| Literature DB >> 23424539 |
Chi-Xiao Zhang1, Yan-Peng Zhang, Ai-Bao Xia.
Abstract
The crystal structure of the title compound, C(16)H(20)BrNO(3), contains three chiral centers in the configuration 1R,2S,6R. The cyclo-hexane ring is in a chair conformation. In the crystal, mol-ecules are linked by weak C-H⋯O inter-actions, forming chains along the a-axis direction.Entities:
Year: 2013 PMID: 23424539 PMCID: PMC3569793 DOI: 10.1107/S1600536813001426
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H20BrNO3 | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 4682 reflections |
| θ = 3.4–27.4° | |
| µ = 2.45 mm−1 | |
| β = 101.782 (3)° | Platelet, colourless |
| 0.52 × 0.31 × 0.18 mm | |
| Rigaku R-AXIS RAPID/ZJUG diffractometer | 3277 independent reflections |
| Radiation source: rotating anode | 1619 reflections with |
| Graphite monochromator | |
| Detector resolution: 10.00 pixels mm-1 | θmax = 26.0°, θmin = 3.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 7234 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.35 e Å−3 | |
| 3277 reflections | Δρmin = −0.29 e Å−3 |
| 191 parameters | Extinction correction: |
| 1 restraint | Extinction coefficient: 0.072 (8) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1259 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.03 (2) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.2312 (11) | 0.2884 (7) | 0.1770 (4) | 0.0563 (15) | |
| H1 | 0.0766 | 0.3379 | 0.1754 | 0.068* | |
| C2 | 0.4174 (11) | 0.4066 (6) | 0.1660 (4) | 0.0541 (15) | |
| H2 | 0.5499 | 0.3592 | 0.1461 | 0.065* | |
| C3 | 0.3093 (14) | 0.5225 (7) | 0.1030 (4) | 0.0712 (19) | |
| C4 | 0.4813 (15) | 0.6373 (10) | 0.0880 (5) | 0.091 (3) | |
| H4A | 0.3957 | 0.7096 | 0.0504 | 0.109* | |
| H4B | 0.6060 | 0.5948 | 0.0629 | 0.109* | |
| C5 | 0.5974 (14) | 0.7093 (9) | 0.1702 (5) | 0.090 (2) | |
| H5A | 0.7190 | 0.7778 | 0.1605 | 0.108* | |
| H5B | 0.4742 | 0.7634 | 0.1905 | 0.108* | |
| C6 | 0.7146 (11) | 0.6025 (7) | 0.2361 (5) | 0.0672 (18) | |
| H6 | 0.8446 | 0.5533 | 0.2156 | 0.081* | |
| C7 | 0.5264 (10) | 0.4859 (8) | 0.2467 (3) | 0.0582 (14) | |
| H7A | 0.6031 | 0.4153 | 0.2872 | 0.070* | |
| H7B | 0.3969 | 0.5317 | 0.2679 | 0.070* | |
| C8 | 0.8263 (14) | 0.6704 (9) | 0.3179 (5) | 0.089 (2) | |
| H8A | 0.8867 | 0.5934 | 0.3565 | 0.107* | |
| H8B | 0.6999 | 0.7206 | 0.3387 | 0.107* | |
| C9 | 1.0317 (16) | 0.7769 (10) | 0.3167 (7) | 0.110 (3) | |
| H9A | 1.0904 | 0.8137 | 0.3714 | 0.165* | |
| H9B | 0.9736 | 0.8558 | 0.2802 | 0.165* | |
| H9C | 1.1607 | 0.7282 | 0.2978 | 0.165* | |
| C10 | 0.2948 (10) | 0.2114 (7) | 0.2592 (4) | 0.0522 (14) | |
| C11 | 0.4955 (12) | 0.1193 (7) | 0.2768 (4) | 0.0646 (17) | |
| H11 | 0.5875 | 0.1042 | 0.2369 | 0.078* | |
| C12 | 0.5606 (13) | 0.0500 (7) | 0.3524 (5) | 0.075 (2) | |
| H12 | 0.6965 | −0.0094 | 0.3637 | 0.090* | |
| C13 | 0.4189 (15) | 0.0708 (8) | 0.4112 (5) | 0.076 (2) | |
| C14 | 0.2187 (14) | 0.1583 (8) | 0.3947 (4) | 0.0708 (19) | |
| H14 | 0.1244 | 0.1714 | 0.4341 | 0.085* | |
| C15 | 0.1579 (11) | 0.2267 (8) | 0.3194 (4) | 0.0622 (17) | |
| H15 | 0.0206 | 0.2851 | 0.3085 | 0.075* | |
| C16 | 0.1937 (11) | 0.1852 (7) | 0.1032 (4) | 0.0616 (17) | |
| H16A | 0.1394 | 0.2399 | 0.0527 | 0.074* | |
| H16B | 0.3464 | 0.1395 | 0.1001 | 0.074* | |
| N1 | 0.0135 (12) | 0.0724 (7) | 0.1101 (4) | 0.0700 (16) | |
| O1 | 0.0953 (10) | 0.5240 (6) | 0.0704 (3) | 0.0925 (19) | |
| O2 | 0.0723 (11) | −0.0541 (7) | 0.1111 (4) | 0.1028 (18) | |
| O3 | −0.1912 (9) | 0.1117 (7) | 0.1163 (3) | 0.0939 (17) | |
| Br1 | 0.5073 (2) | −0.02467 (17) | 0.51442 (5) | 0.1269 (6) |
| C1 | 0.058 (3) | 0.059 (3) | 0.054 (4) | −0.002 (3) | 0.015 (3) | −0.004 (3) |
| C2 | 0.053 (3) | 0.055 (3) | 0.056 (3) | −0.005 (3) | 0.015 (3) | 0.006 (3) |
| C3 | 0.089 (5) | 0.074 (5) | 0.053 (4) | −0.003 (4) | 0.019 (3) | 0.010 (3) |
| C4 | 0.096 (5) | 0.099 (6) | 0.074 (5) | −0.021 (5) | 0.007 (4) | 0.028 (4) |
| C5 | 0.084 (5) | 0.071 (5) | 0.120 (7) | −0.004 (4) | 0.028 (5) | 0.035 (5) |
| C6 | 0.058 (4) | 0.052 (4) | 0.091 (5) | −0.004 (3) | 0.012 (4) | −0.001 (4) |
| C7 | 0.063 (3) | 0.050 (3) | 0.059 (3) | 0.002 (3) | 0.008 (3) | −0.005 (4) |
| C8 | 0.084 (5) | 0.076 (5) | 0.105 (6) | −0.013 (4) | 0.013 (4) | −0.015 (4) |
| C9 | 0.087 (5) | 0.092 (6) | 0.153 (10) | −0.022 (5) | 0.030 (6) | −0.035 (6) |
| C10 | 0.050 (3) | 0.050 (3) | 0.056 (4) | 0.002 (3) | 0.009 (3) | 0.005 (3) |
| C11 | 0.072 (4) | 0.067 (4) | 0.059 (4) | 0.004 (4) | 0.023 (3) | 0.010 (3) |
| C12 | 0.069 (4) | 0.061 (4) | 0.089 (5) | 0.005 (3) | 0.000 (4) | −0.002 (4) |
| C13 | 0.094 (5) | 0.069 (4) | 0.063 (4) | −0.006 (4) | 0.011 (4) | −0.015 (4) |
| C14 | 0.085 (5) | 0.083 (5) | 0.047 (4) | 0.001 (4) | 0.020 (3) | −0.003 (3) |
| C15 | 0.062 (4) | 0.066 (4) | 0.062 (4) | 0.001 (4) | 0.019 (3) | 0.002 (3) |
| C16 | 0.060 (3) | 0.074 (5) | 0.051 (3) | −0.011 (3) | 0.012 (3) | −0.008 (4) |
| N1 | 0.077 (4) | 0.078 (5) | 0.053 (3) | −0.015 (4) | 0.009 (3) | −0.001 (3) |
| O1 | 0.081 (3) | 0.111 (5) | 0.077 (3) | 0.000 (3) | −0.003 (3) | 0.031 (3) |
| O2 | 0.107 (4) | 0.067 (4) | 0.128 (5) | −0.012 (3) | 0.007 (3) | 0.016 (3) |
| O3 | 0.063 (3) | 0.127 (5) | 0.097 (4) | −0.028 (3) | 0.030 (3) | −0.031 (3) |
| Br1 | 0.1788 (11) | 0.1258 (9) | 0.0677 (6) | 0.0169 (8) | 0.0050 (5) | 0.0258 (7) |
| C1—C10 | 1.511 (8) | C8—H8A | 0.9700 |
| C1—C16 | 1.528 (8) | C8—H8B | 0.9700 |
| C1—C2 | 1.550 (8) | C9—H9A | 0.9600 |
| C1—H1 | 0.9800 | C9—H9B | 0.9600 |
| C2—C3 | 1.530 (8) | C9—H9C | 0.9600 |
| C2—C7 | 1.535 (8) | C10—C15 | 1.387 (8) |
| C2—H2 | 0.9800 | C10—C11 | 1.398 (8) |
| C3—O1 | 1.218 (8) | C11—C12 | 1.386 (9) |
| C3—C4 | 1.490 (10) | C11—H11 | 0.9300 |
| C4—C5 | 1.536 (12) | C12—C13 | 1.392 (11) |
| C4—H4A | 0.9700 | C12—H12 | 0.9300 |
| C4—H4B | 0.9700 | C13—C14 | 1.370 (10) |
| C5—C6 | 1.517 (10) | C13—Br1 | 1.896 (8) |
| C5—H5A | 0.9700 | C14—C15 | 1.376 (9) |
| C5—H5B | 0.9700 | C14—H14 | 0.9300 |
| C6—C8 | 1.506 (10) | C15—H15 | 0.9300 |
| C6—C7 | 1.546 (9) | C16—N1 | 1.475 (9) |
| C6—H6 | 0.9800 | C16—H16A | 0.9700 |
| C7—H7A | 0.9700 | C16—H16B | 0.9700 |
| C7—H7B | 0.9700 | N1—O2 | 1.212 (9) |
| C8—C9 | 1.522 (11) | N1—O3 | 1.235 (7) |
| C10—C1—C16 | 113.3 (5) | C6—C8—C9 | 115.9 (8) |
| C10—C1—C2 | 113.2 (5) | C6—C8—H8A | 108.3 |
| C16—C1—C2 | 109.3 (5) | C9—C8—H8A | 108.3 |
| C10—C1—H1 | 106.9 | C6—C8—H8B | 108.3 |
| C16—C1—H1 | 106.9 | C9—C8—H8B | 108.3 |
| C2—C1—H1 | 106.9 | H8A—C8—H8B | 107.4 |
| C3—C2—C7 | 107.1 (5) | C8—C9—H9A | 109.5 |
| C3—C2—C1 | 112.7 (5) | C8—C9—H9B | 109.5 |
| C7—C2—C1 | 113.2 (5) | H9A—C9—H9B | 109.5 |
| C3—C2—H2 | 107.9 | C8—C9—H9C | 109.5 |
| C7—C2—H2 | 107.9 | H9A—C9—H9C | 109.5 |
| C1—C2—H2 | 107.9 | H9B—C9—H9C | 109.5 |
| O1—C3—C4 | 122.6 (6) | C15—C10—C11 | 117.3 (6) |
| O1—C3—C2 | 122.0 (6) | C15—C10—C1 | 122.3 (5) |
| C4—C3—C2 | 115.3 (6) | C11—C10—C1 | 120.4 (5) |
| C3—C4—C5 | 109.5 (6) | C12—C11—C10 | 121.5 (6) |
| C3—C4—H4A | 109.8 | C12—C11—H11 | 119.2 |
| C5—C4—H4A | 109.8 | C10—C11—H11 | 119.2 |
| C3—C4—H4B | 109.8 | C11—C12—C13 | 118.9 (7) |
| C5—C4—H4B | 109.8 | C11—C12—H12 | 120.6 |
| H4A—C4—H4B | 108.2 | C13—C12—H12 | 120.6 |
| C6—C5—C4 | 113.7 (7) | C14—C13—C12 | 120.7 (7) |
| C6—C5—H5A | 108.8 | C14—C13—Br1 | 120.5 (6) |
| C4—C5—H5A | 108.8 | C12—C13—Br1 | 118.8 (6) |
| C6—C5—H5B | 108.8 | C15—C14—C13 | 119.6 (7) |
| C4—C5—H5B | 108.8 | C15—C14—H14 | 120.2 |
| H5A—C5—H5B | 107.7 | C13—C14—H14 | 120.2 |
| C8—C6—C5 | 114.6 (6) | C14—C15—C10 | 122.1 (6) |
| C8—C6—C7 | 111.0 (6) | C14—C15—H15 | 119.0 |
| C5—C6—C7 | 108.9 (5) | C10—C15—H15 | 119.0 |
| C8—C6—H6 | 107.3 | N1—C16—C1 | 111.2 (5) |
| C5—C6—H6 | 107.3 | N1—C16—H16A | 109.4 |
| C7—C6—H6 | 107.3 | C1—C16—H16A | 109.4 |
| C2—C7—C6 | 113.3 (5) | N1—C16—H16B | 109.4 |
| C2—C7—H7A | 108.9 | C1—C16—H16B | 109.4 |
| C6—C7—H7A | 108.9 | H16A—C16—H16B | 108.0 |
| C2—C7—H7B | 108.9 | O2—N1—O3 | 122.6 (7) |
| C6—C7—H7B | 108.9 | O2—N1—C16 | 119.2 (7) |
| H7A—C7—H7B | 107.7 | O3—N1—C16 | 118.1 (6) |
| C10—C1—C2—C3 | −156.6 (5) | C16—C1—C10—C15 | −122.7 (7) |
| C16—C1—C2—C3 | 76.1 (6) | C2—C1—C10—C15 | 112.1 (7) |
| C10—C1—C2—C7 | −34.9 (7) | C16—C1—C10—C11 | 56.5 (8) |
| C16—C1—C2—C7 | −162.2 (5) | C2—C1—C10—C11 | −68.7 (8) |
| C7—C2—C3—O1 | −120.3 (7) | C15—C10—C11—C12 | −2.2 (9) |
| C1—C2—C3—O1 | 4.8 (9) | C1—C10—C11—C12 | 178.6 (6) |
| C7—C2—C3—C4 | 56.5 (8) | C10—C11—C12—C13 | 1.3 (10) |
| C1—C2—C3—C4 | −178.4 (6) | C11—C12—C13—C14 | 0.0 (11) |
| O1—C3—C4—C5 | 121.3 (8) | C11—C12—C13—Br1 | 179.8 (5) |
| C2—C3—C4—C5 | −55.4 (9) | C12—C13—C14—C15 | −0.3 (11) |
| C3—C4—C5—C6 | 53.7 (9) | Br1—C13—C14—C15 | 179.9 (6) |
| C4—C5—C6—C8 | −179.0 (6) | C13—C14—C15—C10 | −0.7 (11) |
| C4—C5—C6—C7 | −54.0 (8) | C11—C10—C15—C14 | 1.9 (10) |
| C3—C2—C7—C6 | −56.0 (7) | C1—C10—C15—C14 | −178.9 (6) |
| C1—C2—C7—C6 | 179.2 (5) | C10—C1—C16—N1 | 54.0 (7) |
| C8—C6—C7—C2 | −176.6 (5) | C2—C1—C16—N1 | −178.8 (5) |
| C5—C6—C7—C2 | 56.3 (8) | C1—C16—N1—O2 | −120.9 (8) |
| C5—C6—C8—C9 | −61.7 (9) | C1—C16—N1—O3 | 57.6 (7) |
| C7—C6—C8—C9 | 174.4 (7) |
| H··· | ||||
| C11—H11···O3i | 0.93 | 2.56 | 3.478 (9) | 169 |
| C16—H16 | 0.97 | 2.58 | 3.500 (8) | 158 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C11—H11⋯O3i | 0.93 | 2.56 | 3.478 (9) | 169 |
| C16—H16 | 0.97 | 2.58 | 3.500 (8) | 158 |
Symmetry code: (i) .