Literature DB >> 24109401

1-(2,6-Diiso-propyl-phen-yl)-1H-benzimidazole.

Sha Lai1, Yong Chen, Yan Li, Yonggang Shen, Hongwei Wu.   

Abstract

In the title compound, C19H22N2, both the benzimidazole unit and the 2,6-diiso-propyl-phenyl group are essentially planar [maximum deviations from the least-squares planes of 0.005 (1) and 0.009 (1) Å, respectively]. The dihedral angle between the two planes is 79.6 (7)°. In the crystal, mol-ecules are linked into chains along the a-axis direction by weak C-H⋯N inter-actions. The crystal structure also features C-H⋯π inter-actions, which link the chains into a three-dimensional network.

Entities:  

Year:  2013        PMID: 24109401      PMCID: PMC3793814          DOI: 10.1107/S1600536813020473

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the properties of related compounds, see: Shi et al. (2013 ▶); Cross et al. (1995 ▶); Akpinar et al. (2010 ▶); Wang et al. (2007 ▶); Mason et al. (1999 ▶). For bond lengths and angles in related structures, see: Jayamoorthy et al. (2013 ▶); Fathima et al. (2013 ▶); Geiger & Nellist (2013 ▶).

Experimental

Crystal data

C19H22N2 M = 278.39 Orthorhombic, a = 6.6471 (8) Å b = 14.1216 (18) Å c = 17.285 (2) Å V = 1622.5 (4) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 173 K 0.44 × 0.42 × 0.28 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.971, T max = 0.982 9716 measured reflections 3551 independent reflections 3133 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.088 S = 1.08 3551 reflections 194 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813020473/bg2510sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813020473/bg2510Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813020473/bg2510Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H22N2F(000) = 600
Mr = 278.39Dx = 1.140 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 5376 reflections
a = 6.6471 (8) Åθ = 2.4–27.1°
b = 14.1216 (18) ŵ = 0.07 mm1
c = 17.285 (2) ÅT = 173 K
V = 1622.5 (4) Å3Block, colorless
Z = 40.44 × 0.42 × 0.28 mm
Bruker APEXII CCD area-detector diffractometer3551 independent reflections
Radiation source: fine-focus sealed tube3133 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 0 pixels mm-1θmax = 27.1°, θmin = 1.9°
phi and ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2008)k = −18→16
Tmin = 0.971, Tmax = 0.982l = −18→22
9716 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0411P)2 + 0.2264P] where P = (Fo2 + 2Fc2)/3
3551 reflections(Δ/σ)max < 0.001
194 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C11.2274 (2)0.79599 (10)0.29080 (8)0.0303 (3)
H11.29200.78850.33940.036*
N11.32623 (17)0.80167 (9)0.22581 (7)0.0335 (3)
C21.17791 (19)0.81252 (9)0.17010 (8)0.0262 (3)
N21.02227 (16)0.80177 (8)0.28307 (6)0.0243 (2)
C31.1940 (2)0.82181 (10)0.08970 (8)0.0327 (3)
H31.32170.82180.06500.039*
C41.0203 (2)0.83093 (11)0.04764 (8)0.0366 (3)
H41.02850.8375−0.00700.044*
C50.8308 (2)0.83080 (11)0.08327 (8)0.0347 (3)
H50.71380.83730.05220.042*
C60.8096 (2)0.82147 (10)0.16281 (8)0.0284 (3)
H60.68140.82110.18720.034*
C70.9866 (2)0.81270 (8)0.20455 (7)0.0234 (3)
C80.87636 (19)0.80084 (9)0.34461 (7)0.0227 (3)
C90.8510 (2)0.88320 (9)0.38878 (7)0.0254 (3)
C100.9634 (2)0.97431 (10)0.37135 (8)0.0324 (3)
H101.03800.96520.32170.039*
C110.8185 (3)1.05673 (13)0.36039 (13)0.0604 (6)
H11A0.72431.04190.31850.091*
H11B0.89461.11400.34720.091*
H11C0.74361.06740.40840.091*
C121.1172 (4)0.99708 (15)0.43400 (12)0.0645 (6)
H12A1.04801.00630.48350.097*
H12B1.18981.05500.42020.097*
H12C1.21270.94450.43860.097*
C130.7136 (2)0.87915 (10)0.44978 (8)0.0303 (3)
H130.69410.93340.48150.036*
C140.6056 (2)0.79775 (11)0.46485 (8)0.0315 (3)
H140.51360.79630.50690.038*
C150.6306 (2)0.71811 (10)0.41892 (8)0.0292 (3)
H150.55320.66300.42920.035*
C160.76747 (19)0.71788 (10)0.35795 (7)0.0249 (3)
C170.8059 (2)0.62843 (10)0.31125 (8)0.0303 (3)
H170.85670.64790.25920.036*
C180.9704 (3)0.56985 (11)0.35044 (10)0.0421 (4)
H18A1.09240.60830.35570.063*
H18B0.99990.51380.31890.063*
H18C0.92440.54990.40180.063*
C190.6166 (3)0.56884 (13)0.29914 (12)0.0534 (5)
H19A0.57190.54320.34890.080*
H19B0.64650.51660.26360.080*
H19C0.51010.60850.27710.080*
U11U22U33U12U13U23
C10.0239 (6)0.0333 (8)0.0338 (7)0.0025 (6)−0.0026 (6)0.0005 (6)
N10.0241 (6)0.0388 (7)0.0375 (7)0.0032 (5)0.0041 (5)0.0009 (5)
C20.0238 (6)0.0226 (6)0.0324 (7)−0.0001 (5)0.0043 (5)−0.0012 (5)
N20.0211 (5)0.0284 (6)0.0234 (5)0.0027 (5)0.0009 (4)−0.0005 (4)
C30.0331 (7)0.0323 (8)0.0325 (7)−0.0025 (6)0.0124 (6)−0.0023 (6)
C40.0451 (9)0.0407 (8)0.0239 (7)−0.0053 (7)0.0070 (7)−0.0005 (6)
C50.0328 (8)0.0425 (8)0.0286 (7)−0.0065 (7)−0.0041 (6)0.0019 (6)
C60.0232 (6)0.0348 (8)0.0271 (7)−0.0021 (6)0.0015 (5)−0.0005 (6)
C70.0265 (6)0.0193 (6)0.0244 (6)−0.0011 (5)0.0041 (5)−0.0013 (5)
C80.0197 (6)0.0294 (7)0.0189 (6)0.0034 (5)−0.0001 (5)0.0015 (5)
C90.0260 (6)0.0271 (7)0.0232 (6)0.0022 (5)−0.0026 (5)0.0014 (5)
C100.0404 (8)0.0262 (7)0.0305 (7)−0.0017 (6)0.0044 (6)−0.0009 (5)
C110.0707 (13)0.0352 (9)0.0754 (13)0.0121 (9)0.0173 (11)0.0173 (9)
C120.0756 (14)0.0544 (12)0.0634 (13)−0.0329 (11)−0.0177 (11)0.0042 (9)
C130.0354 (7)0.0303 (7)0.0254 (7)0.0052 (6)0.0029 (6)−0.0026 (6)
C140.0283 (7)0.0431 (8)0.0232 (7)0.0030 (6)0.0054 (5)0.0025 (6)
C150.0271 (7)0.0322 (7)0.0283 (7)−0.0034 (6)−0.0003 (6)0.0056 (6)
C160.0249 (6)0.0274 (7)0.0226 (6)0.0028 (5)−0.0039 (5)0.0014 (5)
C170.0374 (8)0.0274 (7)0.0262 (7)−0.0015 (6)−0.0019 (6)−0.0018 (5)
C180.0470 (10)0.0309 (8)0.0485 (9)0.0066 (7)−0.0081 (8)−0.0062 (7)
C190.0466 (10)0.0429 (10)0.0706 (13)−0.0067 (8)−0.0106 (10)−0.0192 (9)
C1—N11.3038 (18)C11—H11A0.9800
C1—N21.3725 (16)C11—H11B0.9800
C1—H10.9500C11—H11C0.9800
N1—C21.3868 (18)C12—H12A0.9800
C2—C31.400 (2)C12—H12B0.9800
C2—C71.4044 (18)C12—H12C0.9800
N2—C71.3865 (16)C13—C141.380 (2)
N2—C81.4396 (15)C13—H130.9500
C3—C41.370 (2)C14—C151.387 (2)
C3—H30.9500C14—H140.9500
C4—C51.402 (2)C15—C161.3924 (19)
C4—H40.9500C15—H150.9500
C5—C61.388 (2)C16—C171.5207 (19)
C5—H50.9500C17—C191.528 (2)
C6—C71.3857 (18)C17—C181.529 (2)
C6—H60.9500C17—H171.0000
C8—C161.3963 (19)C18—H18A0.9800
C8—C91.4013 (18)C18—H18B0.9800
C9—C131.3961 (19)C18—H18C0.9800
C9—C101.5181 (19)C19—H19A0.9800
C10—C111.522 (2)C19—H19B0.9800
C10—C121.524 (2)C19—H19C0.9800
C10—H101.0000
N1—C1—N2114.39 (12)C10—C11—H11C109.5
N1—C1—H1122.8H11A—C11—H11C109.5
N2—C1—H1122.8H11B—C11—H11C109.5
C1—N1—C2104.30 (11)C10—C12—H12A109.5
N1—C2—C3130.20 (12)C10—C12—H12B109.5
N1—C2—C7110.46 (11)H12A—C12—H12B109.5
C3—C2—C7119.33 (12)C10—C12—H12C109.5
C1—N2—C7105.78 (11)H12A—C12—H12C109.5
C1—N2—C8126.64 (11)H12B—C12—H12C109.5
C7—N2—C8127.52 (11)C14—C13—C9121.13 (13)
C4—C3—C2118.11 (13)C14—C13—H13119.4
C4—C3—H3120.9C9—C13—H13119.4
C2—C3—H3120.9C13—C14—C15120.34 (12)
C3—C4—C5121.57 (13)C13—C14—H14119.8
C3—C4—H4119.2C15—C14—H14119.8
C5—C4—H4119.2C14—C15—C16120.90 (13)
C6—C5—C4121.77 (14)C14—C15—H15119.5
C6—C5—H5119.1C16—C15—H15119.5
C4—C5—H5119.1C15—C16—C8117.50 (12)
C7—C6—C5115.96 (12)C15—C16—C17120.90 (12)
C7—C6—H6122.0C8—C16—C17121.48 (11)
C5—C6—H6122.0C16—C17—C19113.06 (12)
C6—C7—N2131.68 (12)C16—C17—C18109.53 (11)
C6—C7—C2123.26 (11)C19—C17—C18110.57 (13)
N2—C7—C2105.06 (11)C16—C17—H17107.8
C16—C8—C9122.96 (11)C19—C17—H17107.8
C16—C8—N2118.61 (11)C18—C17—H17107.8
C9—C8—N2118.43 (11)C17—C18—H18A109.5
C13—C9—C8117.14 (12)C17—C18—H18B109.5
C13—C9—C10120.43 (12)H18A—C18—H18B109.5
C8—C9—C10122.42 (12)C17—C18—H18C109.5
C9—C10—C11111.19 (13)H18A—C18—H18C109.5
C9—C10—C12111.60 (13)H18B—C18—H18C109.5
C11—C10—C12110.58 (15)C17—C19—H19A109.5
C9—C10—H10107.8C17—C19—H19B109.5
C11—C10—H10107.8H19A—C19—H19B109.5
C12—C10—H10107.8C17—C19—H19C109.5
C10—C11—H11A109.5H19A—C19—H19C109.5
C10—C11—H11B109.5H19B—C19—H19C109.5
H11A—C11—H11B109.5
N2—C1—N1—C20.30 (16)C7—N2—C8—C9−100.77 (14)
C1—N1—C2—C3−179.65 (15)C16—C8—C9—C131.78 (19)
C1—N1—C2—C7−0.23 (15)N2—C8—C9—C13−177.79 (12)
N1—C1—N2—C7−0.25 (16)C16—C8—C9—C10−177.13 (12)
N1—C1—N2—C8−177.75 (12)N2—C8—C9—C103.30 (18)
N1—C2—C3—C4179.48 (14)C13—C9—C10—C11−54.09 (19)
C7—C2—C3—C40.1 (2)C8—C9—C10—C11124.78 (15)
C2—C3—C4—C5−0.2 (2)C13—C9—C10—C1269.89 (19)
C3—C4—C5—C60.0 (2)C8—C9—C10—C12−111.24 (16)
C4—C5—C6—C70.2 (2)C8—C9—C13—C14−1.0 (2)
C5—C6—C7—N2−179.57 (13)C10—C9—C13—C14177.94 (13)
C5—C6—C7—C2−0.32 (19)C9—C13—C14—C15−0.5 (2)
C1—N2—C7—C6179.44 (14)C13—C14—C15—C161.4 (2)
C8—N2—C7—C6−3.1 (2)C14—C15—C16—C8−0.60 (19)
C1—N2—C7—C20.09 (14)C14—C15—C16—C17175.54 (13)
C8—N2—C7—C2177.56 (12)C9—C8—C16—C15−1.00 (18)
N1—C2—C7—C6−179.34 (13)N2—C8—C16—C15178.57 (11)
C3—C2—C7—C60.16 (19)C9—C8—C16—C17−177.12 (12)
N1—C2—C7—N20.09 (14)N2—C8—C16—C172.45 (18)
C3—C2—C7—N2179.58 (12)C15—C16—C17—C1936.52 (19)
C1—N2—C8—C16−103.40 (15)C8—C16—C17—C19−147.49 (14)
C7—N2—C8—C1679.63 (16)C15—C16—C17—C18−87.28 (16)
C1—N2—C8—C976.19 (17)C8—C16—C17—C1888.71 (15)
D—H···AD—HH···AD···AD—H···A
C6—H6···N1i0.952.473.4040 (18)168
C14—H14···Cg3ii0.952.683.5908 (16)150
C18—H18B···Cg2iii0.982.793.5314 (17)125
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C2–C7 and C8/C9/C13–C16 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6⋯N1i 0.952.473.4040 (18)168
C14—H14⋯Cg3ii 0.952.683.5908 (16)150
C18—H18BCg2iii 0.982.793.5314 (17)125

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  New 4-point pharmacophore method for molecular similarity and diversity applications: overview of the method and applications, including a novel approach to the design of combinatorial libraries containing privileged substructures.

Authors:  J S Mason; I Morize; P R Menard; D L Cheney; C Hulme; R F Labaudiniere
Journal:  J Med Chem       Date:  1999-08-26       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  6-Chloro-2-(thio-phen-2-yl)-1-[(thio-phen-2-yl)meth-yl]-1H-benzimidazole.

Authors:  David K Geiger; Michael R Nellist
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-30

4.  1-Phenyl-2-[4-(trifluoro-meth-yl)phen-yl]-1H-benzimidazole.

Authors:  K Jayamoorthy; T Mohandas; P Sakthivel; J Jayabharathi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-16

5.  2-[4-(Trifluoro-meth-oxy)phen-yl]-1H-benzimidazole.

Authors:  Nikhath Fathima; M S Krishnamurthy; Noor Shahina Begum
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-19
  5 in total

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