0.0650 (12)0.0078 (8)0.0069 (8)0.0076 (9)
C110.0872 (17)0.0662 (14)0.0625 (13)−0.0168 (12)0.0068 (12)0.0047 (11)
C120.0844 (17)0.0661 (15)0.0928 (18)−0.0077 (13)0.0157 (14)−0.0147 (13)
C130.193 (4)0.103 (3)0.133 (3)−0.032 (3)0.066 (3)−0.052 (2)
C140.208 (4)0.088 (2)0.104 (2)−0.059 (2)0.055 (3)−0.0064 (18)
Cl1—C31.744 (2)C5—H5A0.9300
S1—C81.727 (2)C6—C71.468 (3)
S1—C91.757 (2)C7—C101.363 (3)
N1—C81.311 (3)C9—C111.492 (3)
N1—C71.395 (2)C10—H10A0.9300
N2—C81.356 (2)C11—C121.508 (3)
N2—C101.367 (3)C11—H11A0.9700
N2—N31.372 (2)C11—H11B0.9700
N3—C91.284 (3)C12—C141.503 (4)
C1—C21.381 (3)C12—C131.525 (4)
C1—C61.387 (3)C12—H12A0.9800
C1—H1A0.9300C13—H13A0.9600
C2—C31.373 (3)C13—H13B0.9600
C2—H2A0.9300C13—H13C0.9600
C3—C41.376 (3)C14—H14A0.9600
C4—C51.379 (3)C14—H14B0.9600
C4—H4A0.9300C14—H14C0.9600
C5—C61.397 (3)
C8—S1—C988.02 (10)N3—C9—C11123.3 (2)
C8—N1—C7103.40 (15)N3—C9—S1116.48 (16)
C8—N2—C10107.48 (16)C11—C9—S1120.14 (18)
C8—N2—N3118.26 (17)C7—C10—N2104.82 (16)
C10—N2—N3134.26 (16)C7—C10—H10A127.6
C9—N3—N2108.46 (16)N2—C10—H10A127.6
C2—C1—C6121.66 (19)C9—C11—C12115.8 (2)
C2—C1—H1A119.2C9—C11—H11A108.3
C6—C1—H1A119.2C12—C11—H11A108.3
C3—C2—C1118.9 (2)C9—C11—H11B108.3
C3—C2—H2A120.6C12—C11—H11B108.3
C1—C2—H2A120.6H11A—C11—H11B107.4
C2—C3—C4121.2 (2)C14—C12—C11110.9 (3)
C2—C3—Cl1118.99 (18)C14—C12—C13111.3 (3)
C4—C3—Cl1119.80 (18)C11—C12—C13110.0 (3)
C3—C4—C5119.5 (2)C14—C12—H12A108.2
C3—C4—H4A120.2C11—C12—H12A108.2
C5—C4—H4A120.2C13—C12—H12A108.2
C4—C5—C6120.8 (2)C12—C13—H13A109.5
C4—C5—H5A119.6C12—C13—H13B109.5
C6—C5—H5A119.6H13A—C13—H13B109.5
C1—C6—C5117.93 (19)C12—C13—H13C109.5
C1—C6—C7119.84 (17)H13A—C13—H13C109.5
C5—C6—C7122.23 (17)H13B—C13—H13C109.5
C10—C7—N1111.42 (17)C12—C14—H14A109.5
C10—C7—C6128.53 (17)C12—C14—H14B109.5
N1—C7—C6120.03 (15)H14A—C14—H14B109.5
N1—C8—N2112.88 (17)C12—C14—H14C109.5
N1—C8—S1138.34 (15)H14A—C14—H14C109.5
N2—C8—S1108.78 (14)H14B—C14—H14C109.5
C8—N2—N3—C9−0.8 (2)C7—N1—C8—S1179.56 (18)
C10—N2—N3—C9179.7 (2)C10—N2—C8—N10.2 (2)
C6—C1—C2—C31.3 (3)N3—N2—C8—N1−179.44 (16)
C1—C2—C3—C4−0.7 (3)C10—N2—C8—S1−179.60 (13)
C1—C2—C3—Cl1179.91 (16)N3—N2—C8—S10.8 (2)
C2—C3—C4—C50.2 (3)C9—S1—C8—N1179.9 (2)
Cl1—C3—C4—C5179.57 (17)C9—S1—C8—N2−0.42 (14)
C3—C4—C5—C6−0.3 (3)N2—N3—C9—C11178.09 (18)
C2—C1—C6—C5−1.4 (3)N2—N3—C9—S10.4 (2)
C2—C1—C6—C7178.29 (18)C8—S1—C9—N3−0.01 (17)
C4—C5—C6—C10.9 (3)C8—S1—C9—C11−177.76 (18)
C4—C5—C6—C7−178.82 (19)N1—C7—C10—N20.1 (2)
C8—N1—C7—C100.0 (2)C6—C7—C10—N2178.64 (17)
C8—N1—C7—C6−178.69 (16)C8—N2—C10—C7−0.1 (2)
C1—C6—C7—C10−174.21 (19)N3—N2—C10—C7179.36 (19)
C5—C6—C7—C105.5 (3)N3—C9—C11—C12122.0 (3)
C1—C6—C7—N14.2 (3)S1—C9—C11—C12−60.4 (3)
C5—C6—C7—N1−176.07 (17)C9—C11—C12—C14−66.3 (3)
C7—N1—C8—N2−0.1 (2)C9—C11—C12—C13170.2 (3)
Cg3 is the centroid of the C1–C6 ring.
D—H···AD—HH···AD···AD—H···A
C11—H11B···Cg3i0.972.703.544 (2)145
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11BCg3i0.972.703.544 (2)145

Symmetry code: (i) .

  6 in total

1.  Synthesis, anticonvulsant and analgesic activities of some 6-substituted imidazo(2,1-b)-1,3,4-thiadiazole-2-sulfonamides and their 5-bromo derivatives.

Authors:  I A Khazi; C S Mahajanshetti; A K Gadad; A D Tarnalli; C M Sultanpur
Journal:  Arzneimittelforschung       Date:  1996-10

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and antibacterial activity of some 5-guanylhydrazone/thiocyanato-6-arylimidazo[2,1-b]-1,3, 4-thiadiazole-2-sulfonamide derivatives.

Authors:  A K Gadad; C S Mahajanshetti; S Nimbalkar; A Raichurkar
Journal:  Eur J Med Chem       Date:  2000-09       Impact factor: 6.514

4.  Synthesis and evaluation of antitubercular activity of imidazo[2,1-b][1,3,4]thiadiazole derivatives.

Authors:  Gundurao Kolavi; Vinayak Hegde; Imtiyaz ahmed Khazi; Pramod Gadad
Journal:  Bioorg Med Chem       Date:  2006-01-06       Impact factor: 3.641

5.  Synthesis and anticancer evaluation of some new hydrazone derivatives of 2,6-dimethylimidazo[2,1-b][1,3,4]thiadiazole-5-carbohydrazide.

Authors:  Nalan Terzioglu; Aysel Gürsoy
Journal:  Eur J Med Chem       Date:  2003 Jul-Aug       Impact factor: 6.514

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  1 in total

1.  6-(3-Chloro-phen-yl)imidazo[2,1-b][1,3,4]thia-diazole.

Authors:  A S Praveen; Jerry P Jasinski; Shannon T Krauss; H S Yathirajan; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-12
  1 in total

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