Literature DB >> 23403562

Ground-state proton transfer in the photoswitching reactions of the fluorescent protein Dronpa.

Mark M Warren1, Marius Kaucikas, Ann Fitzpatrick, Paul Champion, J Timothy Sage, Jasper J van Thor.   

Abstract

The reversible photoswitching between the 'on' and 'off' states of the fluorescent protein Dronpa involves photoisomerization as well as protein side-chain rearrangements, but the process of interconversion remains poorly characterized. Here we use time-resolved infrared measurements to monitor the sequence of these structural changes, but also of proton transfer events, which are crucial to the development of spectroscopic contrast. Light-induced deprotonation of the chromophore phenolic oxygen in the off state is a thermal ground-state process, which follows ultrafast (9 ps) trans-cis photoisomerization, and so does not involve excited-state proton transfer. Steady-state infrared difference measurements exclude protonation of the imidazolinone nitrogen in both the on and off states. Pump-probe infrared measurements of the on state reveal a weakening of the hydrogen bonding between Arg66 and the chromophore C=O, which could be central to initiating structural rearrangement of Arg66 and His193 coinciding with the low quantum yield cis-trans photoisomerization.

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Year:  2013        PMID: 23403562     DOI: 10.1038/ncomms2460

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  24 in total

1.  1.8 A bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants.

Authors:  Andre C Stiel; Simon Trowitzsch; Gert Weber; Martin Andresen; Christian Eggeling; Stefan W Hell; Stefan Jakobs; Markus C Wahl
Journal:  Biochem J       Date:  2007-02-15       Impact factor: 3.857

2.  Solvent effects on the vibrational activity and photodynamics of the green fluorescent protein chromophore: a quantum-chemical study.

Authors:  Piero Altoe'; Fernando Bernardi; Marco Garavelli; Giorgio Orlandi; Fabrizia Negri
Journal:  J Am Chem Soc       Date:  2005-03-23       Impact factor: 15.419

3.  Ultrafast and low barrier motions in the photoreactions of the green fluorescent protein.

Authors:  Jasper J van Thor; Georgi Y Georgiev; Michael Towrie; J Timothy Sage
Journal:  J Biol Chem       Date:  2005-07-20       Impact factor: 5.157

4.  Ultrafast excited-state dynamics of the photoswitchable protein Dronpa.

Authors:  Eduard Fron; Cristina Flors; Gerd Schweitzer; Satoshi Habuchi; Hideaki Mizuno; Ryoko Ando; Frans C De Schryver; Atsushi Miyawaki; Johan Hofkens
Journal:  J Am Chem Soc       Date:  2007-03-27       Impact factor: 15.419

5.  Structural basis for reversible photoswitching in Dronpa.

Authors:  Martin Andresen; Andre C Stiel; Simon Trowitzsch; Gert Weber; Christian Eggeling; Markus C Wahl; Stefan W Hell; Stefan Jakobs
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-23       Impact factor: 11.205

6.  The molecular structure of green fluorescent protein.

Authors:  F Yang; L G Moss; G N Phillips
Journal:  Nat Biotechnol       Date:  1996-10       Impact factor: 54.908

7.  Structural basis for dual excitation and photoisomerization of the Aequorea victoria green fluorescent protein.

Authors:  K Brejc; T K Sixma; P A Kitts; S R Kain; R Y Tsien; M Ormö; S J Remington
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-18       Impact factor: 11.205

8.  The 1.7 A crystal structure of Dronpa: a photoswitchable green fluorescent protein.

Authors:  Pascal G Wilmann; Kristina Turcic; Jion M Battad; Matthew C J Wilce; Rodney J Devenish; Mark Prescott; Jamie Rossjohn
Journal:  J Mol Biol       Date:  2006-09-03       Impact factor: 5.469

Review 9.  What vibrations tell us about proteins.

Authors:  Andreas Barth; Christian Zscherp
Journal:  Q Rev Biophys       Date:  2002-11       Impact factor: 5.318

10.  Reversible single-molecule photoswitching in the GFP-like fluorescent protein Dronpa.

Authors:  Satoshi Habuchi; Ryoko Ando; Peter Dedecker; Wendy Verheijen; Hideaki Mizuno; Atsushi Miyawaki; Johan Hofkens
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-22       Impact factor: 11.205

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  8 in total

1.  Chromophore twisting in the excited state of a photoswitchable fluorescent protein captured by time-resolved serial femtosecond crystallography.

Authors:  Nicolas Coquelle; Michel Sliwa; Joyce Woodhouse; Giorgio Schirò; Virgile Adam; Andrew Aquila; Thomas R M Barends; Sébastien Boutet; Martin Byrdin; Sergio Carbajo; Eugenio De la Mora; R Bruce Doak; Mikolaj Feliks; Franck Fieschi; Lutz Foucar; Virginia Guillon; Mario Hilpert; Mark S Hunter; Stefan Jakobs; Jason E Koglin; Gabriela Kovacsova; Thomas J Lane; Bernard Lévy; Mengning Liang; Karol Nass; Jacqueline Ridard; Joseph S Robinson; Christopher M Roome; Cyril Ruckebusch; Matthew Seaberg; Michel Thepaut; Marco Cammarata; Isabelle Demachy; Martin Field; Robert L Shoeman; Dominique Bourgeois; Jacques-Philippe Colletier; Ilme Schlichting; Martin Weik
Journal:  Nat Chem       Date:  2017-09-11       Impact factor: 24.427

2.  Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa.

Authors:  Marius Kaucikas; Ann Fitzpatrick; Elana Bryan; Abelone Struve; Robert Henning; Irina Kosheleva; Vukica Srajer; Gerrit Groenhof; Jasper J Van Thor
Journal:  Proteins       Date:  2015-01-13

Review 3.  Photoswitchable Fluorescent Proteins: Mechanisms on Ultrafast Timescales.

Authors:  Longteng Tang; Chong Fang
Journal:  Int J Mol Sci       Date:  2022-06-09       Impact factor: 6.208

4.  Infrared spectroscopy reveals multi-step multi-timescale photoactivation in the photoconvertible protein archetype dronpa.

Authors:  Sergey P Laptenok; Agnieszka A Gil; Christopher R Hall; Andras Lukacs; James N Iuliano; Garth A Jones; Gregory M Greetham; Paul Donaldson; Atsushi Miyawaki; Peter J Tonge; Stephen R Meech
Journal:  Nat Chem       Date:  2018-06-11       Impact factor: 24.427

5.  X-Ray Crystal Structure and Properties of Phanta, a Weakly Fluorescent Photochromic GFP-Like Protein.

Authors:  Craig Don Paul; Daouda A K Traore; Seth Olsen; Rodney J Devenish; Devin W Close; Toby D M Bell; Andrew Bradbury; Matthew C J Wilce; Mark Prescott
Journal:  PLoS One       Date:  2015-04-29       Impact factor: 3.240

Review 6.  Deciphering Structural Photophysics of Fluorescent Proteins by Kinetic Crystallography.

Authors:  Dominique Bourgeois
Journal:  Int J Mol Sci       Date:  2017-06-02       Impact factor: 5.923

7.  Photoswitching mechanism of a fluorescent protein revealed by time-resolved crystallography and transient absorption spectroscopy.

Authors:  Joyce Woodhouse; Gabriela Nass Kovacs; Nicolas Coquelle; Lucas M Uriarte; Virgile Adam; Thomas R M Barends; Martin Byrdin; Eugenio de la Mora; R Bruce Doak; Mikolaj Feliks; Martin Field; Franck Fieschi; Virginia Guillon; Stefan Jakobs; Yasumasa Joti; Pauline Macheboeuf; Koji Motomura; Karol Nass; Shigeki Owada; Christopher M Roome; Cyril Ruckebusch; Giorgio Schirò; Robert L Shoeman; Michel Thepaut; Tadashi Togashi; Kensuke Tono; Makina Yabashi; Marco Cammarata; Lutz Foucar; Dominique Bourgeois; Michel Sliwa; Jacques-Philippe Colletier; Ilme Schlichting; Martin Weik
Journal:  Nat Commun       Date:  2020-02-06       Impact factor: 14.919

8.  X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature.

Authors:  Christopher D M Hutchison; Violeta Cordon-Preciado; Rhodri M L Morgan; Takanori Nakane; Josie Ferreira; Gabriel Dorlhiac; Alvaro Sanchez-Gonzalez; Allan S Johnson; Ann Fitzpatrick; Clyde Fare; Jon P Marangos; Chun Hong Yoon; Mark S Hunter; Daniel P DePonte; Sébastien Boutet; Shigeki Owada; Rie Tanaka; Kensuke Tono; So Iwata; Jasper J van Thor
Journal:  Int J Mol Sci       Date:  2017-09-07       Impact factor: 5.923

  8 in total

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