Literature DB >> 21583692

(S)-2-[(S,E)-4-(4-Chloro-phen-yl)-1-nitro-but-3-en-2-yl]cyclo-hexa-none.

Zhaobo Li, Yi Guo, Bailin Li, Shuping Luo.   

Abstract

The title compound, C(16)H(18)ClNO(3), was obtained by the organocatalytic asymmetric Michael addition of cyclo-hexa-none to 1-chloro-4-[(1E,3E)-4-nitro-buta-1,3-dien-yl]benzene. The double bond has an E configuration. The cyclo-hexa-none ring adopts a chair conformation. The conformation of the mol-ecule is stabilized by a weak intra-molecular C-H⋯O hydrogen bond.

Entities:  

Year:  2009        PMID: 21583692      PMCID: PMC2977405          DOI: 10.1107/S1600536809029213

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For asymmetric Michael addition reactions employing chiral organo­catalysts, see: Belot et al. (2008 ▶); Dalko & Moisan (2004 ▶); Yu et al. (2009 ▶). For details of the synthesis, see: Xu et al. (2008 ▶); For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C16H18ClNO3 M = 307.78 Orthorhombic, a = 5.5300 (3) Å b = 8.5175 (6) Å c = 34.0903 (18) Å V = 1605.71 (17) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 296 K 0.48 × 0.32 × 0.28 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.879, T max = 0.933 15644 measured reflections 2148 independent reflections 1391 reflections with F 2 > 2σ(F 2) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.124 S = 1.00 2148 reflections 192 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.27 e Å−3 Absolute structure: Flack (1983 ▶), 1486 Friedel pairs Flack parameter: 0.27 (18) Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809029213/bx2224sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029213/bx2224Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18ClNO3F(000) = 648.00
Mr = 307.78Dx = 1.273 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71075 Å
Hall symbol: P 2ac 2abCell parameters from 9533 reflections
a = 5.5300 (3) Åθ = 3.0–27.4°
b = 8.5175 (6) ŵ = 0.25 mm1
c = 34.0903 (18) ÅT = 296 K
V = 1605.71 (17) Å3Chunk, colourless
Z = 40.48 × 0.32 × 0.28 mm
Rigaku R-AXIS RAPID diffractometer1391 reflections with F2 > 2σ(F2)
Detector resolution: 10.00 pixels mm-1Rint = 0.034
ω scansθmax = 27.4°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −7→6
Tmin = 0.879, Tmax = 0.933k = −11→11
15644 measured reflectionsl = −43→44
2148 independent reflections
Refinement on F2(Δ/σ)max = 0.001
R[F2 > 2σ(F2)] = 0.044Δρmax = 0.22 e Å3
wR(F2) = 0.124Δρmin = −0.27 e Å3
S = 1.00Extinction correction: SHELXL97 (Sheldrick, 2008)
2148 reflectionsExtinction coefficient: 0.027 (2)
192 parametersAbsolute structure: Flack (1983), 1486 Friedel pairs
H-atom parameters constrainedFlack parameter: 0.27 (18)
w = 1/[σ2(Fo2) + (0.032P)2 + 1.2P] where P = (Fo2 + 2Fc2)/3
Geometry. ENTER SPECIAL DETAILS OF THE MOLECULAR GEOMETRY
Refinement. Refinement using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
Cl10.6163 (3)0.6280 (2)1.07164 (3)0.1211 (6)
O10.9458 (5)0.1436 (3)0.77121 (8)0.0735 (8)
O21.2699 (5)0.5169 (4)0.83637 (10)0.0841 (9)
O30.9882 (6)0.6855 (3)0.84395 (12)0.1019 (12)
N11.0607 (6)0.5581 (4)0.83299 (10)0.0633 (8)
C10.8554 (6)0.3047 (4)0.84336 (9)0.0497 (8)
C20.6749 (6)0.1873 (4)0.82559 (9)0.0486 (7)
C30.6291 (9)0.0456 (4)0.85244 (10)0.0705 (12)
C40.4412 (9)−0.0647 (5)0.83580 (12)0.0801 (13)
C50.5077 (9)−0.1218 (5)0.79532 (12)0.0764 (12)
C60.5632 (7)0.0143 (4)0.76796 (10)0.0643 (10)
C70.7474 (7)0.1200 (4)0.78612 (10)0.0532 (8)
C80.8838 (7)0.4463 (4)0.81622 (10)0.0562 (9)
C90.7707 (7)0.3624 (4)0.88279 (9)0.0552 (8)
C100.8919 (7)0.3590 (4)0.91561 (10)0.0601 (9)
C110.8194 (7)0.4250 (4)0.95375 (10)0.0596 (9)
C120.6144 (9)0.5173 (5)0.95838 (12)0.0754 (12)
C130.5508 (9)0.5783 (5)0.99460 (12)0.0809 (13)
C140.6932 (9)0.5491 (5)1.02636 (12)0.0754 (12)
C150.8973 (10)0.4591 (6)1.02286 (12)0.0837 (14)
C160.9577 (8)0.3972 (5)0.98675 (11)0.0726 (12)
H11.01270.25310.84640.060*
H20.52060.24210.82210.058*
H90.61590.40480.88390.066*
H101.04150.30920.91480.072*
H120.51770.53860.93670.090*
H130.41180.63890.99720.097*
H150.99430.43981.04460.100*
H161.09520.33500.98460.087*
H310.7795−0.01140.85580.085*
H320.57370.08330.87770.085*
H410.4259−0.15460.85310.096*
H420.2875−0.01010.83440.096*
H510.3737−0.18160.78470.092*
H520.6493−0.18860.79720.092*
H610.6255−0.02630.74340.077*
H620.41620.07320.76310.077*
H810.94030.41110.79080.067*
H820.72870.49810.81330.067*
U11U22U33U12U13U23
Cl10.1546 (14)0.1453 (13)0.0635 (6)−0.0040 (13)0.0179 (8)−0.0299 (7)
O10.0658 (17)0.0833 (19)0.0716 (16)−0.0074 (17)0.0162 (14)−0.0129 (15)
O20.0494 (16)0.086 (2)0.117 (2)−0.0064 (16)−0.0101 (17)0.006 (2)
O30.087 (2)0.0605 (17)0.158 (3)−0.005 (2)−0.018 (2)−0.023 (2)
N10.0585 (19)0.0535 (18)0.078 (2)−0.0089 (18)−0.0045 (18)0.0029 (17)
C10.0521 (19)0.0498 (18)0.0472 (16)−0.0037 (18)−0.0020 (16)−0.0009 (15)
C20.0516 (18)0.0480 (18)0.0462 (15)−0.0035 (17)0.0013 (15)−0.0015 (14)
C30.101 (3)0.061 (2)0.0486 (18)−0.032 (2)0.001 (2)0.0005 (17)
C40.109 (3)0.067 (2)0.064 (2)−0.037 (2)0.000 (2)−0.003 (2)
C50.095 (3)0.058 (2)0.076 (2)−0.010 (2)−0.009 (2)−0.009 (2)
C60.072 (2)0.068 (2)0.0534 (19)−0.009 (2)−0.0023 (19)−0.0126 (18)
C70.057 (2)0.053 (2)0.0501 (17)0.0003 (19)−0.0022 (17)−0.0014 (16)
C80.060 (2)0.050 (2)0.0583 (19)−0.014 (2)−0.0097 (18)0.0038 (16)
C90.058 (2)0.055 (2)0.0526 (17)−0.0046 (19)−0.0029 (17)−0.0023 (17)
C100.063 (2)0.064 (2)0.0537 (18)0.005 (2)−0.0053 (18)−0.0025 (17)
C110.064 (2)0.060 (2)0.0547 (19)−0.005 (2)−0.0032 (18)−0.0040 (17)
C120.079 (2)0.089 (3)0.058 (2)0.010 (2)−0.006 (2)−0.006 (2)
C130.085 (3)0.089 (3)0.069 (2)0.014 (3)0.002 (2)−0.012 (2)
C140.090 (3)0.079 (2)0.058 (2)−0.012 (3)0.006 (2)−0.007 (2)
C150.097 (3)0.101 (3)0.053 (2)−0.006 (3)−0.011 (2)−0.005 (2)
C160.075 (2)0.085 (3)0.059 (2)0.004 (2)−0.011 (2)−0.003 (2)
Cl1—C141.736 (4)C14—C151.370 (7)
O1—C71.226 (4)C15—C161.380 (5)
O2—N11.214 (4)C1—H10.980
O3—N11.216 (4)C2—H20.980
N1—C81.480 (5)C3—H310.970
C1—C21.537 (4)C3—H320.970
C1—C81.528 (4)C4—H410.970
C1—C91.506 (4)C4—H420.970
C2—C31.536 (5)C5—H510.970
C2—C71.516 (4)C5—H520.970
C3—C41.512 (6)C6—H610.970
C4—C51.509 (5)C6—H620.970
C5—C61.519 (5)C8—H810.970
C6—C71.494 (5)C8—H820.970
C9—C101.305 (4)C9—H90.930
C10—C111.472 (5)C10—H100.930
C11—C121.389 (6)C12—H120.930
C11—C161.381 (5)C13—H130.930
C12—C131.385 (6)C15—H150.930
C13—C141.362 (6)C16—H160.930
O2—N1—O3122.9 (3)C2—C3—H32108.8
O2—N1—C8118.7 (3)C4—C3—H31108.8
O3—N1—C8118.4 (3)C4—C3—H32108.8
C2—C1—C8110.0 (2)H31—C3—H32109.5
C2—C1—C9111.2 (2)C3—C4—H41108.8
C8—C1—C9108.3 (2)C3—C4—H42108.8
C1—C2—C3112.5 (2)C5—C4—H41108.8
C1—C2—C7115.1 (2)C5—C4—H42108.8
C3—C2—C7106.0 (2)H41—C4—H42109.5
C2—C3—C4112.2 (3)C4—C5—H51109.0
C3—C4—C5112.1 (3)C4—C5—H52109.0
C4—C5—C6111.4 (3)C6—C5—H51109.0
C5—C6—C7110.1 (3)C6—C5—H52109.0
O1—C7—C2122.9 (3)H51—C5—H52109.5
O1—C7—C6122.5 (3)C5—C6—H61109.3
C2—C7—C6114.5 (3)C5—C6—H62109.3
N1—C8—C1110.0 (2)C7—C6—H61109.3
C1—C9—C10126.8 (3)C7—C6—H62109.3
C9—C10—C11127.5 (3)H61—C6—H62109.5
C10—C11—C12122.6 (3)N1—C8—H81109.3
C10—C11—C16120.2 (3)N1—C8—H82109.3
C12—C11—C16117.2 (3)C1—C8—H81109.3
C11—C12—C13121.4 (4)C1—C8—H82109.3
C12—C13—C14119.6 (4)H81—C8—H82109.5
Cl1—C14—C13119.6 (3)C1—C9—H9116.6
Cl1—C14—C15119.7 (3)C10—C9—H9116.6
C13—C14—C15120.6 (4)C9—C10—H10116.2
C14—C15—C16119.4 (4)C11—C10—H10116.2
C11—C16—C15121.8 (4)C11—C12—H12119.3
C2—C1—H1109.1C13—C12—H12119.3
C8—C1—H1109.1C12—C13—H13120.2
C9—C1—H1109.1C14—C13—H13120.2
C1—C2—H2107.6C14—C15—H15120.3
C3—C2—H2107.6C16—C15—H15120.3
C7—C2—H2107.6C11—C16—H16119.1
C2—C3—H31108.8C15—C16—H16119.1
O2—N1—C8—C164.7 (4)C3—C4—C5—C6−52.9 (5)
O3—N1—C8—C1−112.9 (3)C4—C5—C6—C752.5 (5)
C2—C1—C8—N1−179.0 (2)C5—C6—C7—O1118.3 (4)
C8—C1—C2—C3−177.3 (3)C5—C6—C7—C2−58.0 (4)
C8—C1—C2—C761.1 (3)C1—C9—C10—C11175.2 (3)
C2—C1—C9—C10126.2 (4)C9—C10—C11—C12−7.3 (6)
C9—C1—C2—C3−57.3 (4)C9—C10—C11—C16173.2 (4)
C9—C1—C2—C7−178.8 (2)C10—C11—C12—C13−179.8 (4)
C8—C1—C9—C10−112.8 (4)C10—C11—C16—C15179.0 (4)
C9—C1—C8—N159.2 (3)C12—C11—C16—C15−0.6 (6)
C1—C2—C3—C4176.8 (3)C16—C11—C12—C13−0.2 (6)
C1—C2—C7—O17.5 (5)C11—C12—C13—C140.8 (7)
C1—C2—C7—C6−176.2 (3)C12—C13—C14—Cl1179.0 (3)
C3—C2—C7—O1−117.6 (4)C12—C13—C14—C15−0.5 (7)
C3—C2—C7—C658.7 (4)Cl1—C14—C15—C16−179.8 (3)
C7—C2—C3—C4−56.6 (4)C13—C14—C15—C16−0.3 (6)
C2—C3—C4—C556.4 (4)C14—C15—C16—C110.8 (7)
D—H···AD—HH···AD···AD—H···A
C8—H81···O10.972.373.020 (4)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H81⋯O10.972.373.020 (4)124
  5 in total

1.  In the golden age of organocatalysis.

Authors:  Peter I Dalko; Lionel Moisan
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2.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Enantioselective organocatalytic conjugate addition of aldehydes to nitrodienes.

Authors:  Sébastien Belot; Assunta Massaro; Alice Tenti; Alessandro Mordini; Alexandre Alexakis
Journal:  Org Lett       Date:  2008-09-11       Impact factor: 6.005

4.  A chiral thioureido acid as an effective additive for enantioselective organocatalytic Michael additions of nitroolefins.

Authors:  Dan-Qian Xu; Hua-Dong Yue; Shu-Ping Luo; Ai-Bao Xia; Shuai Zhang; Zhen-Yuan Xu
Journal:  Org Biomol Chem       Date:  2008-05-16       Impact factor: 3.876

5.  Bifunctional guanidine via an amino amide skeleton for asymmetric Michael reactions of beta-ketoesters with nitroolefins: a concise synthesis of bicyclic beta-amino acids.

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  5 in total
  2 in total

1.  (2S,4S)-2-[(S,E)-2-Bromo-1-nitro-methyl-3-phenyl-all-yl]-4-methyl-cyclo-hexa-none.

Authors:  Long Zhao; Chao Wu; Wen-Zeng Weng; Chu-Xia Yan; Ai-Bao Xia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-31

2.  (2S,4R)-2-[(1R)-1-(4-Bromo-phen-yl)-2-nitro-eth-yl]-4-ethyl-cyclo-hexa-none.

Authors:  Chi-Xiao Zhang; Yan-Peng Zhang; Ai-Bao Xia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-19
  2 in total

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