Literature DB >> 24526997

2-(Naphthalen-1-yl)-1-phenyl-1H-benzimid-azole benzene hemisolvate.

N Srinivasan1, A Thiruvalluvar2, S Rosepriya2, S M Prakash3, R J Butcher4.   

Abstract

In the title compound, C23H16N2·0.5C6H6, the benzimidazole unit [maximum deviation = 0.0258 (6) Å] and the naphthalene ring system [maximum deviation = 0.0254 (6) Å] are both essentially planar and make a dihedral angle of 61.955 (17)°. The imidazole ring makes dihedral angle of 61.73 (4)° with the phenyl ring. An intra-molecular C-H⋯N hydrogen bond generates an S(6) ring motif. In the crystal, seven weak C-H⋯π inter-actions involving the fused ring system, the benzene solvent mol-ecule, the imidazole phenyl rings are observed, leading to a three-dimensional architecture.

Entities:  

Year:  2013        PMID: 24526997      PMCID: PMC3914093          DOI: 10.1107/S160053681303331X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For linear and non-linear optical properties and the thermal stability of benzimidazole-based chromophores, see: Cross et al. (1995 ▶). For imidazole as a component of vitamin B12, purine and caffeine, see: Brown (2005 ▶). For commercial and therapeutic applications of substituted benzimidazole derivatives, see: Spasov et al. (1999 ▶). For related crystal structures, see: Jayamoorthy et al. (2012 ▶, 2013 ▶); Rosepriya et al. (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C23H16N2·0.5C6H6 M = 359.43 Triclinic, a = 8.5529 (3) Å b = 9.4517 (3) Å c = 11.8936 (3) Å α = 86.334 (2)° β = 89.838 (2)° γ = 75.051 (3)° V = 926.94 (5) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 123 K 0.72 × 0.59 × 0.42 mm

Data collection

Agilent Xcalibur Ruby Gemini diffractometer Absorption correction: analytical [CrysAlis PRO (Agilent, 2012 ▶), using a multifaceted crystal model (Clark & Reid, 1995 ▶)] T min = 0.963, T max = 0.977 57784 measured reflections 12045 independent reflections 9086 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.160 S = 1.05 12045 reflections 253 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.42 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL2013 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681303331X/jj2179sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681303331X/jj2179Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681303331X/jj2179Isup3.cdx Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681303331X/jj2179Isup4.cml Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H16N2·0.5C6H6Z = 2
Mr = 359.43F(000) = 378
Triclinic, P1Dx = 1.288 Mg m3
Hall symbol: -P 1Melting point: 392 K
a = 8.5529 (3) ÅMo Kα radiation, λ = 0.71069 Å
b = 9.4517 (3) ÅCell parameters from 15125 reflections
c = 11.8936 (3) Åθ = 3.0–41.0°
α = 86.334 (2)°µ = 0.08 mm1
β = 89.838 (2)°T = 123 K
γ = 75.051 (3)°Prism, colourless
V = 926.94 (5) Å30.72 × 0.59 × 0.42 mm
Agilent Xcalibur Ruby Gemini diffractometer12045 independent reflections
Radiation source: Enhance (Mo) X-ray Source9086 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.063
Detector resolution: 10.5081 pixels mm-1θmax = 41.1°, θmin = 3.0°
ω scansh = −15→15
Absorption correction: analytical [CrysAlis PRO (Agilent, 2012), using a multifaceted crystal model (Clark & Reid, 1995)]k = −17→17
Tmin = 0.963, Tmax = 0.977l = −21→21
57784 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.076P)2 + 0.0921P] where P = (Fo2 + 2Fc2)/3
12045 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.42 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
xyzUiso*/Ueq
N10.67234 (7)0.54147 (6)0.17737 (5)0.0196 (1)
N30.58580 (7)0.34162 (7)0.23145 (5)0.0218 (1)
C20.54214 (8)0.48307 (7)0.20135 (6)0.0197 (1)
C40.86569 (9)0.16857 (8)0.25577 (6)0.0230 (2)
C51.02936 (9)0.16196 (8)0.24850 (6)0.0241 (2)
C61.08319 (9)0.28681 (9)0.21552 (6)0.0237 (2)
C70.97488 (9)0.42165 (8)0.18733 (6)0.0222 (2)
C80.81081 (8)0.42675 (7)0.19437 (6)0.0194 (1)
C90.75441 (8)0.30379 (7)0.22843 (6)0.0200 (2)
C110.66581 (8)0.69261 (7)0.15057 (5)0.0190 (1)
C120.72504 (9)0.73392 (8)0.04813 (6)0.0217 (2)
C130.71614 (9)0.88153 (8)0.02178 (6)0.0247 (2)
C140.64697 (9)0.98608 (8)0.09676 (7)0.0253 (2)
C150.58828 (9)0.94403 (8)0.19913 (7)0.0259 (2)
C160.59863 (9)0.79665 (8)0.22698 (6)0.0233 (2)
C210.37491 (8)0.57825 (7)0.19356 (6)0.0194 (2)
C220.31678 (9)0.65122 (8)0.09166 (6)0.0230 (2)
C230.16256 (9)0.75196 (9)0.08347 (6)0.0252 (2)
C240.07012 (9)0.78075 (8)0.17773 (7)0.0243 (2)
C250.02654 (9)0.73198 (9)0.38062 (7)0.0270 (2)
C260.07884 (10)0.65771 (10)0.48214 (7)0.0291 (2)
C270.23194 (10)0.55553 (10)0.49096 (6)0.0271 (2)
C280.32981 (9)0.52890 (8)0.39875 (6)0.0225 (2)
C290.27828 (8)0.60281 (7)0.29210 (5)0.0187 (2)
C300.12426 (8)0.70669 (8)0.28362 (6)0.0210 (2)
C1A0.55334 (12)0.12597 (10)0.47928 (7)0.0319 (2)
C2A0.39180 (12)0.13022 (10)0.46027 (8)0.0329 (2)
C3A0.66115 (11)−0.00416 (11)0.51904 (7)0.0315 (2)
H40.830100.084000.278600.0276*
H51.106680.071190.266160.0289*
H61.196120.278820.212450.0285*
H71.010840.505990.164430.0266*
H120.771090.66228−0.003340.0261*
H130.757460.91078−0.047630.0297*
H140.639781.086780.077950.0303*
H150.541071.015930.250130.0311*
H160.560280.767190.297410.0279*
H220.381290.633410.026350.0276*
H230.122950.799730.012630.0302*
H24−0.031680.851330.172080.0292*
H25−0.076250.801100.375230.0323*
H260.012100.675030.546420.0350*
H270.267700.504600.561470.0325*
H280.432880.460460.406320.0270*
H1A0.589970.212060.465070.0383*
H2A0.317900.219180.433200.0394*
H3A0.77144−0.006850.532110.0378*
U11U22U33U12U13U23
N10.0184 (2)0.0182 (2)0.0204 (2)−0.0019 (2)0.0024 (2)0.0005 (2)
N30.0201 (2)0.0205 (2)0.0231 (3)−0.0031 (2)0.0015 (2)0.0016 (2)
C20.0188 (2)0.0205 (3)0.0184 (2)−0.0031 (2)0.0016 (2)0.0005 (2)
C40.0238 (3)0.0194 (3)0.0233 (3)−0.0013 (2)0.0001 (2)0.0004 (2)
C50.0226 (3)0.0222 (3)0.0236 (3)0.0011 (2)−0.0003 (2)−0.0009 (2)
C60.0192 (3)0.0260 (3)0.0234 (3)−0.0009 (2)0.0011 (2)−0.0025 (2)
C70.0197 (3)0.0226 (3)0.0230 (3)−0.0034 (2)0.0023 (2)−0.0016 (2)
C80.0183 (2)0.0191 (3)0.0186 (2)−0.0013 (2)0.0016 (2)−0.0009 (2)
C90.0199 (3)0.0192 (3)0.0190 (3)−0.0021 (2)0.0011 (2)−0.0003 (2)
C110.0184 (2)0.0184 (2)0.0186 (2)−0.0021 (2)0.0010 (2)0.0001 (2)
C120.0222 (3)0.0213 (3)0.0198 (3)−0.0026 (2)0.0024 (2)0.0003 (2)
C130.0248 (3)0.0240 (3)0.0238 (3)−0.0050 (2)−0.0014 (2)0.0050 (2)
C140.0230 (3)0.0195 (3)0.0315 (3)−0.0032 (2)−0.0053 (3)0.0023 (2)
C150.0245 (3)0.0214 (3)0.0303 (3)−0.0021 (2)0.0003 (3)−0.0062 (2)
C160.0242 (3)0.0235 (3)0.0215 (3)−0.0045 (2)0.0034 (2)−0.0040 (2)
C210.0175 (2)0.0196 (3)0.0198 (3)−0.0028 (2)0.0003 (2)0.0004 (2)
C220.0221 (3)0.0252 (3)0.0199 (3)−0.0036 (2)−0.0003 (2)0.0019 (2)
C230.0241 (3)0.0251 (3)0.0238 (3)−0.0032 (2)−0.0043 (2)0.0041 (2)
C240.0201 (3)0.0219 (3)0.0282 (3)−0.0008 (2)−0.0039 (2)0.0000 (2)
C250.0202 (3)0.0296 (3)0.0287 (3)−0.0011 (3)0.0032 (2)−0.0065 (3)
C260.0264 (3)0.0355 (4)0.0246 (3)−0.0055 (3)0.0067 (3)−0.0059 (3)
C270.0273 (3)0.0326 (4)0.0199 (3)−0.0054 (3)0.0027 (2)0.0001 (3)
C280.0211 (3)0.0245 (3)0.0201 (3)−0.0030 (2)0.0004 (2)0.0004 (2)
C290.0167 (2)0.0191 (3)0.0194 (3)−0.0033 (2)−0.0001 (2)−0.0008 (2)
C300.0179 (2)0.0206 (3)0.0233 (3)−0.0023 (2)−0.0004 (2)−0.0027 (2)
C1A0.0385 (4)0.0284 (4)0.0274 (3)−0.0071 (3)0.0019 (3)0.0013 (3)
C2A0.0360 (4)0.0282 (4)0.0290 (4)0.0004 (3)0.0000 (3)0.0030 (3)
C3A0.0301 (4)0.0350 (4)0.0271 (3)−0.0047 (3)0.0005 (3)−0.0001 (3)
N1—C21.3861 (9)C27—C281.3741 (11)
N1—C81.3892 (9)C28—C291.4221 (9)
N1—C111.4304 (8)C29—C301.4249 (10)
N3—C21.3180 (9)C4—H40.9500
N3—C91.3943 (9)C5—H50.9500
C2—C211.4798 (10)C6—H60.9500
C4—C51.3878 (11)C7—H70.9500
C4—C91.4022 (10)C12—H120.9500
C5—C61.4066 (11)C13—H130.9500
C6—C71.3903 (11)C14—H140.9500
C7—C81.3941 (11)C15—H150.9500
C8—C91.4055 (9)C16—H160.9500
C11—C121.3897 (10)C22—H220.9500
C11—C161.3939 (10)C23—H230.9500
C12—C131.3928 (10)C24—H240.9500
C13—C141.3892 (11)C25—H250.9500
C14—C151.3892 (12)C26—H260.9500
C15—C161.3912 (10)C27—H270.9500
C21—C221.3825 (10)C28—H280.9500
C21—C291.4286 (9)C1A—C2A1.3906 (15)
C22—C231.4131 (11)C1A—C3A1.3891 (14)
C23—C241.3708 (11)C2A—C3Ai1.3876 (14)
C24—C301.4191 (11)C1A—H1A0.9500
C25—C261.3724 (12)C2A—H2A0.9500
C25—C301.4189 (11)C3A—H3A0.9500
C26—C271.4120 (13)
C2—N1—C8106.49 (5)C5—C4—H4121.00
C2—N1—C11126.57 (6)C9—C4—H4121.00
C8—N1—C11126.72 (6)C4—C5—H5119.00
C2—N3—C9104.76 (6)C6—C5—H5119.00
N1—C2—N3113.12 (6)C5—C6—H6119.00
N1—C2—C21120.27 (6)C7—C6—H6119.00
N3—C2—C21126.61 (6)C6—C7—H7122.00
C5—C4—C9118.02 (7)C8—C7—H7122.00
C4—C5—C6121.39 (7)C11—C12—H12120.00
C5—C6—C7121.50 (7)C13—C12—H12120.00
C6—C7—C8116.58 (7)C12—C13—H13120.00
N1—C8—C7131.99 (6)C14—C13—H13120.00
N1—C8—C9105.10 (6)C13—C14—H14120.00
C7—C8—C9122.85 (6)C15—C14—H14120.00
N3—C9—C4129.80 (6)C14—C15—H15120.00
N3—C9—C8110.53 (6)C16—C15—H15120.00
C4—C9—C8119.65 (7)C11—C16—H16120.00
N1—C11—C12119.52 (6)C15—C16—H16120.00
N1—C11—C16119.59 (6)C21—C22—H22120.00
C12—C11—C16120.89 (6)C23—C22—H22120.00
C11—C12—C13119.26 (7)C22—C23—H23120.00
C12—C13—C14120.16 (7)C24—C23—H23120.00
C13—C14—C15120.30 (7)C23—C24—H24120.00
C14—C15—C16120.01 (7)C30—C24—H24120.00
C11—C16—C15119.37 (7)C26—C25—H25120.00
C2—C21—C22119.43 (6)C30—C25—H25120.00
C2—C21—C29120.29 (6)C25—C26—H26120.00
C22—C21—C29120.13 (6)C27—C26—H26120.00
C21—C22—C23120.80 (7)C26—C27—H27120.00
C22—C23—C24120.00 (7)C28—C27—H27120.00
C23—C24—C30120.97 (7)C27—C28—H28120.00
C26—C25—C30120.75 (7)C29—C28—H28120.00
C25—C26—C27119.94 (8)C2A—C1A—C3A120.00 (9)
C26—C27—C28120.78 (7)C1A—C2A—C3Ai119.81 (9)
C27—C28—C29120.63 (7)C1A—C3A—C2Ai120.19 (9)
C21—C29—C28122.80 (6)C2A—C1A—H1A120.00
C21—C29—C30118.72 (6)C3A—C1A—H1A120.00
C28—C29—C30118.48 (6)C1A—C2A—H2A120.00
C24—C30—C25121.24 (7)C3Ai—C2A—H2A120.00
C24—C30—C29119.33 (6)C1A—C3A—H3A120.00
C25—C30—C29119.42 (6)C2Ai—C3A—H3A120.00
C8—N1—C2—N3−0.31 (8)C16—C11—C12—C13−0.28 (11)
C8—N1—C2—C21178.80 (6)N1—C11—C16—C15−178.15 (7)
C11—N1—C2—N3−175.10 (6)C12—C11—C16—C151.18 (11)
C11—N1—C2—C214.01 (10)C11—C12—C13—C14−0.76 (11)
C2—N1—C8—C7−177.27 (8)C12—C13—C14—C150.90 (12)
C2—N1—C8—C9−0.10 (7)C13—C14—C15—C160.00 (12)
C11—N1—C8—C7−2.50 (12)C14—C15—C16—C11−1.03 (12)
C11—N1—C8—C9174.68 (6)C2—C21—C22—C23−174.88 (7)
C2—N1—C11—C12−120.91 (8)C29—C21—C22—C230.72 (11)
C2—N1—C11—C1658.42 (10)C2—C21—C29—C28−5.79 (10)
C8—N1—C11—C1265.33 (9)C2—C21—C29—C30173.63 (6)
C8—N1—C11—C16−115.34 (8)C22—C21—C29—C28178.65 (7)
C9—N3—C2—N10.57 (8)C22—C21—C29—C30−1.92 (10)
C9—N3—C2—C21−178.47 (7)C21—C22—C23—C241.44 (12)
C2—N3—C9—C4177.86 (7)C22—C23—C24—C30−2.34 (12)
C2—N3—C9—C8−0.62 (8)C23—C24—C30—C25−177.62 (8)
N1—C2—C21—C2260.23 (9)C23—C24—C30—C291.09 (11)
N1—C2—C21—C29−115.36 (7)C30—C25—C26—C270.42 (13)
N3—C2—C21—C22−120.80 (8)C26—C25—C30—C24178.77 (8)
N3—C2—C21—C2963.62 (10)C26—C25—C30—C290.05 (13)
C9—C4—C5—C60.43 (11)C25—C26—C27—C28−0.17 (13)
C5—C4—C9—N3−178.03 (7)C26—C27—C28—C29−0.58 (13)
C5—C4—C9—C80.34 (10)C27—C28—C29—C21−179.54 (7)
C4—C5—C6—C7−0.89 (11)C27—C28—C29—C301.04 (11)
C5—C6—C7—C80.51 (11)C21—C29—C30—C241.04 (10)
C6—C7—C8—N1177.03 (7)C21—C29—C30—C25179.78 (7)
C6—C7—C8—C90.28 (11)C28—C29—C30—C24−179.51 (7)
N1—C8—C9—N30.45 (8)C28—C29—C30—C25−0.77 (10)
N1—C8—C9—C4−178.22 (6)C3A—C1A—C2A—C3Ai−0.10 (13)
C7—C8—C9—N3177.95 (7)C2A—C1A—C3A—C2Ai0.10 (14)
C7—C8—C9—C4−0.71 (11)C1A—C2A—C3Ai—C1Ai0.10 (13)
N1—C11—C12—C13179.04 (7)
D—H···AD—HH···AD···AD—H···A
C28—H28···N30.952.613.2113 (10)121
C7—H7···Cg4ii0.952.753.6019 (8)150
C15—H15···Cg8iii0.952.993.6981 (9)132
C15—H15···Cg8iv0.952.993.6981 (9)132
C22—H22···Cg1v0.952.913.6478 (8)136
C24—H24···Cg3vi0.952.763.4888 (9)134
C26—H26···Cg2iv0.952.873.5801 (9)133
C27—H27···Cg1iv0.952.973.7258 (8)137
Table 1

Hydrogen-bond geometry (Å, °)

Cg1, Cg2, Cg3, Cg4 and Cg8 are the centroids of the N1/C2/N3/C9/C8 imidazole ring, the C4–C9 fused benzene ring, the C11–C16 phenyl ring, the C21–C24,C30/C29 fused benzene ring and the C1A,C2A,C3A′,C1A′,C2A′,C3A benzene ring, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C28—H28⋯N30.952.613.2113 (10)121
C7—H7⋯Cg4i 0.952.753.6019 (8)150
C15—H15⋯Cg8ii 0.952.993.6981 (9)132
C15—H15⋯Cg8iii 0.952.993.6981 (9)132
C22—H22⋯Cg1iv 0.952.913.6478 (8)136
C24—H24⋯Cg3v 0.952.763.4888 (9)134
C26—H26⋯Cg2iii 0.952.873.5801 (9)133
C27—H27⋯Cg1iii 0.952.973.7258 (8)137

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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