Literature DB >> 22412669

2-(4-Chloro-phen-yl)-1-phenyl-1H-benz-imidazole.

Karimah Kassim, N Zakiah N Hashim, Adibatul Husna Fadzil, M Sukeri M Yusof.   

Abstract

In the title compound, C(19)H(13)ClN(2), the dihedral angle formed by the imidazole core with the chloro-phenyl and phenyl rings are 24.07 (4) and 67.24 (4)°, respectively.

Entities:  

Year:  2012        PMID: 22412669      PMCID: PMC3297866          DOI: 10.1107/S1600536812006678

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications of benzimidazoles derivatives, see: Velík et al. (2004 ▶); Aljourani et al. (2009 ▶); Tiwari et al. (2007 ▶). For related structures, see: Nor Hashim et al. (2010 ▶); Arumugam et al. (2010 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C19H13ClN2 M = 304.76 Monoclinic, a = 8.2981 (1) Å b = 9.2963 (2) Å c = 20.7796 (3) Å β = 112.815 (1)° V = 1477.56 (4) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 293 K 0.48 × 0.39 × 0.18 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.887, T max = 0.956 33103 measured reflections 5398 independent reflections 4610 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.106 S = 1.04 5398 reflections 199 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812006678/bh2413sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812006678/bh2413Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812006678/bh2413Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H13ClN2F(000) = 632
Mr = 304.76Dx = 1.370 Mg m3
Monoclinic, P21/cMelting point: 423 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 8.2981 (1) Åθ = 2.1–32.7°
b = 9.2963 (2) ŵ = 0.26 mm1
c = 20.7796 (3) ÅT = 293 K
β = 112.815 (1)°Slab, brown
V = 1477.56 (4) Å30.48 × 0.39 × 0.18 mm
Z = 4
Bruker APEX DUO CCD area-detector diffractometer5398 independent reflections
Radiation source: fine-focus sealed tube4610 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
Detector resolution: 83.66 pixels mm-1θmax = 32.7°, θmin = 2.1°
ω scanh = −9→12
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −13→14
Tmin = 0.887, Tmax = 0.956l = −31→31
33103 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0532P)2 + 0.487P] where P = (Fo2 + 2Fc2)/3
5398 reflections(Δ/σ)max = 0.001
199 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.28 e Å3
0 constraints
xyzUiso*/Ueq
Cl10.72432 (4)−0.07747 (3)−0.201084 (13)0.02762 (8)
N10.15677 (11)0.13941 (9)−0.51877 (4)0.01712 (15)
N20.19862 (10)−0.08273 (8)−0.55312 (4)0.01549 (15)
C10.49136 (12)−0.11517 (11)−0.40861 (5)0.01843 (17)
H1B0.5057−0.1695−0.44360.022*
C20.60543 (13)−0.13482 (11)−0.33949 (5)0.02010 (18)
H2A0.6952−0.2021−0.32810.024*
C30.58327 (13)−0.05256 (11)−0.28778 (5)0.01930 (18)
C40.45136 (13)0.05008 (11)−0.30385 (5)0.01991 (18)
H4A0.43930.1057−0.26880.024*
C50.33807 (13)0.06833 (10)−0.37285 (5)0.01777 (17)
H5A0.24940.1366−0.38400.021*
C60.35547 (12)−0.01485 (10)−0.42611 (5)0.01522 (16)
C70.23567 (12)0.01388 (10)−0.49847 (5)0.01518 (16)
C80.06201 (12)0.12524 (10)−0.59018 (5)0.01704 (17)
C9−0.04641 (13)0.22408 (11)−0.63856 (5)0.02113 (19)
H9A−0.06580.3155−0.62480.025*
C10−0.12370 (13)0.18085 (12)−0.70759 (6)0.0235 (2)
H10A−0.19650.2445−0.74060.028*
C11−0.09486 (14)0.04291 (12)−0.72905 (5)0.0232 (2)
H11A−0.14740.0183−0.77600.028*
C120.00988 (13)−0.05700 (11)−0.68185 (5)0.02010 (18)
H12A0.0277−0.1488−0.69560.024*
C130.08723 (12)−0.01221 (10)−0.61242 (5)0.01645 (16)
C140.23702 (12)−0.23309 (10)−0.55279 (5)0.01539 (16)
C150.33740 (12)−0.28012 (11)−0.58889 (5)0.01818 (17)
H15A0.3838−0.2146−0.61090.022*
C160.36742 (13)−0.42709 (11)−0.59159 (5)0.02123 (19)
H16A0.4343−0.4601−0.61550.025*
C170.29783 (13)−0.52407 (11)−0.55872 (6)0.0221 (2)
H17A0.3173−0.6221−0.56110.027*
C180.19916 (14)−0.47574 (11)−0.52227 (6)0.0226 (2)
H18A0.1546−0.5413−0.49960.027*
C190.16673 (13)−0.32917 (11)−0.51960 (5)0.01932 (18)
H19A0.0990−0.2963−0.49590.023*
U11U22U33U12U13U23
Cl10.03461 (15)0.02418 (13)0.01779 (12)−0.00362 (10)0.00329 (10)0.00170 (8)
N10.0187 (3)0.0134 (3)0.0199 (4)0.0005 (3)0.0082 (3)−0.0005 (3)
N20.0178 (3)0.0120 (3)0.0166 (3)−0.0001 (3)0.0067 (3)−0.0015 (3)
C10.0184 (4)0.0169 (4)0.0200 (4)0.0007 (3)0.0075 (3)−0.0019 (3)
C20.0195 (4)0.0176 (4)0.0213 (4)0.0002 (3)0.0060 (3)−0.0005 (3)
C30.0219 (4)0.0177 (4)0.0170 (4)−0.0043 (3)0.0061 (3)0.0005 (3)
C40.0244 (4)0.0187 (4)0.0185 (4)−0.0033 (3)0.0103 (3)−0.0031 (3)
C50.0190 (4)0.0155 (4)0.0204 (4)−0.0011 (3)0.0094 (3)−0.0024 (3)
C60.0160 (4)0.0130 (4)0.0176 (4)−0.0020 (3)0.0076 (3)−0.0013 (3)
C70.0162 (4)0.0130 (4)0.0178 (4)−0.0010 (3)0.0082 (3)−0.0018 (3)
C80.0174 (4)0.0149 (4)0.0195 (4)−0.0005 (3)0.0080 (3)0.0009 (3)
C90.0217 (4)0.0173 (4)0.0248 (5)0.0015 (3)0.0096 (4)0.0044 (3)
C100.0218 (4)0.0256 (5)0.0222 (5)0.0014 (4)0.0077 (4)0.0076 (4)
C110.0222 (4)0.0286 (5)0.0178 (4)−0.0015 (4)0.0066 (3)0.0018 (4)
C120.0201 (4)0.0216 (4)0.0186 (4)−0.0015 (3)0.0074 (3)−0.0017 (3)
C130.0162 (4)0.0158 (4)0.0176 (4)−0.0012 (3)0.0069 (3)0.0004 (3)
C140.0155 (4)0.0129 (4)0.0174 (4)−0.0008 (3)0.0060 (3)−0.0022 (3)
C150.0180 (4)0.0191 (4)0.0184 (4)−0.0008 (3)0.0081 (3)−0.0032 (3)
C160.0185 (4)0.0220 (5)0.0213 (4)0.0025 (3)0.0057 (3)−0.0068 (3)
C170.0197 (4)0.0149 (4)0.0265 (5)0.0015 (3)0.0031 (4)−0.0045 (3)
C180.0226 (4)0.0143 (4)0.0304 (5)−0.0018 (3)0.0098 (4)0.0005 (4)
C190.0199 (4)0.0159 (4)0.0249 (5)−0.0010 (3)0.0117 (4)−0.0005 (3)
Cl1—C31.7418 (10)C9—C101.3845 (15)
N1—C71.3245 (12)C9—H9A0.9300
N1—C81.3902 (12)C10—C111.4083 (16)
N2—C131.3853 (12)C10—H10A0.9300
N2—C71.3856 (12)C11—C121.3853 (15)
N2—C141.4331 (12)C11—H11A0.9300
C1—C21.3921 (14)C12—C131.3960 (14)
C1—C61.3985 (13)C12—H12A0.9300
C1—H1B0.9300C14—C191.3876 (13)
C2—C31.3880 (14)C14—C151.3900 (13)
C2—H2A0.9300C15—C161.3938 (14)
C3—C41.3917 (15)C15—H15A0.9300
C4—C51.3867 (14)C16—C171.3852 (16)
C4—H4A0.9300C16—H16A0.9300
C5—C61.4026 (13)C17—C181.3880 (15)
C5—H5A0.9300C17—H17A0.9300
C6—C71.4701 (13)C18—C191.3942 (14)
C8—C91.4011 (13)C18—H18A0.9300
C8—C131.4019 (13)C19—H19A0.9300
C7—N1—C8105.16 (8)C9—C10—C11121.67 (10)
C13—N2—C7106.36 (8)C9—C10—H10A119.2
C13—N2—C14122.43 (8)C11—C10—H10A119.2
C7—N2—C14130.55 (8)C12—C11—C10121.55 (10)
C2—C1—C6120.86 (9)C12—C11—H11A119.2
C2—C1—H1B119.6C10—C11—H11A119.2
C6—C1—H1B119.6C11—C12—C13116.27 (10)
C3—C2—C1119.03 (9)C11—C12—H12A121.9
C3—C2—H2A120.5C13—C12—H12A121.9
C1—C2—H2A120.5N2—C13—C12131.22 (9)
C2—C3—C4121.33 (9)N2—C13—C8105.76 (8)
C2—C3—Cl1119.33 (8)C12—C13—C8123.03 (9)
C4—C3—Cl1119.34 (8)C19—C14—C15121.41 (9)
C5—C4—C3119.13 (9)C19—C14—N2119.64 (8)
C5—C4—H4A120.4C15—C14—N2118.87 (8)
C3—C4—H4A120.4C14—C15—C16118.94 (9)
C4—C5—C6120.83 (9)C14—C15—H15A120.5
C4—C5—H5A119.6C16—C15—H15A120.5
C6—C5—H5A119.6C17—C16—C15120.19 (9)
C1—C6—C5118.80 (9)C17—C16—H16A119.9
C1—C6—C7122.98 (8)C15—C16—H16A119.9
C5—C6—C7118.11 (8)C16—C17—C18120.35 (9)
N1—C7—N2112.64 (8)C16—C17—H17A119.8
N1—C7—C6122.71 (8)C18—C17—H17A119.8
N2—C7—C6124.59 (8)C17—C18—C19120.12 (10)
N1—C8—C9130.08 (9)C17—C18—H18A119.9
N1—C8—C13110.08 (8)C19—C18—H18A119.9
C9—C8—C13119.84 (9)C14—C19—C18118.98 (9)
C10—C9—C8117.62 (10)C14—C19—H19A120.5
C10—C9—H9A121.2C18—C19—H19A120.5
C8—C9—H9A121.2
C6—C1—C2—C3−0.36 (15)C9—C10—C11—C121.15 (16)
C1—C2—C3—C4−0.95 (15)C10—C11—C12—C13−1.15 (15)
C1—C2—C3—Cl1179.49 (8)C7—N2—C13—C12179.43 (10)
C2—C3—C4—C51.21 (15)C14—N2—C13—C12−9.02 (16)
Cl1—C3—C4—C5−179.23 (7)C7—N2—C13—C8−0.15 (10)
C3—C4—C5—C6−0.16 (15)C14—N2—C13—C8171.41 (8)
C2—C1—C6—C51.37 (14)C11—C12—C13—N2−179.23 (10)
C2—C1—C6—C7177.63 (9)C11—C12—C13—C80.28 (15)
C4—C5—C6—C1−1.11 (14)N1—C8—C13—N20.38 (10)
C4—C5—C6—C7−177.54 (9)C9—C8—C13—N2−179.76 (8)
C8—N1—C7—N20.37 (10)N1—C8—C13—C12−179.24 (9)
C8—N1—C7—C6177.69 (8)C9—C8—C13—C120.62 (15)
C13—N2—C7—N1−0.14 (10)C13—N2—C14—C19−107.24 (11)
C14—N2—C7—N1−170.76 (9)C7—N2—C14—C1962.08 (13)
C13—N2—C7—C6−177.40 (8)C13—N2—C14—C1569.63 (12)
C14—N2—C7—C611.99 (15)C7—N2—C14—C15−121.05 (11)
C1—C6—C7—N1−152.39 (9)C19—C14—C15—C160.04 (14)
C5—C6—C7—N123.89 (13)N2—C14—C15—C16−176.77 (8)
C1—C6—C7—N224.60 (14)C14—C15—C16—C170.01 (15)
C5—C6—C7—N2−159.12 (9)C15—C16—C17—C18−0.62 (15)
C7—N1—C8—C9179.70 (10)C16—C17—C18—C191.17 (15)
C7—N1—C8—C13−0.46 (10)C15—C14—C19—C180.50 (14)
N1—C8—C9—C10179.19 (10)N2—C14—C19—C18177.29 (9)
C13—C8—C9—C10−0.64 (14)C17—C18—C19—C14−1.10 (15)
C8—C9—C10—C11−0.21 (15)
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl 1-sec-butyl-2-(2-hydroxy-phen-yl)-1H-benzimidazole-5-carboxyl-ate 0.25-hydrate.

Authors:  Natarajan Arumugam; Aisyah Saad Abdul Rahim; Hasnah Osman; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08

Review 3.  Benzimidazole drugs and modulation of biotransformation enzymes.

Authors:  J Velík; V Baliharová; J Fink-Gremmels; S Bull; J Lamka; L Skálová
Journal:  Res Vet Sci       Date:  2004-04       Impact factor: 2.534

4.  Synthesis and evaluation of novel benzimidazole derivative [Bz-Im] and its radio/biological studies.

Authors:  Anjani K Tiwari; Anil K Mishra; Aruna Bajpai; Pushpa Mishra; Sweta Singh; Deepa Sinha; V K Singh
Journal:  Bioorg Med Chem Lett       Date:  2007-03-03       Impact factor: 2.823

5.  N-[(E)-4-Chloro-benzyl-idene]-N'-phenyl-benzene-1,4-diamine.

Authors:  Nor Zakiah Nor Hashim; Karimah Kassim; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-17

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  3 in total

1.  Ethyl 1-phenyl-2-[4-(trifluoro-meth-yl)phen-yl]-1H-benzimidazole-5-carboxyl-ate.

Authors:  Yeong Keng Yoon; Mohamed Ashraf Ali; Tan Soo Choon; Suhana Arshad; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-23

2.  Ethyl 2-(4-chloro-phen-yl)-1-phenyl-1H-benzimidazole-5-carboxyl-ate.

Authors:  Yeong Keng Yoon; Elumalai Manogaran; Tan Soo Choon; Suhana Arshad; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-23

3.  1-Phenyl-2-[4-(trifluoro-meth-yl)phen-yl]-1H-benzimidazole.

Authors:  K Jayamoorthy; T Mohandas; P Sakthivel; J Jayabharathi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-16
  3 in total

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