Literature DB >> 23424539

(2S,4R)-2-[(1R)-1-(4-Bromo-phen-yl)-2-nitro-eth-yl]-4-ethyl-cyclo-hexa-none.

Chi-Xiao Zhang1, Yan-Peng Zhang, Ai-Bao Xia.   

Abstract

The crystal structure of the title compound, C(16)H(20)BrNO(3), contains three chiral centers in the configuration 1R,2S,6R. The cyclo-hexane ring is in a chair conformation. In the crystal, mol-ecules are linked by weak C-H⋯O inter-actions, forming chains along the a-axis direction.

Entities:  

Year:  2013        PMID: 23424539      PMCID: PMC3569793          DOI: 10.1107/S1600536813001426

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds, see: Hayashi et al. (2005 ▶); Li et al. (2009 ▶); Xia et al. (2009 ▶); Wu et al. (2011 ▶). For asymmetric Michael addition reactions, see: Luo et al. (2007 ▶). For enanti­oselective organocatalytic Michael additions, see: Peelen et al. (2005 ▶); Ma et al. (2008 ▶).

Experimental

Crystal data

C16H20BrNO3 M = 354.24 Monoclinic, a = 5.6434 (4) Å b = 9.2179 (6) Å c = 16.5472 (9) Å β = 101.782 (3)° V = 842.65 (9) Å3 Z = 2 Mo Kα radiation μ = 2.45 mm−1 T = 296 K 0.52 × 0.31 × 0.18 mm

Data collection

Rigaku R-AXIS RAPID/ZJUG diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.279, T max = 0.644 7234 measured reflections 3277 independent reflections 1619 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.175 S = 1.00 3277 reflections 191 parameters 1 restraint H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack (1983 ▶), 1259 Friedel pairs Flack parameter: 0.03 (2) Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813001426/zq2194sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813001426/zq2194Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813001426/zq2194Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H20BrNO3F(000) = 364
Mr = 354.24Dx = 1.396 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 4682 reflections
a = 5.6434 (4) Åθ = 3.4–27.4°
b = 9.2179 (6) ŵ = 2.45 mm1
c = 16.5472 (9) ÅT = 296 K
β = 101.782 (3)°Platelet, colourless
V = 842.65 (9) Å30.52 × 0.31 × 0.18 mm
Z = 2
Rigaku R-AXIS RAPID/ZJUG diffractometer3277 independent reflections
Radiation source: rotating anode1619 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.071
Detector resolution: 10.00 pixels mm-1θmax = 26.0°, θmin = 3.4°
ω scansh = −6→6
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −11→11
Tmin = 0.279, Tmax = 0.644l = −20→20
7234 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.056w = 1/[σ2(Fo2) + (0.0605P)2 + 0.3P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.175(Δ/σ)max < 0.001
S = 1.00Δρmax = 0.35 e Å3
3277 reflectionsΔρmin = −0.29 e Å3
191 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.072 (8)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1259 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.03 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2312 (11)0.2884 (7)0.1770 (4)0.0563 (15)
H10.07660.33790.17540.068*
C20.4174 (11)0.4066 (6)0.1660 (4)0.0541 (15)
H20.54990.35920.14610.065*
C30.3093 (14)0.5225 (7)0.1030 (4)0.0712 (19)
C40.4813 (15)0.6373 (10)0.0880 (5)0.091 (3)
H4A0.39570.70960.05040.109*
H4B0.60600.59480.06290.109*
C50.5974 (14)0.7093 (9)0.1702 (5)0.090 (2)
H5A0.71900.77780.16050.108*
H5B0.47420.76340.19050.108*
C60.7146 (11)0.6025 (7)0.2361 (5)0.0672 (18)
H60.84460.55330.21560.081*
C70.5264 (10)0.4859 (8)0.2467 (3)0.0582 (14)
H7A0.60310.41530.28720.070*
H7B0.39690.53170.26790.070*
C80.8263 (14)0.6704 (9)0.3179 (5)0.089 (2)
H8A0.88670.59340.35650.107*
H8B0.69990.72060.33870.107*
C91.0317 (16)0.7769 (10)0.3167 (7)0.110 (3)
H9A1.09040.81370.37140.165*
H9B0.97360.85580.28020.165*
H9C1.16070.72820.29780.165*
C100.2948 (10)0.2114 (7)0.2592 (4)0.0522 (14)
C110.4955 (12)0.1193 (7)0.2768 (4)0.0646 (17)
H110.58750.10420.23690.078*
C120.5606 (13)0.0500 (7)0.3524 (5)0.075 (2)
H120.6965−0.00940.36370.090*
C130.4189 (15)0.0708 (8)0.4112 (5)0.076 (2)
C140.2187 (14)0.1583 (8)0.3947 (4)0.0708 (19)
H140.12440.17140.43410.085*
C150.1579 (11)0.2267 (8)0.3194 (4)0.0622 (17)
H150.02060.28510.30850.075*
C160.1937 (11)0.1852 (7)0.1032 (4)0.0616 (17)
H16A0.13940.23990.05270.074*
H16B0.34640.13950.10010.074*
N10.0135 (12)0.0724 (7)0.1101 (4)0.0700 (16)
O10.0953 (10)0.5240 (6)0.0704 (3)0.0925 (19)
O20.0723 (11)−0.0541 (7)0.1111 (4)0.1028 (18)
O3−0.1912 (9)0.1117 (7)0.1163 (3)0.0939 (17)
Br10.5073 (2)−0.02467 (17)0.51442 (5)0.1269 (6)
U11U22U33U12U13U23
C10.058 (3)0.059 (3)0.054 (4)−0.002 (3)0.015 (3)−0.004 (3)
C20.053 (3)0.055 (3)0.056 (3)−0.005 (3)0.015 (3)0.006 (3)
C30.089 (5)0.074 (5)0.053 (4)−0.003 (4)0.019 (3)0.010 (3)
C40.096 (5)0.099 (6)0.074 (5)−0.021 (5)0.007 (4)0.028 (4)
C50.084 (5)0.071 (5)0.120 (7)−0.004 (4)0.028 (5)0.035 (5)
C60.058 (4)0.052 (4)0.091 (5)−0.004 (3)0.012 (4)−0.001 (4)
C70.063 (3)0.050 (3)0.059 (3)0.002 (3)0.008 (3)−0.005 (4)
C80.084 (5)0.076 (5)0.105 (6)−0.013 (4)0.013 (4)−0.015 (4)
C90.087 (5)0.092 (6)0.153 (10)−0.022 (5)0.030 (6)−0.035 (6)
C100.050 (3)0.050 (3)0.056 (4)0.002 (3)0.009 (3)0.005 (3)
C110.072 (4)0.067 (4)0.059 (4)0.004 (4)0.023 (3)0.010 (3)
C120.069 (4)0.061 (4)0.089 (5)0.005 (3)0.000 (4)−0.002 (4)
C130.094 (5)0.069 (4)0.063 (4)−0.006 (4)0.011 (4)−0.015 (4)
C140.085 (5)0.083 (5)0.047 (4)0.001 (4)0.020 (3)−0.003 (3)
C150.062 (4)0.066 (4)0.062 (4)0.001 (4)0.019 (3)0.002 (3)
C160.060 (3)0.074 (5)0.051 (3)−0.011 (3)0.012 (3)−0.008 (4)
N10.077 (4)0.078 (5)0.053 (3)−0.015 (4)0.009 (3)−0.001 (3)
O10.081 (3)0.111 (5)0.077 (3)0.000 (3)−0.003 (3)0.031 (3)
O20.107 (4)0.067 (4)0.128 (5)−0.012 (3)0.007 (3)0.016 (3)
O30.063 (3)0.127 (5)0.097 (4)−0.028 (3)0.030 (3)−0.031 (3)
Br10.1788 (11)0.1258 (9)0.0677 (6)0.0169 (8)0.0050 (5)0.0258 (7)
C1—C101.511 (8)C8—H8A0.9700
C1—C161.528 (8)C8—H8B0.9700
C1—C21.550 (8)C9—H9A0.9600
C1—H10.9800C9—H9B0.9600
C2—C31.530 (8)C9—H9C0.9600
C2—C71.535 (8)C10—C151.387 (8)
C2—H20.9800C10—C111.398 (8)
C3—O11.218 (8)C11—C121.386 (9)
C3—C41.490 (10)C11—H110.9300
C4—C51.536 (12)C12—C131.392 (11)
C4—H4A0.9700C12—H120.9300
C4—H4B0.9700C13—C141.370 (10)
C5—C61.517 (10)C13—Br11.896 (8)
C5—H5A0.9700C14—C151.376 (9)
C5—H5B0.9700C14—H140.9300
C6—C81.506 (10)C15—H150.9300
C6—C71.546 (9)C16—N11.475 (9)
C6—H60.9800C16—H16A0.9700
C7—H7A0.9700C16—H16B0.9700
C7—H7B0.9700N1—O21.212 (9)
C8—C91.522 (11)N1—O31.235 (7)
C10—C1—C16113.3 (5)C6—C8—C9115.9 (8)
C10—C1—C2113.2 (5)C6—C8—H8A108.3
C16—C1—C2109.3 (5)C9—C8—H8A108.3
C10—C1—H1106.9C6—C8—H8B108.3
C16—C1—H1106.9C9—C8—H8B108.3
C2—C1—H1106.9H8A—C8—H8B107.4
C3—C2—C7107.1 (5)C8—C9—H9A109.5
C3—C2—C1112.7 (5)C8—C9—H9B109.5
C7—C2—C1113.2 (5)H9A—C9—H9B109.5
C3—C2—H2107.9C8—C9—H9C109.5
C7—C2—H2107.9H9A—C9—H9C109.5
C1—C2—H2107.9H9B—C9—H9C109.5
O1—C3—C4122.6 (6)C15—C10—C11117.3 (6)
O1—C3—C2122.0 (6)C15—C10—C1122.3 (5)
C4—C3—C2115.3 (6)C11—C10—C1120.4 (5)
C3—C4—C5109.5 (6)C12—C11—C10121.5 (6)
C3—C4—H4A109.8C12—C11—H11119.2
C5—C4—H4A109.8C10—C11—H11119.2
C3—C4—H4B109.8C11—C12—C13118.9 (7)
C5—C4—H4B109.8C11—C12—H12120.6
H4A—C4—H4B108.2C13—C12—H12120.6
C6—C5—C4113.7 (7)C14—C13—C12120.7 (7)
C6—C5—H5A108.8C14—C13—Br1120.5 (6)
C4—C5—H5A108.8C12—C13—Br1118.8 (6)
C6—C5—H5B108.8C15—C14—C13119.6 (7)
C4—C5—H5B108.8C15—C14—H14120.2
H5A—C5—H5B107.7C13—C14—H14120.2
C8—C6—C5114.6 (6)C14—C15—C10122.1 (6)
C8—C6—C7111.0 (6)C14—C15—H15119.0
C5—C6—C7108.9 (5)C10—C15—H15119.0
C8—C6—H6107.3N1—C16—C1111.2 (5)
C5—C6—H6107.3N1—C16—H16A109.4
C7—C6—H6107.3C1—C16—H16A109.4
C2—C7—C6113.3 (5)N1—C16—H16B109.4
C2—C7—H7A108.9C1—C16—H16B109.4
C6—C7—H7A108.9H16A—C16—H16B108.0
C2—C7—H7B108.9O2—N1—O3122.6 (7)
C6—C7—H7B108.9O2—N1—C16119.2 (7)
H7A—C7—H7B107.7O3—N1—C16118.1 (6)
C10—C1—C2—C3−156.6 (5)C16—C1—C10—C15−122.7 (7)
C16—C1—C2—C376.1 (6)C2—C1—C10—C15112.1 (7)
C10—C1—C2—C7−34.9 (7)C16—C1—C10—C1156.5 (8)
C16—C1—C2—C7−162.2 (5)C2—C1—C10—C11−68.7 (8)
C7—C2—C3—O1−120.3 (7)C15—C10—C11—C12−2.2 (9)
C1—C2—C3—O14.8 (9)C1—C10—C11—C12178.6 (6)
C7—C2—C3—C456.5 (8)C10—C11—C12—C131.3 (10)
C1—C2—C3—C4−178.4 (6)C11—C12—C13—C140.0 (11)
O1—C3—C4—C5121.3 (8)C11—C12—C13—Br1179.8 (5)
C2—C3—C4—C5−55.4 (9)C12—C13—C14—C15−0.3 (11)
C3—C4—C5—C653.7 (9)Br1—C13—C14—C15179.9 (6)
C4—C5—C6—C8−179.0 (6)C13—C14—C15—C10−0.7 (11)
C4—C5—C6—C7−54.0 (8)C11—C10—C15—C141.9 (10)
C3—C2—C7—C6−56.0 (7)C1—C10—C15—C14−178.9 (6)
C1—C2—C7—C6179.2 (5)C10—C1—C16—N154.0 (7)
C8—C6—C7—C2−176.6 (5)C2—C1—C16—N1−178.8 (5)
C5—C6—C7—C256.3 (8)C1—C16—N1—O2−120.9 (8)
C5—C6—C8—C9−61.7 (9)C1—C16—N1—O357.6 (7)
C7—C6—C8—C9174.4 (7)
D—H···AD—HH···AD···AD—H···A
C11—H11···O3i0.932.563.478 (9)169
C16—H16B···O3i0.972.583.500 (8)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C11—H11⋯O3i 0.932.563.478 (9)169
C16—H16B⋯O3i 0.972.583.500 (8)158

Symmetry code: (i) .

  7 in total

1.  Diphenylprolinol silyl ethers as efficient organocatalysts for the asymmetric Michael reaction of aldehydes and nitroalkenes.

Authors:  Yujiro Hayashi; Hiroaki Gotoh; Takaaki Hayashi; Mitsuru Shoji
Journal:  Angew Chem Int Ed Engl       Date:  2005-07-04       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Enantioselective organocatalytic Michael additions of aldehydes to enones with imidazolidinones: cocatalyst effects and evidence for an enamine intermediate.

Authors:  Timothy J Peelen; Yonggui Chi; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2005-08-24       Impact factor: 15.419

4.  (S)-2-[(S,E)-4-(4-Chloro-phen-yl)-1-nitro-but-3-en-2-yl]cyclo-hexa-none.

Authors:  Zhaobo Li; Yi Guo; Bailin Li; Shuping Luo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-29

5.  (R)-7-Bromo-2,3,4,4a-tetra-hydro-1H-xanthen-1-one.

Authors:  Ai-Bao Xia; Jie Tang; Jun-Rong Jiang; Yi-Feng Wang; Shu-Ping Luo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

6.  Functionalized chiral ionic liquid catalyzed enantioselective desymmetrizations of prochiral ketones via asymmetric Michael addition reaction.

Authors:  Sanzhong Luo; Long Zhang; Xueling Mi; Yupu Qiao; Jin-Pei Cheng
Journal:  J Org Chem       Date:  2007-11-02       Impact factor: 4.354

7.  (S)-2-[(S,Z)-3-Bromo-1-nitro-4-phenyl-but-3-en-2-yl]cyclo-hexa-none.

Authors:  Chao Wu; Long Zhao; Ai-Bao Xia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-06
  7 in total
  1 in total

1.  2-[1-(4-Bromo-phen-yl)-2-nitro-eth-yl]hexa-noic acid.

Authors:  Yanpeng Zhang; Can Zhang; Ai-Bao Xia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-05
  1 in total

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