Literature DB >> 23431179

Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis.

Lasse Jenner1, Agata L Starosta, Daniel S Terry, Aleksandra Mikolajka, Liudmila Filonava, Marat Yusupov, Scott C Blanchard, Daniel N Wilson, Gulnara Yusupova.   

Abstract

Here we present an X-ray crystallography structure of the clinically relevant tigecycline antibiotic bound to the 70S ribosome. Our structural and biochemical analysis indicate that the enhanced potency of tigecycline results from a stacking interaction with nucleobase C1054 within the decoding site of the ribosome. Single-molecule fluorescence resonance energy transfer studies reveal that, during decoding, tigecycline inhibits the initial codon recognition step of tRNA accommodation and prevents rescue by the tetracycline-resistance protein TetM.

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Year:  2013        PMID: 23431179      PMCID: PMC3593886          DOI: 10.1073/pnas.1216691110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

Review 1.  Antibiotics in development targeting protein synthesis.

Authors:  Joyce A Sutcliffe
Journal:  Ann N Y Acad Sci       Date:  2011-12       Impact factor: 5.691

2.  Structural rearrangements of the ribosome at the tRNA proofreading step.

Authors:  Lasse Jenner; Natalia Demeshkina; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2010-08-08       Impact factor: 15.369

3.  Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome.

Authors:  Peter Geggier; Richa Dave; Michael B Feldman; Daniel S Terry; Roger B Altman; James B Munro; Scott C Blanchard
Journal:  J Mol Biol       Date:  2010-04-29       Impact factor: 5.469

4.  Structural aspects of messenger RNA reading frame maintenance by the ribosome.

Authors:  Lasse B Jenner; Natalia Demeshkina; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2010-04-18       Impact factor: 15.369

5.  Differential effects of thiopeptide and orthosomycin antibiotics on translational GTPases.

Authors:  Aleksandra Mikolajka; Hanqing Liu; Yuanwei Chen; Agata L Starosta; Viter Márquez; Marina Ivanova; Barry S Cooperman; Daniel N Wilson
Journal:  Chem Biol       Date:  2011-05-27

6.  Synthesis and antibacterial activity of pentacyclines: a novel class of tetracycline analogs.

Authors:  Cuixiang Sun; Diana K Hunt; Roger B Clark; Denene Lofland; William J O'Brien; Louis Plamondon; Xiao-Yi Xiao
Journal:  J Med Chem       Date:  2011-05-10       Impact factor: 7.446

7.  The structure of the eukaryotic ribosome at 3.0 Å resolution.

Authors:  Adam Ben-Shem; Nicolas Garreau de Loubresse; Sergey Melnikov; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Science       Date:  2011-11-17       Impact factor: 47.728

8.  8-Azatetracyclines: synthesis and evaluation of a novel class of tetracycline antibacterial agents.

Authors:  Roger B Clark; Minsheng He; Corey Fyfe; Denene Lofland; William J O'Brien; Louis Plamondon; Joyce A Sutcliffe; Xiao-Yi Xiao
Journal:  J Med Chem       Date:  2011-02-08       Impact factor: 7.446

9.  Optimal fine φ-slicing for single-photon-counting pixel detectors.

Authors:  Marcus Mueller; Meitian Wang; Clemens Schulze-Briese
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-12-09

10.  Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome.

Authors:  Rebecca M Voorhees; Albert Weixlbaumer; David Loakes; Ann C Kelley; V Ramakrishnan
Journal:  Nat Struct Mol Biol       Date:  2009-04-12       Impact factor: 15.369

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  61 in total

1.  Negamycin induces translational stalling and miscoding by binding to the small subunit head domain of the Escherichia coli ribosome.

Authors:  Nelson B Olivier; Roger B Altman; Jonas Noeske; Gregory S Basarab; Erin Code; Andrew D Ferguson; Ning Gao; Jian Huang; Manuel F Juette; Stephania Livchak; Matthew D Miller; D Bryan Prince; Jamie H D Cate; Ed T Buurman; Scott C Blanchard
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

2.  Structural characterization of an alternative mode of tigecycline binding to the bacterial ribosome.

Authors:  Andreas Schedlbauer; Tatsuya Kaminishi; Borja Ochoa-Lizarralde; Neha Dhimole; Shu Zhou; Jorge P López-Alonso; Sean R Connell; Paola Fucini
Journal:  Antimicrob Agents Chemother       Date:  2015-03-09       Impact factor: 5.191

Review 3.  Ribosome-targeting antibiotics and mechanisms of bacterial resistance.

Authors:  Daniel N Wilson
Journal:  Nat Rev Microbiol       Date:  2014-01       Impact factor: 60.633

4.  Cryo-EM structure of the tetracycline resistance protein TetM in complex with a translating ribosome at 3.9-Å resolution.

Authors:  Stefan Arenz; Fabian Nguyen; Roland Beckmann; Daniel N Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-13       Impact factor: 11.205

5.  Rampant Parasexuality Evolves in a Hospital Pathogen during Antibiotic Selection.

Authors:  Kathryn Beabout; Troy G Hammerstrom; Tim T Wang; Minny Bhatty; Peter J Christie; Gerda Saxer; Yousif Shamoo
Journal:  Mol Biol Evol       Date:  2015-06-09       Impact factor: 16.240

Review 6.  Target protection as a key antibiotic resistance mechanism.

Authors:  Daniel N Wilson; Vasili Hauryliuk; Gemma C Atkinson; Alex J O'Neill
Journal:  Nat Rev Microbiol       Date:  2020-06-25       Impact factor: 60.633

Review 7.  Bacterial Protein Synthesis as a Target for Antibiotic Inhibition.

Authors:  Stefan Arenz; Daniel N Wilson
Journal:  Cold Spring Harb Perspect Med       Date:  2016-09-01       Impact factor: 6.915

8.  Recent Advances in the Rational Design and Optimization of Antibacterial Agents.

Authors:  Jesse A Jones; Kristopher G Virga; Giuseppe Gumina; Kirk E Hevener
Journal:  Medchemcomm       Date:  2016-07-07       Impact factor: 3.597

9.  Decreased Susceptibility to Tigecycline Mediated by a Mutation in mlaA in Escherichia coli Strains.

Authors:  Fang He; Juan Xu; Jianfeng Wang; Qiong Chen; Xiaoting Hua; Ying Fu; Yunsong Yu
Journal:  Antimicrob Agents Chemother       Date:  2016-11-21       Impact factor: 5.191

10.  Mechanism of action of the novel aminomethylcycline antibiotic omadacycline.

Authors:  Michael P Draper; S Weir; A Macone; J Donatelli; C A Trieber; S K Tanaka; Stuart B Levy
Journal:  Antimicrob Agents Chemother       Date:  2013-09-16       Impact factor: 5.191

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