Literature DB >> 15771532

Solvent effects on the vibrational activity and photodynamics of the green fluorescent protein chromophore: a quantum-chemical study.

Piero Altoe'1, Fernando Bernardi, Marco Garavelli, Giorgio Orlandi, Fabrizia Negri.   

Abstract

Vibrational activities in the Raman and resonance Raman spectra of the cationic, neutral, and anionic forms of 4'-hydroxybenzylidene-2,3-dimethyl-imidazolinone, a model compound for the green fluorescent protein chromophore, have been obtained from quantum-chemical calculations in vacuo and with the inclusion of solvent effects through the polarizable continuum model. It is found that inclusion of solvent effects improves slightly the agreement with experimental data for the cationic and neutral forms, whose spectra are qualitatively well-described already by calculations in vacuo. In contrast, inclusion of solvent effects is crucial to reproduce correctly the activities of the anionic form. The structural effects of solvation are remarkable both in the ground and in the lowest excited state of the anionic chromophore and influence not only the vibrational activity but also the photodynamics of the lowest excited state. CASPT2//CASSCF photoreaction paths, computed by including solvent effects at the CASSCF level, indicate a facile torsional deformation around both exocyclic CC bonds. Rotation around the exocyclic CC double bond is shown to lead to a favored radiationless decay channel, more efficient than that in gas phase, and which explains the ultrafast fluorescence decay and ground-state recovery observed in solution. Conversely, rotation around the exocyclic CC single bond accounts for the bottleneck observed in the ground-state recovery cycle. It is also speculated that the ultrafast radiationless decay channel would be hampered in protein for unfavorable electrostatic interactions and steric reasons.

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Year:  2005        PMID: 15771532     DOI: 10.1021/ja0451517

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Vibrational analysis of a solvated green fluorescent protein chromophore.

Authors:  Tadeusz Andruniów
Journal:  J Mol Model       Date:  2007-03-23       Impact factor: 1.810

2.  Ground-state proton transfer in the photoswitching reactions of the fluorescent protein Dronpa.

Authors:  Mark M Warren; Marius Kaucikas; Ann Fitzpatrick; Paul Champion; J Timothy Sage; Jasper J van Thor
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

3.  Computer modeling of the structure and spectra of fluorescent proteins.

Authors:  A V Nemukhin; B L Grigorenko; A P Savitsky
Journal:  Acta Naturae       Date:  2009-07       Impact factor: 1.845

4.  Blue-Shifted Green Fluorescent Protein Homologues Are Brighter than Enhanced Green Fluorescent Protein under Two-Photon Excitation.

Authors:  Rosana S Molina; Tam M Tran; Robert E Campbell; Gerard G Lambert; Anya Salih; Nathan C Shaner; Thomas E Hughes; Mikhail Drobizhev
Journal:  J Phys Chem Lett       Date:  2017-05-25       Impact factor: 6.475

5.  Primary role of the chromophore bond length alternation in reversible photoconversion of red fluorescence proteins.

Authors:  Mikhail Drobizhev; Thomas E Hughes; Yuriy Stepanenko; Pawel Wnuk; Kieran O'Donnell; J Nathan Scott; Patrik R Callis; Alexander Mikhaylov; Leslie Dokken; Aleksander Rebane
Journal:  Sci Rep       Date:  2012-09-24       Impact factor: 4.379

6.  Photophysics and dihedral freedom of the chromophore in yellow, blue, and green fluorescent protein.

Authors:  Colleen M Megley; Luisa A Dickson; Scott L Maddalo; Gabriel J Chandler; Marc Zimmer
Journal:  J Phys Chem B       Date:  2009-01-08       Impact factor: 2.991

7.  Chromophore protonation state controls photoswitching of the fluoroprotein asFP595.

Authors:  Lars V Schäfer; Gerrit Groenhof; Martial Boggio-Pasqua; Michael A Robb; Helmut Grubmüller
Journal:  PLoS Comput Biol       Date:  2008-03-21       Impact factor: 4.475

8.  Long- and Short-Range Electrostatic Fields in GFP Mutants: Implications for Spectral Tuning.

Authors:  M Drobizhev; P R Callis; R Nifosì; G Wicks; C Stoltzfus; L Barnett; T E Hughes; P Sullivan; A Rebane
Journal:  Sci Rep       Date:  2015-08-19       Impact factor: 4.379

9.  Excited-State Proton-Transfer-Induced Trapping Enhances the Fluorescence Emission of a Locked GFP Chromophore.

Authors:  Xiang-Yang Liu; Xue-Ping Chang; Shu-Hua Xia; Ganglong Cui; Walter Thiel
Journal:  J Chem Theory Comput       Date:  2016-01-15       Impact factor: 6.006

10.  Influence of the First Chromophore-Forming Residue on Photobleaching and Oxidative Photoconversion of EGFP and EYFP.

Authors:  Tirthendu Sen; Anastasia V Mamontova; Anastasia V Titelmayer; Aleksander M Shakhov; Artyom A Astafiev; Atanu Acharya; Konstantin A Lukyanov; Anna I Krylov; Alexey M Bogdanov
Journal:  Int J Mol Sci       Date:  2019-10-22       Impact factor: 5.923

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