Literature DB >> 23469896

Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities.

Robert L Hettich1, Chongle Pan, Karuna Chourey, Richard J Giannone.   

Abstract

The availability of extensive genome information for many different microbes, including unculturable species in mixed communities from environmental samples, has enabled systems-biology interrogation by providing a means to access genomic, transcriptomic, and proteomic information. To this end, metaproteomics exploits the power of high-performance mass spectrometry for extensive characterization of the complete suite of proteins expressed by a microbial community in an environmental sample.

Entities:  

Mesh：

Substances：

Year:  2013        PMID： 23469896      PMCID： PMC3696428          DOI： 10.1021/ac303053e

Source DB:  PubMed          Journal:  Anal Chem        ISSN： 0003-2700            Impact factor:   6.986


  98 in total

1.  Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.

Authors:  Rachel Mackelprang; Mark P Waldrop; Kristen M DeAngelis; Maude M David; Krystle L Chavarria; Steven J Blazewicz; Edward M Rubin; Janet K Jansson
Journal:  Nature       Date:  2011-11-06       Impact factor: 49.962

2.  Reporting protein identification data: the next generation of guidelines.

Authors:  Ralph A Bradshaw; Alma L Burlingame; Steven Carr; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2006-05       Impact factor: 5.911

3.  Ultrahigh-pressure liquid chromatography using a 1-mm id column packed with 1.5-microm porous particles.

Authors:  Jason A Anspach; Todd D Maloney; Luis A Colón
Journal:  J Sep Sci       Date:  2007-05       Impact factor: 3.645

Review 4.  Metagenomics: Concept, methodology, ecological inference and recent advances.

Authors:  Jagtar Singh; Arvind Behal; Neha Singla; Amit Joshi; Niti Birbian; Sukhdeep Singh; Vandana Bali; Navneet Batra
Journal:  Biotechnol J       Date:  2009-04       Impact factor: 4.677

5.  Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.

Authors:  Sarah M Sowell; Larry J Wilhelm; Angela D Norbeck; Mary S Lipton; Carrie D Nicora; Douglas F Barofsky; Craig A Carlson; Richard D Smith; Stephen J Giovanonni
Journal:  ISME J       Date:  2008-09-04       Impact factor: 10.302

6.  Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community.

Authors:  Ryan S Mueller; Brian D Dill; Chongle Pan; Christopher P Belnap; Brian C Thomas; Nathan C VerBerkmoes; Robert L Hettich; Jillian F Banfield
Journal:  Environ Microbiol       Date:  2011-04-25       Impact factor: 5.491

7.  Molecular dynamics of the Shewanella oneidensis response to chromate stress.

Authors:  Steven D Brown; Melissa R Thompson; Nathan C Verberkmoes; Karuna Chourey; Manesh Shah; Jizhong Zhou; Robert L Hettich; Dorothea K Thompson
Journal:  Mol Cell Proteomics       Date:  2006-03-08       Impact factor: 5.911

8.  Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium.

Authors:  Martin Taubert; Carsten Vogt; Tesfaye Wubet; Sabine Kleinsteuber; Mika T Tarkka; Hauke Harms; François Buscot; Hans-Hermann Richnow; Martin von Bergen; Jana Seifert
Journal:  ISME J       Date:  2012-07-12       Impact factor: 10.302

9.  Community proteomics of a natural microbial biofilm.

Authors:  Rachna J Ram; Nathan C Verberkmoes; Michael P Thelen; Gene W Tyson; Brett J Baker; Robert C Blake; Manesh Shah; Robert L Hettich; Jillian F Banfield
Journal:  Science       Date:  2005-05-05       Impact factor: 47.728

10.  Comparative metaproteomic analysis on consecutively Rehmannia glutinosa-monocultured rhizosphere soil.

Authors:  Linkun Wu; Haibin Wang; Zhixing Zhang; Rui Lin; Zhongyi Zhang; Wenxiong Lin
Journal:  PLoS One       Date:  2011-05-31       Impact factor: 3.240
View more
  48 in total

1.  A previously uncharacterized, nonphotosynthetic member of the Chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode.

Authors:  Zheng Wang; Dagmar H Leary; Anthony P Malanoski; Robert W Li; W Judson Hervey; Brian J Eddie; Gabrielle S Tender; Shelley G Yanosky; Gary J Vora; Leonard M Tender; Baochuan Lin; Sarah M Strycharz-Glaven
Journal:  Appl Environ Microbiol       Date:  2014-11-14       Impact factor: 4.792

2.  An Aquatic Microbial Metaproteomics Workflow: From Cells to Tryptic Peptides Suitable for Tandem Mass Spectrometry-based Analysis.

Authors:  David Colatriano; David A Walsh
Journal:  J Vis Exp       Date:  2015-09-15       Impact factor: 1.355

3.  Soil microbial community responses to a decade of warming as revealed by comparative metagenomics.

Authors:  Chengwei Luo; Luis M Rodriguez-R; Eric R Johnston; Liyou Wu; Lei Cheng; Kai Xue; Qichao Tu; Ye Deng; Zhili He; Jason Zhou Shi; Mengting Maggie Yuan; Rebecca A Sherry; Dejun Li; Yiqi Luo; Edward A G Schuur; Patrick Chain; James M Tiedje; Jizhong Zhou; Konstantinos T Konstantinidis
Journal:  Appl Environ Microbiol       Date:  2013-12-27       Impact factor: 4.792

Review 4.  Proteomics in Inflammatory Bowel Disease: Approach Using Animal Models.

Authors:  Fadi H Mourad; Yunki Yau; Valerie C Wasinger; Rupert W Leong
Journal:  Dig Dis Sci       Date:  2017-07-17       Impact factor: 3.199

Review 5.  Metagenomic applications in environmental monitoring and bioremediation.

Authors:  Stephen M Techtmann; Terry C Hazen
Journal:  J Ind Microbiol Biotechnol       Date:  2016-08-24       Impact factor: 3.346

6.  A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane.

Authors:  Henning Schiebenhoefer; Kay Schallert; Bernhard Y Renard; Kathrin Trappe; Emanuel Schmid; Dirk Benndorf; Katharina Riedel; Thilo Muth; Stephan Fuchs
Journal:  Nat Protoc       Date:  2020-08-28       Impact factor: 13.491

7.  Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case.

Authors:  Jacque C Young; Chongle Pan; Rachel M Adams; Brandon Brooks; Jillian F Banfield; Michael J Morowitz; Robert L Hettich
Journal:  Proteomics       Date:  2015-07-21       Impact factor: 3.984

Review 8.  The Role of the Gut Microbiome in Colorectal Cancer.

Authors:  Grace Y Chen
Journal:  Clin Colon Rectal Surg       Date:  2018-04-01

Review 9.  Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota.

Authors:  Weili Xiong; Paul E Abraham; Zhou Li; Chongle Pan; Robert L Hettich
Journal:  Proteomics       Date:  2015-05-28       Impact factor: 3.984

Review 10.  Proteomics and Metaproteomics Add Functional, Taxonomic and Biomass Dimensions to Modeling the Ecosystem at the Mucosal-luminal Interface.

Authors:  Leyuan Li; Daniel Figeys
Journal:  Mol Cell Proteomics       Date:  2020-06-24       Impact factor: 5.911
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.