Literature DB >> 23424523

1-Phenyl-2-[4-(trifluoro-meth-yl)phen-yl]-1H-benzimidazole.

K Jayamoorthy1, T Mohandas, P Sakthivel, J Jayabharathi.   

Abstract

In the title mol-ecule, C(20)H(13)F(3)N(2), the benzimidazole unit is close to being planar [maximum deviation = 0.012 (1) Å] and forms dihedral angles of 31.43 (7) and 61.45 (9)° with the 4-(trifluoromethyl)phenyl and 1-phenyl rings, respectively; the dihedral angle between these rings is 60.94 (10)°. In the crystal, C-H⋯F hydrogen bonds link the mol-ecules into chains along the c-axis direction. The CF(3) group is rotationally disordered with an occupancy ratio of 0.557 (8):0.443 (8) for the F atoms.

Entities:  

Year:  2013        PMID: 23424523      PMCID: PMC3569777          DOI: 10.1107/S1600536813000834

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the properties of related compounds, see: Bu et al. (1996 ▶); Cross et al. (1995 ▶); Fu et al. (2011 ▶); Zhang et al. (2010 ▶). For bond lengths and angles in related structures, see: Yoon et al. (2011 ▶); Kassim et al. (2012 ▶).

Experimental

Crystal data

C20H13F3N2 M = 338.32 Triclinic, a = 8.7179 (4) Å b = 9.6796 (5) Å c = 11.3612 (6) Å α = 67.654 (2)° β = 68.123 (2)° γ = 85.013 (2)° V = 821.20 (7) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker,2008 ▶) T min = 0.960, T max = 0.986 16592 measured reflections 2889 independent reflections 2338 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.105 S = 1.03 2889 reflections 255 parameters 36 restraints H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: APEX2 and SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813000834/bv2218sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000834/bv2218Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813000834/bv2218Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H13F3N2Z = 2
Mr = 338.32F(000) = 348
Triclinic, P1Dx = 1.368 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.7179 (4) ÅCell parameters from 7057 reflections
b = 9.6796 (5) Åθ = 2.3–27.1°
c = 11.3612 (6) ŵ = 0.11 mm1
α = 67.654 (2)°T = 293 K
β = 68.123 (2)°Block, colourless
γ = 85.013 (2)°0.30 × 0.20 × 0.20 mm
V = 821.20 (7) Å3
Bruker Kappa APEXII diffractometer2889 independent reflections
Radiation source: fine focus sealed tube2338 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
Detector resolution: 18.4 pixels mm-1θmax = 25.0°, θmin = 2.3°
ω and φ scanh = −10→10
Absorption correction: multi-scan (SADABS; Bruker,2008)k = −11→11
Tmin = 0.960, Tmax = 0.986l = −13→13
16592 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0469P)2 + 0.1406P] where P = (Fo2 + 2Fc2)/3
2889 reflections(Δ/σ)max = 0.001
255 parametersΔρmax = 0.15 e Å3
36 restraintsΔρmin = −0.14 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C1−0.1427 (3)0.2068 (3)1.5614 (2)0.0834 (5)
C2−0.04295 (19)0.28680 (17)1.41364 (16)0.0618 (4)
C30.0815 (2)0.39161 (19)1.37506 (17)0.0672 (4)
H30.10050.41401.44140.081*
C40.17792 (19)0.46346 (18)1.23902 (17)0.0614 (4)
H40.26120.53461.21390.074*
C50.15171 (17)0.43049 (15)1.13943 (15)0.0523 (4)
C60.02360 (19)0.32742 (17)1.17905 (16)0.0590 (4)
H60.00270.30611.11300.071*
C7−0.0730 (2)0.25634 (18)1.31517 (17)0.0635 (4)
H7−0.15870.18761.34060.076*
C80.25824 (17)0.51116 (15)0.99601 (15)0.0524 (4)
C90.40857 (19)0.68454 (16)0.81207 (16)0.0575 (4)
C100.4994 (2)0.81574 (18)0.71278 (18)0.0711 (5)
H100.50860.89700.73490.085*
C110.5744 (2)0.8215 (2)0.58197 (19)0.0782 (5)
H110.63510.90860.51400.094*
C120.5625 (2)0.7008 (2)0.54771 (18)0.0774 (5)
H120.61560.70900.45730.093*
C130.4747 (2)0.56999 (19)0.64349 (17)0.0682 (5)
H130.46760.48870.62070.082*
C140.39737 (18)0.56482 (16)0.77574 (15)0.0549 (4)
C150.27055 (17)0.30532 (15)0.90658 (15)0.0539 (4)
C160.1858 (2)0.28353 (19)0.83389 (17)0.0663 (4)
H160.14560.36450.77950.080*
C170.1609 (2)0.1411 (2)0.8421 (2)0.0855 (6)
H170.10550.12590.79180.103*
C180.2174 (3)0.0223 (2)0.9239 (3)0.0940 (7)
H180.1999−0.07380.92960.113*
C190.2999 (2)0.0440 (2)0.9977 (2)0.0926 (7)
H190.3362−0.03771.05470.111*
C200.3294 (2)0.18642 (18)0.9882 (2)0.0743 (5)
H200.38820.20161.03630.089*
N10.32109 (16)0.64829 (13)0.95021 (13)0.0604 (4)
N20.29987 (15)0.45366 (12)0.89494 (12)0.0530 (3)
F1−0.2223 (12)0.0892 (8)1.5887 (4)0.142 (3)0.557 (8)
F2−0.2557 (8)0.2984 (5)1.6041 (5)0.1329 (18)0.557 (8)
F3−0.0570 (6)0.1792 (13)1.6361 (4)0.160 (3)0.557 (8)
F1'−0.2976 (8)0.1695 (15)1.5888 (7)0.155 (4)0.443 (8)
F2'−0.1517 (17)0.2719 (7)1.6418 (4)0.140 (3)0.443 (8)
F3'−0.0821 (14)0.0771 (8)1.6144 (5)0.160 (3)0.443 (8)
U11U22U33U12U13U23
F10.203 (7)0.116 (3)0.0732 (19)−0.092 (4)−0.010 (3)−0.018 (3)
F20.122 (3)0.158 (4)0.084 (2)0.009 (3)0.007 (2)−0.053 (2)
F30.141 (3)0.231 (7)0.069 (2)−0.037 (4)−0.056 (2)0.013 (4)
N10.0698 (8)0.0499 (7)0.0627 (8)0.0024 (6)−0.0207 (6)−0.0258 (6)
N20.0609 (7)0.0454 (7)0.0545 (7)0.0035 (5)−0.0201 (6)−0.0220 (6)
C10.0916 (14)0.0895 (15)0.0642 (12)−0.0089 (12)−0.0223 (11)−0.0268 (11)
C20.0670 (10)0.0589 (9)0.0589 (10)0.0050 (7)−0.0227 (8)−0.0224 (8)
C30.0728 (10)0.0776 (11)0.0603 (10)0.0032 (8)−0.0255 (8)−0.0340 (9)
C40.0620 (9)0.0639 (9)0.0656 (10)−0.0008 (7)−0.0222 (8)−0.0321 (8)
C50.0559 (8)0.0482 (8)0.0580 (9)0.0100 (6)−0.0232 (7)−0.0247 (7)
C60.0647 (9)0.0606 (9)0.0600 (9)0.0036 (7)−0.0265 (8)−0.0278 (8)
C70.0651 (9)0.0593 (9)0.0648 (10)−0.0033 (7)−0.0218 (8)−0.0227 (8)
C80.0570 (8)0.0473 (8)0.0590 (9)0.0084 (6)−0.0240 (7)−0.0248 (7)
C90.0622 (9)0.0488 (8)0.0607 (9)0.0044 (7)−0.0212 (7)−0.0215 (7)
C100.0803 (11)0.0526 (9)0.0746 (12)−0.0029 (8)−0.0221 (9)−0.0227 (8)
C110.0835 (12)0.0625 (10)0.0695 (12)−0.0103 (9)−0.0175 (9)−0.0122 (9)
C120.0835 (12)0.0795 (12)0.0583 (10)−0.0090 (10)−0.0138 (9)−0.0236 (9)
C130.0758 (10)0.0674 (10)0.0616 (10)−0.0032 (8)−0.0189 (8)−0.0293 (9)
C140.0579 (8)0.0492 (8)0.0578 (9)0.0039 (6)−0.0209 (7)−0.0206 (7)
C150.0528 (8)0.0470 (8)0.0604 (9)0.0042 (6)−0.0135 (7)−0.0259 (7)
C160.0696 (10)0.0668 (10)0.0642 (10)−0.0043 (8)−0.0179 (8)−0.0313 (8)
C170.0841 (12)0.0859 (14)0.0873 (14)−0.0208 (11)−0.0080 (10)−0.0510 (12)
C180.0763 (12)0.0638 (12)0.1207 (18)−0.0121 (10)0.0082 (12)−0.0525 (13)
C190.0771 (12)0.0520 (10)0.1213 (18)0.0141 (9)−0.0182 (12)−0.0242 (11)
C200.0694 (10)0.0558 (10)0.0954 (13)0.0136 (8)−0.0318 (10)−0.0268 (9)
F3'0.229 (7)0.098 (4)0.084 (3)0.048 (4)−0.030 (4)0.003 (2)
F2'0.226 (8)0.108 (4)0.063 (2)−0.050 (4)−0.005 (4)−0.042 (3)
F1'0.107 (4)0.209 (9)0.089 (3)−0.058 (4)−0.023 (2)0.008 (5)
F1—C11.258 (9)C11—C121.387 (3)
F1'—C11.319 (8)C12—C131.369 (3)
F2—C11.346 (7)C13—C141.382 (2)
F2'—C11.270 (8)C15—C201.374 (2)
F3—C11.271 (6)C15—C161.373 (2)
F3'—C11.328 (9)C16—C171.377 (3)
N1—C81.312 (2)C17—C181.363 (4)
N1—C91.380 (2)C18—C191.369 (4)
N2—C81.3785 (19)C19—C201.381 (3)
N2—C141.381 (2)C3—H30.9300
N2—C151.428 (2)C4—H40.9300
C1—C21.488 (3)C6—H60.9300
C2—C31.377 (3)C7—H70.9300
C2—C71.375 (2)C10—H100.9300
C3—C41.377 (2)C11—H110.9300
C4—C51.384 (2)C12—H120.9300
C5—C81.469 (2)C13—H130.9300
C5—C61.387 (2)C16—H160.9300
C6—C71.377 (2)C17—H170.9300
C9—C141.392 (2)C18—H180.9300
C9—C101.390 (2)C19—H190.9300
C10—C111.363 (3)C20—H200.9300
C8—N1—C9105.22 (13)N2—C14—C13131.82 (16)
C8—N2—C14106.09 (12)C9—C14—C13122.50 (15)
C8—N2—C15129.34 (12)N2—C15—C16119.38 (15)
C14—N2—C15124.15 (12)N2—C15—C20119.91 (15)
F1—C1—F2106.3 (5)C16—C15—C20120.70 (16)
F1—C1—F3109.8 (6)C15—C16—C17119.60 (18)
F1—C1—C2114.8 (3)C16—C17—C18120.1 (2)
F2—C1—F3104.2 (6)C17—C18—C19120.2 (2)
F2—C1—C2108.4 (3)C18—C19—C20120.4 (2)
F3—C1—C2112.5 (3)C15—C20—C19118.9 (2)
F1'—C1—C2114.9 (3)C2—C3—H3120.00
F2'—C1—C2117.1 (4)C4—C3—H3120.00
F3'—C1—C2112.0 (4)C3—C4—H4120.00
F1'—C1—F2'104.8 (8)C5—C4—H4120.00
F1'—C1—F3'103.7 (8)C5—C6—H6120.00
F2'—C1—F3'102.8 (6)C7—C6—H6120.00
C1—C2—C3119.76 (17)C2—C7—H7120.00
C1—C2—C7120.63 (18)C6—C7—H7120.00
C3—C2—C7119.62 (15)C9—C10—H10121.00
C2—C3—C4120.44 (16)C11—C10—H10121.00
C3—C4—C5120.38 (17)C10—C11—H11119.00
C4—C5—C6118.73 (14)C12—C11—H11119.00
C4—C5—C8117.86 (14)C11—C12—H12119.00
C6—C5—C8123.37 (14)C13—C12—H12119.00
C5—C6—C7120.67 (16)C12—C13—H13122.00
C2—C7—C6120.13 (17)C14—C13—H13122.00
N1—C8—N2112.81 (13)C15—C16—H16120.00
N1—C8—C5122.94 (14)C17—C16—H16120.00
N2—C8—C5124.24 (14)C16—C17—H17120.00
N1—C9—C10130.14 (16)C18—C17—H17120.00
N1—C9—C14110.21 (14)C17—C18—H18120.00
C10—C9—C14119.65 (15)C19—C18—H18120.00
C9—C10—C11117.88 (17)C18—C19—H19120.00
C10—C11—C12121.69 (18)C20—C19—H19120.00
C11—C12—C13121.68 (17)C15—C20—H20121.00
C12—C13—C14116.59 (17)C19—C20—H20121.00
N2—C14—C9105.68 (13)
C9—N1—C8—C5−178.47 (15)C3—C4—C5—C8179.82 (16)
C8—N1—C9—C10179.79 (19)C6—C5—C8—N1147.01 (17)
C9—N1—C8—N20.13 (19)C4—C5—C8—N2150.81 (16)
C8—N1—C9—C14−0.27 (19)C8—C5—C6—C7−179.41 (16)
C8—N2—C14—C9−0.22 (18)C4—C5—C6—C7−1.7 (3)
C15—N2—C14—C9−173.36 (15)C4—C5—C8—N1−30.8 (2)
C14—N2—C15—C20114.16 (19)C6—C5—C8—N2−31.4 (3)
C14—N2—C8—N10.06 (19)C5—C6—C7—C2−0.2 (3)
C15—N2—C8—C5−8.7 (3)N1—C9—C10—C11−179.91 (19)
C8—N2—C14—C13179.45 (19)C14—C9—C10—C110.2 (3)
C14—N2—C8—C5178.63 (15)N1—C9—C14—N20.31 (19)
C8—N2—C15—C20−57.3 (2)C10—C9—C14—N2−179.74 (16)
C15—N2—C8—N1172.71 (15)C10—C9—C14—C130.6 (3)
C14—N2—C15—C16−64.8 (2)N1—C9—C14—C13−179.40 (16)
C8—N2—C15—C16123.79 (18)C9—C10—C11—C12−0.5 (3)
C15—N2—C14—C136.3 (3)C10—C11—C12—C130.1 (3)
F1—C1—C2—C3−162.7 (5)C11—C12—C13—C140.6 (3)
F1—C1—C2—C716.9 (6)C12—C13—C14—N2179.49 (18)
F3—C1—C2—C3−36.2 (7)C12—C13—C14—C9−0.9 (3)
F2—C1—C2—C378.6 (4)N2—C15—C16—C17178.39 (17)
F2—C1—C2—C7−101.9 (4)C20—C15—C16—C17−0.5 (3)
F3—C1—C2—C7143.4 (6)N2—C15—C20—C19−179.86 (19)
C7—C2—C3—C4−1.4 (3)C16—C15—C20—C19−1.0 (3)
C3—C2—C7—C61.7 (3)C15—C16—C17—C181.2 (3)
C1—C2—C3—C4178.2 (2)C16—C17—C18—C19−0.3 (4)
C1—C2—C7—C6−177.9 (2)C17—C18—C19—C20−1.2 (4)
C2—C3—C4—C5−0.5 (3)C18—C19—C20—C151.8 (4)
C3—C4—C5—C62.0 (3)
D—H···AD—HH···AD···AD—H···A
C17—H17···F3i0.932.543.429 (6)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C17—H17⋯F3i 0.932.543.429 (6)160

Symmetry code: (i) .

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