| Literature DB >> 23418957 |
Olga Golubnitschaja1, Kristina Yeghiazaryan, Vincenzo Costigliola, Daniela Trog, Michael Braun, Manuel Debald, Walther Kuhn, Hans H Schild.
Abstract
Breast cancer is a multifactorial disease. A spectrum of internal and external factors contributes to the disease promotion such as a genetic predisposition, chronic inflammatory processes, exposure to toxic compounds, abundant stress factors, a shift-worker job, etc. The cumulative effects lead to high incidence of breast cancer in populations worldwide. Breast cancer in the USA is currently registered with the highest incidence rates amongst all cancer related patient cohorts. Currently applied diagnostic approaches are frequently unable to recognise early stages in tumour development that impairs individual outcomes. Early diagnosis has been demonstrated to be highly beneficial for significantly enhanced therapy efficacy and possibly full recovery. Actual paper shows that the elaboration of an integrative diagnostic approach combining several levels of examinations creates a robust platform for the reliable risk assessment, targeted preventive measures and more effective treatments tailored to the person in the overall task of breast cancer management. The levels of examinations are proposed, and innovative technological approaches are described in the paper. The absolute necessity to create individual patient profiles and extended medical records is justified for the utilising by routine medical services. Expert recommendations are provided to promote further developments in the field.Entities:
Year: 2013 PMID: 23418957 PMCID: PMC3615949 DOI: 10.1186/1878-5085-4-6
Source DB: PubMed Journal: EPMA J ISSN: 1878-5077 Impact factor: 6.543
Figure 1A. Estimated cancer incidence in USA in 2009; B. Cancer related mortality as registered in USA in 2009; data adapted from [2].
Figure 2Moving from basic research to clinical implementation: basic steps in creating the robust diagnostic platform and treatments tailored to the person.
Figure 3Image of the characteristic classes of comets (representing intact and damaged DNA) are shown for circulating leucocytes [35].
Figure 4Diagrams estimating a predictive power of the comet-fractions (comet class I and IV), further utilised in the construction of diagnostic windows for breast cancer risk assessment (A, B and C); according to the diagnosis, the recruited patients are grouped as follows: pre-menopausal women with benign alterations in breast tissue (G1); post-menopausal women with benign alterations in breast tissue (G2); invasive lobular & ductal carcinomas in pre-menopausal women (G3); invasive lobular & ductal carcinomas in post-menopausal women (G4); data taken from [36]. Obviously, the diagnostic windows with the comet class IV patterns can be effective only when the hormonal status is considered as one of the selection parameters for subgrouping the patients and concomitant utilisation of the analytical approach proposed by this study.
Figure 5Protein mapping in circulating leucocytes of breast cancer patients; first-dimensional separation was performed in immobilised pH gradient (IPG) strips (Bio-Rad, USA) in the range of IP 4–7. Following first-dimensional separation, the extruded IPG-strips were equilibrated in gel equilibration buffer I (50 mM Tris–HCl, 6 M urea, 30% glycerol, 2% SDS, 1% DTT), followed by equilibration in buffer II (50 mM Tris–HCl, 6 M urea, 30% glycerol, 2% SDS and 260 mM iodacetamide) for 10 min before loading them onto polyacrylamide gels (12% SDS-PAGE) for the second-dimensional resolution in Mini-PROTEAN 3 (Bio-Rad). Altogether, 74 proteins were consequently identified by MALDI-TOF analysis; data taken from [11].
Protein profile alterations in breast cancer and under radiotherapy
| CATA_HUMAN | Catalase | 5, 9, 10, 11, 14, 18, | anti-oxidant defence and detoxification protein [ | Individual reaction ⬆ ⬇ | |||
| PROF1_HUMAN | Profilin-1 | 1, 2, 11, | Microfilamental network cell-migration related protein [ | ||||
| ACTG_HUMAN | Actin, cytoplasmic 2 (Gamma-actin) | 1, 2, 11, 14, 18, | Microfilamental network protein [ | Individual reaction ⬆ ⬇ | |||
| CRTC_HUMAN | Calreticulin precursor CRP55 | 2, 11, 12, 17, 18, | Endoplasmic reticulum calcium-storage protein regulating focal adhesion and cell motility [ | Individual reaction ⬆ ➜ ⬇ | |||
| BLVRB_HUMAN | Flavin reductase, NADHP-dependent reductase | 3, 6, 9, 11, 18, | Riboflavin biosynthesis pathway [ | ||||
| K1C10_HUMAN | Keratin, type I cytoskeletal 10 | 1, 2, 11, 18, | Microfilamental network protein [ | ||||
| CLIC1_HUMAN | Chloride intracellular channel protein 1 | 8, 11, 14, | Channel, osmosis, Ca2+-dependent apoptosis-related protein [ | ⬇ | Individual reaction ⬆ ⬇ | ||
| HS90B_HUMAN | Heat shock protein HSP 90-beta | 12, 13, 14, 11, 17, 18, | Stress response protein [ | ||||
| RINI_HUMAN | Placental ribonuclease inhibitor | 3, 9, 12, 14, 17, | RNA/nucleotide turnover pathway [ | ||||
| PPIA_HUMAN | Peptidyl-prolyl cis-trans isomerase A | 4, 11, 12, 14, 17, | Cyclophilin A is involved in protein folding, assembly, transportation [ | Individual reaction ⬆ ➜ ⬇ | |||
| | | not identified protein | | | Individual reaction ⬆ ⬇ | ||
| | | not identified protein | | | Individual reaction ⬆ ⬇ | ||
| VIME_HUMAN | Vimentin | 1, 2, 11, 14, 18, | Microfilamental network cell-migration related protein [ | ⬇ | Individual reaction ⬆ ➜ ⬇ | ||
| CAH1_HUMAN | Carbonic anhydrase I | 5, 11, 18 | Energy metabolism related protein [ | ⬇ | Individual reaction ⬆ ⬇ | ||
| AMPL_HUMAN | Cytosol aminopeptidase | 4, 11, 14 | Regulatory protein-modification enzyme [ | ||||
| EFTU_HUMAN | Elongation factor Tu, mitochondrial precursor | 7, | Mitochondrial protein synthesis machinery, critical role to maintain the translational fidelity [ | Individual reaction ⬆ ➜ ⬇ | |||
| GDIS_HUMAN | Rho GDP-dissociation inhibitor 2 (Rho GDIß) | 1, 2, 11, 12, 14, 17, | LyDGI plays a role in the onset of apoptosis and cell migration [ | Individual reaction ⬆ ⬇ | |||
| 1433Z_HUMAN | 14-3-3 protein zeta/delta (protein kinase C inhibitor) | 11, 12, 14, 17, 18, | Cell-cycle checkpoint, stress response protein [ | ||||
| S10A9_HUMAN | Protein S100-A9, Calgranulin | 2, 11, 14, 18, | Ca2+-dependent cell-migration related protein [ | ⬆ | Individual reaction ⬆ ➜ ⬇ | ||
| | | not identified protein | | | Individual reaction ⬆ ⬇ | ||
| PDIA1_HUMAN | Protein disulfide-isomerase precursor, PDI | 4, 14, 9, 17, 18, | Stress-related protein modification enzyme [ | ⬇ | Individual reaction ⬆ ⬇ | ||
| | | not identified protein | | | Individual reaction ⬆ ⬇ | ||
| TCPB_HUMAN | T-complex protein 1 subunit beta | 4, | A member of chaperons family [ | individual upregulation ⬆ 2x T=0,15 | |||
| ACTB_HUMAN | Actin, cytoplasmic 1 (Beta-actin) | 1, 2, 11, 14, 18, | Microfilamental network protein [ | slightly increased ⬆ 1,5x T=0,16 | Individual reaction ⬆ ➜ ⬇ | ||
| TPIS_HUMAN | Triosephosphate isomerase | 5, 7, | Energy metabolism related protein [ | individual upregulation ⬆ 2x T=0,2 | Individual reaction ⬆ ⬇ | ||
| | ANXA1-HUMAN | Annexin A1 (Calpactin II) | 9, 11, 14, 17, 18, | Ca2+-dependent phospholipid-binding proteins, potential anti-inflammatory activity [ | individual upregulation ⬆ 2x T=0,2 | ||
| S10A8_HUMAN | Protein S100-A8, Calgranulin | 2, 11, 14, 18, | Ca2+-dependent cell-migration / tumour related protein [ | homogeneous ⬆ 2,0x T=0,24 | Individual suppression ⬇ | ||
| CAPZB_HUMAN | F-actin-capping protein subunit beta (CapZ beta) | 1, 2, 11, 14, 18, | Microfilamental network protein [ | slightly increased ⬆ T=0,2 | Individual reaction ⬆ ⬇ | ||
| PRDX6_HUMAN | Peroxiredoxin-6 | 9, 10, 11, 14, 17, 18, | Multifuctional anti-oxidant, defence, tumour-invasion and metastases related protein [ | slightly increased T=0,2 | Individual reaction ⬆ ⬇ | ||
| FIBG_HUMAN | Fibrinogen gamma chain | 11, 17, | Microfilamental network cell-migration related protein [ | homogeneous ⬆ 1,5x T=0,24 | Individual reaction ⬆ ➜ ⬇ | ||
| CH60_HUMAN | 60 kDa heat shock protein | 4, 5, 7, 11, 13, 17, | Mitochondrial stress response protein,protein-folding [ | slightly increased homogeneous level T=0,25 | |||
| Q5U077_HUMAN | L-lactate dehydrogenase B | 5, 7, 11, | Energy metabolism related protein [ | slightly increased ⬆ 1,5x | Individual reaction ⬆ ⬇ | ||
| Q96C61_HUMAN | FLNA protein | 1, 2, 11, 14, | Filamin A - actin binding protein has essential role in intercellular junctions [ | homogeneous ⬆ 1,5x | Individual reaction ⬆ ⬇ | ||
| TSP1_HUMAN | Thrombospondin-1 precursor | 2, 15, 11, 14, 17, | The matricellular protein regulating cell adhesion and motility during tissue remodelling, in fibrogenesis & angiogenesis [ | Individual induction ⬆ T=0,29 | Individual reaction ⬆ ⬇ | ||
| CAH2_HUMAN | Carbonic anhydrase II | 5, 11, 18, | Energy metabolism related protein [ | Individual heterogeneous | Individual reaction ⬆ ⬇ | ||
| FIBB_HUMAN | Fibrinogen beta chain precursor | 11, 17, | Microfilamental network cell-migration related protein [ | Individual heterogeneous | Individual reaction ⬆ ➜ ⬇ | ||
| WDR1_HUMAN | WD repeat-containing protein 1 | 4, 12, 11, 14, | Cell-cycle and proteolytic machinery related protein [ | Individual heterogeneous | Individual reaction ⬆ ➜ ⬇ | ||
| NUAM_HUMAN | NADH-ubiquinone oxidoreductase 75 kDa | 5, 7, 9, 11, 14, | Mitochondrial energy metabolism related protein [ | highly heterogeneous | Individual reaction ⬆ ⬇ | ||
| ANXA6_HUMAN | Annexin A6 (P70) | 2, 8, 11, 14, 16, 17, | Membrane architecture and signalling protein [ | Individual induction | Individual induction | ||
| HSP7C_HUMAN | Heat shock cognate 71 kDa protein | 4, 5, 11, 13, 14, 17, 18, | Stress response protein,chaperone, ATPase [ | Individual heterogeneous | Individual reaction ⬆ ➜ ⬇ | ||
| ATPA_HUMAN | ATP-synthase, H+ transporting mitochondrial protein | 5, 7, 8, 11, 18, | Mitochondrial energy metabolism related protein [ | Individual heterogeneous | Individual reaction ⬆ ⬇ | ||
| 1433B_HUMAN | 14-3-3 protein beta/alpha (protein- kinase-C inhibitor) | 4, 11, 12, 14, 17, | Cell-cycle checkpoint, stress response protein [ | highly heterogeneous | |||
| MMP9_HUMAN | Matrix metalloproteinase-9 | 11, 14, 15, 18, | MMP9 Multifunctional tissue-remodeling protein [ | highly heterogeneous | Individual reaction ⬆ ⬇ | ||
| VINC_HUMAN | | Vinculin | Cytoskeletal assembly associated protein | similar | Individual reaction ⬆ ⬇ | ||
| | | | not identified protein spots | | similar | Individual reaction ⬆ ⬇ | |
| ACTB_HUMAN | | Actin, cytoplasmic 1 (Beta-actin) | Microfilamental network protein | similar | Individual reaction ⬆ ⬇ | ||
| TBA1B_HUMAN | | Tubulin alpha- chain | Microtubule network protein | similar | Individual reaction ⬆ ⬇ | ||
| ATPB_HUMAN | | ATP synthase subunit beta, mitochondrial precursor | Mitochondrial energy metabolism related protein | similar | Individual reaction ⬆ ⬇ | ||
| TBB2_HUMAN | | Tubulin beta-2 chain | Microfilamental network protein | similar | Individual reaction ⬆ ➜ ⬇ | ||
| K1C10_HUMAN | | Keratin, type I cytoskeletal 10 | Microfilamental network protein | similar | Individual reaction ⬆ ⬇ | ||
| ACTG_HUMAN | | Actin, cytoplasmic 2 (Gamma-actin) | Microfilamental network protein | similar | Individual reaction ⬆ ⬇ | ||
| | Q6FHP5_HUMAN | | PHB protein | Prohibitin - negative regulator of cell proliferation and may be a tumor suppressor. Mutations in PHB have been linked to sporadic breast cancer. | similar | homogeneous suppression ⬇ | |
| TPM4_HUMAN | | Tropomyosin alpha-4 chain | Microfilamental network protein | similar | Individual reaction ⬆ ⬇ | ||
| ALBU_HUMAN | | Serum albumin | Extracellular transport/carrier protein | similar | Individual reaction ⬆ ⬇ | ||
| PGAM1_HUMAN | | Phosphoglycerate mutase 1 | Energy metabolism related protein | similar | |||
| PGK1_HUMAN | | Phosphoglycerate kinase 1 | Energy metabolism related protein | similar | Individual reaction ⬆ ➜ ⬇ | ||
| HBB_HUMAN | | Hemoglobin subunit beta | Oxygen carrier | similar | Individual reaction ⬆ ⬇ | ||
| ENOA_HUMAN | | Alpha-enolase | multifunctional glycolytic enzyme | similar | Individual reaction ⬆ ➜ ⬇ | ||
| KPYM_HUMAN | | Pyruvate kinase, isozymes M1/M2 | Energy metabolism related protein | similar | Individual reaction ⬆ ➜ ⬇ | ||
| ENPL_HUMAN | | Endoplasmin precursor (94-kDa glucose-regulated protein) | Signal transduction pathways associated with endoplasmic reticulum stress | similar | |||
| PLSL_HUMAN | | Plastin-2 | Microfilamental network protein | similar | |||
| Q53QM2_HUMAN | | Hypothetical protein ACTR3 | Currently uncharacterized protein | similar | |||
| Q6IAT1_HUMAN | | GDI2 protein (GDP dissociation inhibitor 2) | Regulatory protein in the functional cycle and recycling of Rab GTPases | similar | Individual suppression ⬇ | ||
| | UQCR1_HUMAN | | Reductase complex core protein I | Ubiquinol-cytochrome C- reductase, mitochondrial processing peptidase Beta-family | similar | Individual reaction ⬆ ⬇ | |
| GSTP1_HUMAN | | Glutathione S-transferase P (GST class-pi) | Stress response and anti-oxidant defence protein | similar | |||
| APT_HUMAN | | Adenine phosphoribosyl-transferase | Nucleotide metabolism | similar | Individual reaction ⬆ ➜ ⬇ | ||
| GRP78_HUMAN | | 78 kDa glucose-regulated protein precursor (GRP 78) | Energy metabolism related protein | similar | Individual reaction ⬆ ➜ ⬇ | ||
| HEM2_HUMAN | | Delta-aminolevulinic acid dehydratase | anti-oxidant defence and detoxification pathways | similar | |||
| HSP71_HUMAN | | Heat shock 70 kDa protein 1A | Stress response protein | similar | Individual reaction ⬆ ⬇ | ||
| PSME1_HUMAN | | Proteasome activator complex subunit 1 | The activator binds to proteasome 20S & enhances peptidase activity, e.g. under stress conditions | similar | Individual reaction ⬆ ⬇ | ||
| PNPH_HUMAN | | Purine nucleoside phosphorylase | Nucleotide- and nucleoside turnover, detoxification pathway | similar | Individual suppression ⬇ | ||
| ANXA3_HUMAN | | Annexin A3 | Membrane architecture and signalling protein | similar | Individual reaction ⬆ ➜ ⬇ | ||
| | VDAC1_HUMAN | | Voltage-dependent anion-selective channel protein 1 | Membrane protein, regulation of cell growth / death via redox-control | similar | Individual induction ⬆ | |
| Q9Y3F5_HUMAN | A6-related hypothetical protein | Twinfilin-2, Protein tyrosine kinase 9-like, actin-binding protein involved in motile and morphological processes | similar | ||||
Annotation to Table1: 158 spots have been distinguished by protein mapping as stably expressed (i.e. by all members of the group) in circulating leucocytes of the group with breast cancer patients. Altogether 74 proteins have been identified within 158 spots. The protein mapping image is demonstrated in Figure 5. The spot number in the map (Spot number) and corresponding accession number (Access number) and name (Accession name) received from the SwissProt database is provided in the table together with the name of the identified protein (Protein name) in accordance with the current protein nomenclature. The column “Classification” provides information about the function(s) currently known for each protein. The corresponding number of the functional group(s) is/are provided in the column “Functional group number”; the designation of the functional group with the corresponding number can be found in the separate Table 2. The regulation manner (up / down regulation) and the severity of the expression profile alterations under the cancer condition have been qualified and quantified versus the values in the control group; the resulting information is provided in the column “Profile alterations controls”. In accordance to the expression profile alterations, every mapped protein has been assigned to one of the altogether four CATEGORIES built-up as follows: A = 22 proteins with the statistically significant alterations in the expression profiles under the cancer condition compared to the control group (T≤0,1); B = 12 with the statistically non-significant alterations in the expression profiles under the cancer condition compared to the control group; C = 9 proteins with the expression profiles altered individually with highly heterogeneous expression profiles within the patient group versus stable expression levels within the control group; D = 31 proteins with similar expression-profiles within both patient and control groups of comparison. Further, under the cancer condition, the expression alterations as the reaction towards the applied radiotherapy has been qualified (up / down regulation) and quantified as it is summarised for each protein in the column “Alterations under radiotherapy”. The resulting statistics is provided here: 14 proteins homogeneously (group-significantly) suppressed (⬇ ), 4 proteins homogeneously (group-significantly) induced (⬆ ), 4 proteins individually (group-non-significantly) suppressed (⬇ ), 2 proteins individually (group-non-significantly) induced (⬆ ), 33 individually up- or down-regulated proteins (⬆ ⬇ ), and 17 proteins with individual up-/or down-/or unchanged regulation (⬆ ➜ ⬇ ) have been profiled under radiotherapy.
Systematic overview of the integrative panel of proteins/functional groups involved in the breast cancer specific molecular patterns in blood cells
| microfilamental network-associated and cytoskeletal-assembly proteins | [ | [ | |
| cell motility, migration & adhesion | [ | [ | |
| nucleoside / nucleotide turnover & metabolism | [ | | |
| protein metabolism (regulatory protein-synthesis & protein-modification enzymes, chaperons) | [ | [ | |
| energy metabolism | [ | [ | |
| vitamin metabolism | [ | | |
| mitochondrial proteins | [ | [ | |
| channels, membrane-architecture and intercellular-junction proteins | [ | | |
| anti-oxidant defence / red-ox control | [ | [ | |
| detoxification proteins | [ | | |
| stress-response / -protection related protein | [ | | |
| cell-cycle machinery proteins | [ | | |
| heat-shock proteins | [ | | |
| apoptosis-related proteins / protection against apoptosis | [ | [ | |
| tissue-remodelling enzymes | [ | | |
| extra-cellular transport & carrier-proteins | [ | | |
| signal-transduction proteins / signalling pathways | [ | | |
| longevity / ageing related proteins | [ | | |
| [ | | ||
| see references to individual proteins listed in the | | ||
| see references to individual proteins listed in |