Literature DB >> 21577508

(R)-7-Bromo-2,3,4,4a-tetra-hydro-1H-xanthen-1-one.

Ai-Bao Xia1, Jie Tang, Jun-Rong Jiang, Yi-Feng Wang, Shu-Ping Luo.   

Abstract

The title compound, C(13)H(11)BrO(2), contains a tricyclic ring system with one chiral center which exhibits an R configuration. The crystal structure is devoid of any classical hydrogen bonding.

Entities:  

Year:  2009        PMID: 21577508      PMCID: PMC2969887          DOI: 10.1107/S1600536809030244

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Shi et al. (2004 ▶); Ndjakou Lenta et al. (2007 ▶). Domino or cascade reactions allow, in principle, the formation of multiple new bonds and stereocenters in a one-pot system, see: Enders et al. (2007 ▶); Yu & Wang (2002 ▶).

Experimental

Crystal data

C13H11BrO2 M = 279.13 Monoclinic, a = 7.5419 (4) Å b = 6.9039 (3) Å c = 10.7634 (5) Å β = 93.7110 (12)° V = 559.26 (5) Å3 Z = 2 Mo Kα radiation μ = 3.67 mm−1 T = 296 K 0.40 × 0.37 × 0.26 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.252, T max = 0.386 5496 measured reflections 2525 independent reflections 1772 reflections with F 2 > 2σ(F 2) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.102 S = 1.00 2525 reflections 147 parameters H-atom parameters constrained Δρmax = 0.64 e Å−3 Δρmin = −0.88 e Å−3 Absolute structure: Flack (1983 ▶), 1145 Friedel pairs Flack parameter: 0.01 (2) Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC and Rigaku, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: CrystalStructure and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809030244/pv2187sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030244/pv2187Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11BrO2F(000) = 280.00
Mr = 279.13Dx = 1.657 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71075 Å
Hall symbol: P 2ybCell parameters from 4299 reflections
a = 7.5419 (4) Åθ = 3.2–27.4°
b = 6.9039 (3) ŵ = 3.67 mm1
c = 10.7634 (5) ÅT = 296 K
β = 93.7110 (12)°Chunk, yellow
V = 559.26 (5) Å30.40 × 0.37 × 0.26 mm
Z = 2
Rigaku R-AXIS RAPID diffractometer1772 reflections with F2 > 2σ(F2)
Detector resolution: 10.00 pixels mm-1Rint = 0.036
ω scansθmax = 27.4°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −9→9
Tmin = 0.252, Tmax = 0.386k = −8→8
5496 measured reflectionsl = −12→13
2525 independent reflections
Refinement on F2(Δ/σ)max = 0.001
R[F2 > 2σ(F2)] = 0.033Δρmax = 0.64 e Å3
wR(F2) = 0.102Δρmin = −0.88 e Å3
S = 1.00Extinction correction: SHELXL97 (Sheldrick, 2008)
2525 reflectionsExtinction coefficient: 0.035 (3)
147 parametersAbsolute structure: Flack (1983), 1145 Friedel pairs
H-atom parameters constrainedFlack parameter: 0.01 (2)
w = 1/[σ2(Fo2) + (0.02P)2 + P] where P = (Fo2 + 2Fc2)/3
Experimental. The structure of the title compound was confirmed by NMR and HRMS methods: 1HNMR (500 MHz, CDCl3): 7.33–7.31(m, 3H), 6.77–6.75(d, J=9.5 Hz,1H),5.00–4.97(m, 1H),2.62–2.58 (m, 1H), 2.51–2.46(m, 1H),2.42–2.35(m, 1H),2.13–2.07(m, 1H),2.04–1.96 (m, 1H), 1.75–1.65(m, 1H) p.p.m.; 13CNMR (125 MHz, CDCl3): 197.1, 154.8, 134.4, 131.8, 131.4, 129.9, 123.9, 117.8, 114.0, 74.8, 38.8, 29.6, 17.9 p.p.m.. HRMS: (EI+) m/z calcd for (C13H11BrO2)+ 277.9942, found 277.9949.
Geometry. ENTER SPECIAL DETAILS OF THE MOLECULAR GEOMETRY
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.96613 (6)0.67049 (12)0.66752 (4)0.0633 (2)
O10.5964 (5)0.6274 (8)−0.0423 (3)0.0656 (16)
O20.2944 (3)0.6625 (11)0.3348 (2)0.0473 (7)
C10.4600 (6)0.6384 (11)0.0116 (4)0.0505 (16)
C20.2803 (7)0.6187 (12)−0.0570 (4)0.063 (2)
C30.1314 (6)0.7222 (8)0.0028 (4)0.0557 (18)
C40.1286 (5)0.6734 (16)0.1395 (3)0.0519 (11)
C50.2999 (6)0.7335 (7)0.2089 (4)0.0440 (13)
C60.4495 (4)0.6742 (14)0.4075 (3)0.0401 (8)
C70.4396 (5)0.6820 (14)0.5352 (3)0.0434 (10)
C80.5937 (5)0.6827 (14)0.6123 (3)0.0454 (11)
C90.7562 (5)0.6759 (14)0.5602 (3)0.0412 (9)
C100.7694 (5)0.6637 (16)0.4334 (3)0.0425 (9)
C110.6136 (4)0.6623 (14)0.3548 (3)0.0393 (8)
C120.6132 (5)0.6402 (11)0.2208 (4)0.0447 (15)
C130.4640 (4)0.6636 (15)0.1494 (3)0.0413 (9)
H50.30340.87530.21170.053*
H70.32940.68680.56920.052*
H80.58790.68770.69830.054*
H100.88010.65640.40040.051*
H120.71810.60950.18440.054*
H210.25090.4820−0.06220.075*
H220.28830.6705−0.14020.075*
H310.01910.6841−0.03910.067*
H320.14750.8609−0.00600.067*
H410.03040.74080.17420.062*
H420.11290.53470.14860.062*
U11U22U33U12U13U23
Br10.0439 (2)0.0990 (4)0.0455 (2)−0.0020 (5)−0.00874 (17)0.0000 (5)
O10.062 (2)0.095 (5)0.0402 (16)0.016 (2)0.0060 (15)−0.009 (2)
O20.0289 (13)0.070 (2)0.0433 (14)0.006 (3)0.0015 (10)0.005 (3)
C10.053 (2)0.056 (4)0.042 (2)0.012 (3)−0.0026 (19)−0.005 (2)
C20.063 (3)0.079 (7)0.043 (2)0.004 (3)−0.015 (2)−0.003 (3)
C30.044 (2)0.073 (5)0.048 (2)0.003 (2)−0.012 (2)0.009 (2)
C40.035 (2)0.065 (3)0.056 (2)−0.011 (5)−0.0060 (17)0.009 (5)
C50.038 (2)0.054 (3)0.039 (2)0.000 (2)−0.0029 (18)0.004 (2)
C60.0311 (18)0.045 (2)0.0437 (19)−0.001 (3)0.0006 (14)0.007 (4)
C70.037 (2)0.053 (2)0.041 (2)0.000 (3)0.0100 (15)0.006 (3)
C80.047 (2)0.053 (3)0.0361 (19)−0.002 (3)0.0038 (16)−0.005 (3)
C90.0362 (19)0.047 (2)0.0400 (19)−0.003 (4)−0.0060 (14)0.005 (4)
C100.0340 (19)0.056 (2)0.0378 (18)0.001 (4)0.0050 (14)0.000 (4)
C110.0359 (19)0.044 (2)0.0376 (18)−0.002 (3)0.0014 (14)−0.005 (4)
C120.034 (2)0.058 (4)0.042 (2)0.006 (2)0.0051 (15)0.005 (3)
C130.040 (2)0.045 (2)0.0385 (19)0.001 (4)0.0004 (15)0.001 (4)
Br1—C91.899 (3)C10—C111.403 (5)
O1—C11.215 (6)C11—C121.450 (5)
O2—C51.444 (5)C12—C131.330 (5)
O2—C61.367 (4)C2—H210.970
C1—C21.507 (7)C2—H220.970
C1—C131.492 (6)C3—H310.970
C2—C31.510 (8)C3—H320.970
C3—C41.511 (6)C4—H410.970
C4—C51.508 (6)C4—H420.970
C5—C131.509 (6)C5—H50.980
C6—C71.382 (5)C7—H70.930
C6—C111.397 (5)C8—H80.930
C7—C81.384 (5)C10—H100.930
C8—C91.381 (5)C12—H120.930
C9—C101.377 (5)
C5—O2—C6116.2 (3)C1—C2—H21108.1
O1—C1—C2121.5 (4)C1—C2—H22108.1
O1—C1—C13121.2 (4)C3—C2—H21108.1
C2—C1—C13117.2 (4)C3—C2—H22108.1
C1—C2—C3114.7 (4)H21—C2—H22109.5
C2—C3—C4111.5 (5)C2—C3—H31109.0
C3—C4—C5110.8 (4)C2—C3—H32109.0
O2—C5—C4107.2 (4)C4—C3—H31109.0
O2—C5—C13111.3 (4)C4—C3—H32109.0
C4—C5—C13113.7 (4)H31—C3—H32109.5
O2—C6—C7118.2 (3)C3—C4—H41109.1
O2—C6—C11120.8 (3)C3—C4—H42109.1
C7—C6—C11120.8 (3)C5—C4—H41109.1
C6—C7—C8120.0 (3)C5—C4—H42109.1
C7—C8—C9119.2 (3)H41—C4—H42109.5
Br1—C9—C8118.7 (2)O2—C5—H5108.1
Br1—C9—C10119.4 (2)C4—C5—H5108.1
C8—C9—C10121.8 (3)C13—C5—H5108.1
C9—C10—C11119.1 (3)C6—C7—H7120.0
C6—C11—C10119.0 (3)C8—C7—H7120.0
C6—C11—C12117.7 (3)C7—C8—H8120.4
C10—C11—C12123.3 (3)C9—C8—H8120.4
C11—C12—C13120.6 (4)C9—C10—H10120.4
C1—C13—C5119.6 (3)C11—C10—H10120.4
C1—C13—C12121.5 (4)C11—C12—H12119.7
C5—C13—C12118.7 (3)C13—C12—H12119.7
C5—O2—C6—C7155.2 (7)O2—C6—C7—C8176.3 (8)
C5—O2—C6—C11−30.1 (12)O2—C6—C11—C10−176.4 (9)
C6—O2—C5—C4169.6 (7)O2—C6—C11—C121.0 (13)
C6—O2—C5—C1344.7 (8)C7—C6—C11—C10−1.8 (14)
O1—C1—C2—C3−153.0 (6)C7—C6—C11—C12175.6 (8)
O1—C1—C13—C5162.5 (7)C11—C6—C7—C81.6 (14)
O1—C1—C13—C12−12.2 (13)C6—C7—C8—C90.1 (12)
C2—C1—C13—C5−20.1 (11)C7—C8—C9—Br1−178.5 (7)
C2—C1—C13—C12165.2 (8)C7—C8—C9—C10−1.6 (15)
C13—C1—C2—C329.6 (9)Br1—C9—C10—C11178.2 (7)
C1—C2—C3—C4−50.2 (8)C8—C9—C10—C111.4 (15)
C2—C3—C4—C560.7 (8)C9—C10—C11—C60.3 (11)
C3—C4—C5—O2−173.7 (6)C9—C10—C11—C12−176.9 (9)
C3—C4—C5—C13−50.2 (9)C6—C11—C12—C1311.1 (13)
O2—C5—C13—C1151.9 (7)C10—C11—C12—C13−171.7 (9)
O2—C5—C13—C12−33.3 (10)C11—C12—C13—C1−179.0 (8)
C4—C5—C13—C130.7 (10)C11—C12—C13—C56.3 (12)
C4—C5—C13—C12−154.5 (8)
  4 in total

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Authors:  Dieter Enders; Christoph Grondal; Matthias R M Hüttl
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Organocatalysis: asymmetric cascade reactions catalysed by chiral secondary amines.

Authors:  Xinhong Yu; Wei Wang
Journal:  Org Biomol Chem       Date:  2008-05-19       Impact factor: 3.876

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
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1.  (2S,4R)-2-[(1R)-1-(4-Bromo-phen-yl)-2-nitro-eth-yl]-4-ethyl-cyclo-hexa-none.

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2.  (4aR,9R,9aR)-7-Bromo-9-nitro-methyl-2,3,4,4a,9,9a-hexa-hydro-1H-xanthen-1-one.

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